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Gasteromycetes) of Alberta and Northwest Montana
University of Montana ScholarWorks at University of Montana Graduate Student Theses, Dissertations, & Professional Papers Graduate School 1975 A preliminary study of the flora and taxonomy of the order Lycoperdales (Gasteromycetes) of Alberta and northwest Montana William Blain Askew The University of Montana Follow this and additional works at: https://scholarworks.umt.edu/etd Let us know how access to this document benefits ou.y Recommended Citation Askew, William Blain, "A preliminary study of the flora and taxonomy of the order Lycoperdales (Gasteromycetes) of Alberta and northwest Montana" (1975). Graduate Student Theses, Dissertations, & Professional Papers. 6854. https://scholarworks.umt.edu/etd/6854 This Thesis is brought to you for free and open access by the Graduate School at ScholarWorks at University of Montana. It has been accepted for inclusion in Graduate Student Theses, Dissertations, & Professional Papers by an authorized administrator of ScholarWorks at University of Montana. For more information, please contact [email protected]. A PRELIMINARY STUDY OF THE FLORA AND TAXONOMY OF THE ORDER LYCOPERDALES (GASTEROMYCETES) OF ALBERTA AND NORTHWEST MONTANA By W. Blain Askew B,Ed., B.Sc,, University of Calgary, 1967, 1969* Presented in partial fulfillment of the requirements for the degree of Master of Arts UNIVERSITY OF MONTANA 1975 Approved 'by: Chairman, Board of Examiners ■ /Y, / £ 2 £ Date / UMI Number: EP37655 All rights reserved INFORMATION TO ALL USERS The quality of this reproduction is dependent upon the quality of the copy submitted. In the unlikely event that the author did not send a complete manuscript and there are missing pages, these will be noted. Also, if material had to be removed, a note will indicate the deletion. -
Axpcoords & Parallel Axparafit: Statistical Co-Phylogenetic Analyses
BMC Bioinformatics BioMed Central Software Open Access AxPcoords & parallel AxParafit: statistical co-phylogenetic analyses on thousands of taxa Alexandros Stamatakis*1,2, Alexander F Auch3, Jan Meier-Kolthoff3 and Markus Göker4 Address: 1École Polytechnique Fédérale de Lausanne, School of Computer & Communication Sciences, Laboratory for Computational Biology and Bioinformatics STATION 14, CH-1015 Lausanne, Switzerland, 2Swiss Institute of Bioinformatics, 3Center for Bioinformatics (ZBIT), Sand 14, Tübingen, University of Tübingen, Germany and 4Organismic Botany/Mycology, Auf der Morgenstelle 1, Tübingen, University of Tübingen, Germany Email: Alexandros Stamatakis* - [email protected]; Alexander F Auch - [email protected]; Jan Meier- Kolthoff - [email protected]; Markus Göker - [email protected] * Corresponding author Published: 22 October 2007 Received: 26 June 2007 Accepted: 22 October 2007 BMC Bioinformatics 2007, 8:405 doi:10.1186/1471-2105-8-405 This article is available from: http://www.biomedcentral.com/1471-2105/8/405 © 2007 Stamatakis et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: Current tools for Co-phylogenetic analyses are not able to cope with the continuous accumulation of phylogenetic data. The sophisticated statistical test for host-parasite co-phylogenetic analyses implemented in Parafit does not allow it to handle large datasets in reasonable times. The Parafit and DistPCoA programs are the by far most compute-intensive components of the Parafit analysis pipeline. -
Phylogenetic Relationships of Rhizoctonia Fungi Within the Cantharellales
fungal biology 120 (2016) 603e619 journal homepage: www.elsevier.com/locate/funbio Phylogenetic relationships of Rhizoctonia fungi within the Cantharellales Dolores GONZALEZa,*, Marianela RODRIGUEZ-CARRESb, Teun BOEKHOUTc, Joost STALPERSc, Eiko E. KURAMAEd, Andreia K. NAKATANIe, Rytas VILGALYSf, Marc A. CUBETAb aInstituto de Ecologıa, A.C., Red de Biodiversidad y Sistematica, Carretera Antigua a Coatepec No. 351, El Haya, 91070 Xalapa, Veracruz, Mexico bDepartment of Plant Pathology, North Carolina State University, Center for Integrated Fungal Research, Campus Box 7251, Raleigh, NC 27695, USA cCBS Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands dDepartment of Microbial Ecology, Netherlands Institute of Ecology (NIOO/KNAW), Droevendaalsesteeg 10, 6708 PB Wageningen, The Netherlands eUNESP, Faculdade de Ci^encias Agronomicas,^ CP 237, 18603-970 Botucatu, SP, Brazil fDepartment of Biology, Duke University, Durham, NC 27708, USA article info abstract Article history: Phylogenetic relationships of Rhizoctonia fungi within the order Cantharellales were studied Received 2 January 2015 using sequence data from portions of the ribosomal DNA cluster regions ITS-LSU, rpb2, tef1, Received in revised form and atp6 for 50 taxa, and public sequence data from the rpb2 locus for 165 taxa. Data sets 1 January 2016 were analysed individually and combined using Maximum Parsimony, Maximum Likeli- Accepted 19 January 2016 hood, and Bayesian Phylogenetic Inference methods. All analyses supported the mono- Available online 29 January 2016 phyly of the family Ceratobasidiaceae, which comprises the genera Ceratobasidium and Corresponding Editor: Thanatephorus. Multi-locus analysis revealed 10 well-supported monophyletic groups that Joseph W. Spatafora were consistent with previous separation into anastomosis groups based on hyphal fusion criteria. -
Keratinases and Microbial Degradation of Keratin
Available online a t www.pelagiaresearchlibrary.com Pelagia Research Library Advances in Applied Science Research, 2015, 6(2):74-82 ISSN: 0976-8610 CODEN (USA): AASRFC Keratinases and microbial degradation of Keratin Itisha Singh 1 and R. K. S. Kushwaha 2 1Department of Microbiology, Saaii College of Medical Sciences and Technology, Chaubepur, Kanpur 2Shri Shakti College, Harbaspur, Ghatampur, Kanpur ______________________________________________________________________________________________ ABSTRACT The present review deals with fungal keratinases including that of dermatophytes. Bacterial keratinases were also included. Temperature and substrate relationship keratinase production has also been discussed. Keratin degradation and industrial involvement of keratinase producing fungi is also reviewed. Key words : Keratinase, keratin, degradation, fungi. ______________________________________________________________________________________________ INTRODUCTION Keratin is an insoluble macromolecule requiring the secretion of extra cellular enzymes for biodegradation to occur. Keratin comprises long polypeptide chains, which are resistant to the activity of non-substrate-specific proteases. Adjacent chains are linked by disulphide bonds thought responsible for the stability and resistance to degradation of keratin (Safranek and Goos, 1982). The degradation of keratinous material is important medically and agriculturally (Shih, 1993; Matsumoto, 1996). Secretion of keratinolytic enzymes is associated with dermatophytic fungi, for which keratin -
Plant Life MagillS Encyclopedia of Science
MAGILLS ENCYCLOPEDIA OF SCIENCE PLANT LIFE MAGILLS ENCYCLOPEDIA OF SCIENCE PLANT LIFE Volume 4 Sustainable Forestry–Zygomycetes Indexes Editor Bryan D. Ness, Ph.D. Pacific Union College, Department of Biology Project Editor Christina J. Moose Salem Press, Inc. Pasadena, California Hackensack, New Jersey Editor in Chief: Dawn P. Dawson Managing Editor: Christina J. Moose Photograph Editor: Philip Bader Manuscript Editor: Elizabeth Ferry Slocum Production Editor: Joyce I. Buchea Assistant Editor: Andrea E. Miller Page Design and Graphics: James Hutson Research Supervisor: Jeffry Jensen Layout: William Zimmerman Acquisitions Editor: Mark Rehn Illustrator: Kimberly L. Dawson Kurnizki Copyright © 2003, by Salem Press, Inc. All rights in this book are reserved. No part of this work may be used or reproduced in any manner what- soever or transmitted in any form or by any means, electronic or mechanical, including photocopy,recording, or any information storage and retrieval system, without written permission from the copyright owner except in the case of brief quotations embodied in critical articles and reviews. For information address the publisher, Salem Press, Inc., P.O. Box 50062, Pasadena, California 91115. Some of the updated and revised essays in this work originally appeared in Magill’s Survey of Science: Life Science (1991), Magill’s Survey of Science: Life Science, Supplement (1998), Natural Resources (1998), Encyclopedia of Genetics (1999), Encyclopedia of Environmental Issues (2000), World Geography (2001), and Earth Science (2001). ∞ The paper used in these volumes conforms to the American National Standard for Permanence of Paper for Printed Library Materials, Z39.48-1992 (R1997). Library of Congress Cataloging-in-Publication Data Magill’s encyclopedia of science : plant life / edited by Bryan D. -
Developments in Fungal Taxonomy
CLINICAL MICROBIOLOGY REVIEWS, July 1999, p. 454–500 Vol. 12, No. 3 0893-8512/99/$04.00ϩ0 Copyright © 1999, American Society for Microbiology. All Rights Reserved. Developments in Fungal Taxonomy JOSEP GUARRO,* JOSEPA GENE´, AND ALBERTO M. STCHIGEL Unitat de Microbiologia, Departament de Cie`ncies Me`diques Ba`siques, Facultat de Medicina i Cie`ncies de la Salut, Universitat Rovira i Virgili, 43201 Reus, Spain INTRODUCTION .......................................................................................................................................................454 THE CONCEPT OF SPECIES IN FUNGI .............................................................................................................455 PHYLOGENY AND EVOLUTION...........................................................................................................................455 NOMENCLATURE.....................................................................................................................................................456 CURRENT MYCOLOGICAL TYPING METHODS..............................................................................................457 Morphology..............................................................................................................................................................457 Downloaded from Molecular Techniques ............................................................................................................................................459 Other Techniques....................................................................................................................................................460 -
Crittendenia Gen. Nov., a New Lichenicolous Lineage in the Agaricostilbomycetes (Pucciniomycotina), and a Review of the Biology
The Lichenologist (2021), 53, 103–116 doi:10.1017/S002428292000033X Standard Paper Crittendenia gen. nov., a new lichenicolous lineage in the Agaricostilbomycetes (Pucciniomycotina), and a review of the biology, phylogeny and classification of lichenicolous heterobasidiomycetes Ana M. Millanes1, Paul Diederich2, Martin Westberg3 and Mats Wedin4 1Departamento de Biología y Geología, Física y Química Inorgánica, Universidad Rey Juan Carlos, E-28933 Móstoles, Spain; 2Musée national d’histoire naturelle, 25 rue Munster, L-2160 Luxembourg; 3Museum of Evolution, Norbyvägen 16, SE-75236 Uppsala, Sweden and 4Department of Botany, Swedish Museum of Natural History, P.O. Box 50007, SE-10405 Stockholm, Sweden Abstract The lichenicolous ‘heterobasidiomycetes’ belong in the Tremellomycetes (Agaricomycotina) and in the Pucciniomycotina. In this paper, we provide an introduction and review of these lichenicolous taxa, focusing on recent studies and novelties of their classification, phylogeny and evolution. Lichen-inhabiting fungi in the Pucciniomycotina are represented by only a small number of species included in the genera Chionosphaera, Cyphobasidium and Lichenozyma. The phylogenetic position of the lichenicolous representatives of Chionosphaera has, however, never been investigated by molecular methods. Phylogenetic analyses using the nuclear SSU, ITS, and LSU ribosomal DNA mar- kers reveal that the lichenicolous members of Chionosphaera form a monophyletic group in the Pucciniomycotina, distinct from Chionosphaera and outside the Chionosphaeraceae. The new genus Crittendenia is described to accommodate these lichen-inhabiting spe- cies. Crittendenia is characterized by minute synnemata-like basidiomata, the presence of clamp connections and aseptate tubular basidia from which 4–7 spores discharge passively, often in groups. Crittendenia, Cyphobasidium and Lichenozyma are the only lichenicolous lineages known so far in the Pucciniomycotina, whereas Chionosphaera does not include any lichenicolous taxa. -
<I>Thecaphora Capensis</I>
Persoonia 21, 2008: 147–152 www.persoonia.org RESEARCH ARTICLE doi:10.3767/003158508X387462 Thecaphora capensis sp. nov., an unusual new anther smut on Oxalis in South Africa F. Roets 1, L.L. Dreyer 2, M.J. Wingfield 3, D. Begerow 4 Key words Abstract The smut genus Thecaphora contains plant parasitic microfungi that typically infect very specific plant organs. In this study, we describe a new species of Thecaphora from Oxalis lanata var. rosea (Oxalidaceae) in the anther-smut Cape Floristic Region of South Africa. Molecular phylogenetic reconstructions based on large subunit ribosomal Cape Floristic Region DNA sequence data confirmed the generic placement of the fungus and confirmed that it represents an undescribed Oxalis species for which the name T. capensis sp. nov. is provided. The closest known sister species of the new taxon is phylogeny T. oxalidis that infects the fruits of Oxalis spp. in Europe, Asia and the Americas. In contrast, T. capensis produces Thecaphora teliospores within the anthers of its host. This is the first documented case of an anther-smut from an African spe- cies of Oxalis and the first Thecaphora species described from Africa. Article info Received: 24 August 2008; Accepted: 30 October 2008; Published: 10 November 2008. INTRODUCTION The smut genus Thecaphora resides in the Glomosporiaceae (Goldblatt & Manning 2000) and the largest bulbous genus in (Bauer et al. 2001, Vánky et al. 2008) and includes c. 60 de- the region. The CFR Oxalis spp. flower during the wet winter scribed species. Species of Thecaphora produce sori within months (April to August), and escape the drier summer months various plant organs including seeds, flowers, leaves, stems below ground, only to emerge again at the onset of the next and roots. -
Research Article Calvatia Nodulata, a New Gasteroid Fungus from Brazilian Semiarid Region
Hindawi Publishing Corporation Journal of Mycology Volume 2014, Article ID 697602, 7 pages http://dx.doi.org/10.1155/2014/697602 Research Article Calvatia nodulata, a New Gasteroid Fungus from Brazilian Semiarid Region Dônis da Silva Alfredo,1 Ana Clarissa Moura Rodrigues,1 and Iuri Goulart Baseia2 1 Programa de Pos-Graduac´ ¸ao˜ em Sistematica´ e Evoluc¸ao,˜ Centro de Biociencias,ˆ Universidade Federal do Rio Grande do Norte, Campus Universitario,´ 59072−970 Natal, RN, Brazil 2 Departamento Botanicaˆ e Zoologia, Centro de Biociencias,ˆ Universidade Federal do Rio Grande do Norte, Campus Universitario,´ CEP 59072–970 Natal, RN, Brazil Correspondence should be addressed to Donisˆ da Silva Alfredo; [email protected] Received 6 May 2014; Accepted 30 June 2014; Published 21 July 2014 Academic Editor: Terezinha Inez Estivalet Svidzinski Copyright © 2014 Donisˆ da Silva Alfredo et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Studies carried out in tropical rain forest enclaves in semiarid region of Brazil revealed a new species of Calvatia. The basidiomata were collected during the rainy season of 2009 and 2012 in two states of Northeast Brazil. Macroscopic and microscopic analyses were based on dried basidiomata with the aid of light microscope and scanning electron microscope. Calvatia nodulata is recognized by its pyriform to turbinate basidiomata, exoperidium granulose to pilose and not persistent, subgleba becoming hollow at maturity, nodulose capillitium, and punctate basidiospores (3–5 m). Detailed description, taxonomic comments, and illustrations with photographs and drawings are provided. -
<I>Ustilago-Sporisorium-Macalpinomyces</I>
Persoonia 29, 2012: 55–62 www.ingentaconnect.com/content/nhn/pimj REVIEW ARTICLE http://dx.doi.org/10.3767/003158512X660283 A review of the Ustilago-Sporisorium-Macalpinomyces complex A.R. McTaggart1,2,3,5, R.G. Shivas1,2, A.D.W. Geering1,2,5, K. Vánky4, T. Scharaschkin1,3 Key words Abstract The fungal genera Ustilago, Sporisorium and Macalpinomyces represent an unresolved complex. Taxa within the complex often possess characters that occur in more than one genus, creating uncertainty for species smut fungi placement. Previous studies have indicated that the genera cannot be separated based on morphology alone. systematics Here we chronologically review the history of the Ustilago-Sporisorium-Macalpinomyces complex, argue for its Ustilaginaceae resolution and suggest methods to accomplish a stable taxonomy. A combined molecular and morphological ap- proach is required to identify synapomorphic characters that underpin a new classification. Ustilago, Sporisorium and Macalpinomyces require explicit re-description and new genera, based on monophyletic groups, are needed to accommodate taxa that no longer fit the emended descriptions. A resolved classification will end the taxonomic confusion that surrounds generic placement of these smut fungi. Article info Received: 18 May 2012; Accepted: 3 October 2012; Published: 27 November 2012. INTRODUCTION TAXONOMIC HISTORY Three genera of smut fungi (Ustilaginomycotina), Ustilago, Ustilago Spo ri sorium and Macalpinomyces, contain about 540 described Ustilago, derived from the Latin ustilare (to burn), was named species (Vánky 2011b). These three genera belong to the by Persoon (1801) for the blackened appearance of the inflores- family Ustilaginaceae, which mostly infect grasses (Begerow cence in infected plants, as seen in the type species U. -
Crittendenia Gen. Nov., a New Lichenicolous Lineage in the Agaricostilbomycetes (Pucciniomycotina), and a Review of the Biology
The Lichenologist (2021), 53, 103–116 doi:10.1017/S002428292000033X Standard Paper Crittendenia gen. nov., a new lichenicolous lineage in the Agaricostilbomycetes (Pucciniomycotina), and a review of the biology, phylogeny and classification of lichenicolous heterobasidiomycetes Ana M. Millanes1, Paul Diederich2, Martin Westberg3 and Mats Wedin4 1Departamento de Biología y Geología, Física y Química Inorgánica, Universidad Rey Juan Carlos, E-28933 Móstoles, Spain; 2Musée national d’histoire naturelle, 25 rue Munster, L-2160 Luxembourg; 3Museum of Evolution, Norbyvägen 16, SE-75236 Uppsala, Sweden and 4Department of Botany, Swedish Museum of Natural History, P.O. Box 50007, SE-10405 Stockholm, Sweden Abstract The lichenicolous ‘heterobasidiomycetes’ belong in the Tremellomycetes (Agaricomycotina) and in the Pucciniomycotina. In this paper, we provide an introduction and review of these lichenicolous taxa, focusing on recent studies and novelties of their classification, phylogeny and evolution. Lichen-inhabiting fungi in the Pucciniomycotina are represented by only a small number of species included in the genera Chionosphaera, Cyphobasidium and Lichenozyma. The phylogenetic position of the lichenicolous representatives of Chionosphaera has, however, never been investigated by molecular methods. Phylogenetic analyses using the nuclear SSU, ITS, and LSU ribosomal DNA mar- kers reveal that the lichenicolous members of Chionosphaera form a monophyletic group in the Pucciniomycotina, distinct from Chionosphaera and outside the Chionosphaeraceae. The new genus Crittendenia is described to accommodate these lichen-inhabiting spe- cies. Crittendenia is characterized by minute synnemata-like basidiomata, the presence of clamp connections and aseptate tubular basidia from which 4–7 spores discharge passively, often in groups. Crittendenia, Cyphobasidium and Lichenozyma are the only lichenicolous lineages known so far in the Pucciniomycotina, whereas Chionosphaera does not include any lichenicolous taxa. -
Monograph on Dematiaceous Fungi
Monograph On Dematiaceous fungi A guide for description of dematiaceous fungi fungi of medical importance, diseases caused by them, diagnosis and treatment By Mohamed Refai and Heidy Abo El-Yazid Department of Microbiology, Faculty of Veterinary Medicine, Cairo University 2014 1 Preface The first time I saw cultures of dematiaceous fungi was in the laboratory of Prof. Seeliger in Bonn, 1962, when I attended a practical course on moulds for one week. Then I handled myself several cultures of black fungi, as contaminants in Mycology Laboratory of Prof. Rieth, 1963-1964, in Hamburg. When I visited Prof. DE Varies in Baarn, 1963. I was fascinated by the tremendous number of moulds in the Centraalbureau voor Schimmelcultures, Baarn, Netherlands. On the other hand, I was proud, that El-Sheikh Mahgoub, a Colleague from Sundan, wrote an internationally well-known book on mycetoma. I have never seen cases of dematiaceous fungal infections in Egypt, therefore, I was very happy, when I saw the collection of mycetoma cases reported in Egypt by the eminent Egyptian Mycologist, Prof. Dr Mohamed Taha, Zagazig University. To all these prominent mycologists I dedicate this monograph. Prof. Dr. Mohamed Refai, 1.5.2014 Heinz Seeliger Heinz Rieth Gerard de Vries, El-Sheikh Mahgoub Mohamed Taha 2 Contents 1. Introduction 4 2. 30. The genus Rhinocladiella 83 2. Description of dematiaceous 6 2. 31. The genus Scedosporium 86 fungi 2. 1. The genus Alternaria 6 2. 32. The genus Scytalidium 89 2.2. The genus Aurobasidium 11 2.33. The genus Stachybotrys 91 2.3. The genus Bipolaris 16 2.