<I>Craterellus Excelsus</I>
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Phylogenetic Relationships of Rhizoctonia Fungi Within the Cantharellales
fungal biology 120 (2016) 603e619 journal homepage: www.elsevier.com/locate/funbio Phylogenetic relationships of Rhizoctonia fungi within the Cantharellales Dolores GONZALEZa,*, Marianela RODRIGUEZ-CARRESb, Teun BOEKHOUTc, Joost STALPERSc, Eiko E. KURAMAEd, Andreia K. NAKATANIe, Rytas VILGALYSf, Marc A. CUBETAb aInstituto de Ecologıa, A.C., Red de Biodiversidad y Sistematica, Carretera Antigua a Coatepec No. 351, El Haya, 91070 Xalapa, Veracruz, Mexico bDepartment of Plant Pathology, North Carolina State University, Center for Integrated Fungal Research, Campus Box 7251, Raleigh, NC 27695, USA cCBS Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands dDepartment of Microbial Ecology, Netherlands Institute of Ecology (NIOO/KNAW), Droevendaalsesteeg 10, 6708 PB Wageningen, The Netherlands eUNESP, Faculdade de Ci^encias Agronomicas,^ CP 237, 18603-970 Botucatu, SP, Brazil fDepartment of Biology, Duke University, Durham, NC 27708, USA article info abstract Article history: Phylogenetic relationships of Rhizoctonia fungi within the order Cantharellales were studied Received 2 January 2015 using sequence data from portions of the ribosomal DNA cluster regions ITS-LSU, rpb2, tef1, Received in revised form and atp6 for 50 taxa, and public sequence data from the rpb2 locus for 165 taxa. Data sets 1 January 2016 were analysed individually and combined using Maximum Parsimony, Maximum Likeli- Accepted 19 January 2016 hood, and Bayesian Phylogenetic Inference methods. All analyses supported the mono- Available online 29 January 2016 phyly of the family Ceratobasidiaceae, which comprises the genera Ceratobasidium and Corresponding Editor: Thanatephorus. Multi-locus analysis revealed 10 well-supported monophyletic groups that Joseph W. Spatafora were consistent with previous separation into anastomosis groups based on hyphal fusion criteria. -
Plant Life MagillS Encyclopedia of Science
MAGILLS ENCYCLOPEDIA OF SCIENCE PLANT LIFE MAGILLS ENCYCLOPEDIA OF SCIENCE PLANT LIFE Volume 4 Sustainable Forestry–Zygomycetes Indexes Editor Bryan D. Ness, Ph.D. Pacific Union College, Department of Biology Project Editor Christina J. Moose Salem Press, Inc. Pasadena, California Hackensack, New Jersey Editor in Chief: Dawn P. Dawson Managing Editor: Christina J. Moose Photograph Editor: Philip Bader Manuscript Editor: Elizabeth Ferry Slocum Production Editor: Joyce I. Buchea Assistant Editor: Andrea E. Miller Page Design and Graphics: James Hutson Research Supervisor: Jeffry Jensen Layout: William Zimmerman Acquisitions Editor: Mark Rehn Illustrator: Kimberly L. Dawson Kurnizki Copyright © 2003, by Salem Press, Inc. All rights in this book are reserved. No part of this work may be used or reproduced in any manner what- soever or transmitted in any form or by any means, electronic or mechanical, including photocopy,recording, or any information storage and retrieval system, without written permission from the copyright owner except in the case of brief quotations embodied in critical articles and reviews. For information address the publisher, Salem Press, Inc., P.O. Box 50062, Pasadena, California 91115. Some of the updated and revised essays in this work originally appeared in Magill’s Survey of Science: Life Science (1991), Magill’s Survey of Science: Life Science, Supplement (1998), Natural Resources (1998), Encyclopedia of Genetics (1999), Encyclopedia of Environmental Issues (2000), World Geography (2001), and Earth Science (2001). ∞ The paper used in these volumes conforms to the American National Standard for Permanence of Paper for Printed Library Materials, Z39.48-1992 (R1997). Library of Congress Cataloging-in-Publication Data Magill’s encyclopedia of science : plant life / edited by Bryan D. -
New Species and Distribution Records for Clavulina (Cantharellales, Basidiomycota) from the Guiana Shield, with a Key to the Lowland Neotropical Taxa
fungal biology 116 (2012) 1263e1274 journal homepage: www.elsevier.com/locate/funbio New species and distribution records for Clavulina (Cantharellales, Basidiomycota) from the Guiana Shield, with a key to the lowland neotropical taxa Jessie K. UEHLINGa,*,1, Terry W. HENKELa, M. Catherine AIMEb, Rytas VILGALYSc, Matthew E. SMITHd aDepartment of Biological Sciences, Humboldt State University, Arcata, CA 95521, USA bDepartment of Botany and Plant Pathology, Purdue University, West Lafayette, IN 47907, USA cDepartment of Biology, Duke University, Durham, NC 27708, USA dDepartment of Plant Pathology, University of Florida, Gainesville, FL 32611, USA article info abstract Article history: Three new and one previously described species of Clavulina (Clavulinaceae, Cantharel- Received 4 April 2012 lales, Basidiomycota) are reported from the central Guiana Shield region from tropical rain- Received in revised form forests dominated by ectomycorrhizal trees of the leguminous genus Dicymbe (Fabaceae 19 September 2012 subfam. Caesalpinioideae). We provide morphological, DNA sequence, habitat, and fruiting Accepted 21 September 2012 occurrence data for each species. The new species conform to a generic concept of Clavu- Available online 7 November 2012 lina that includes coralloid, branched basidiomata with amphigenous hymenia, basidia Corresponding Editor: with two or 2À4 incurved sterigmata and postpartal septa present or absent, and smooth, H. Thorsten Lumbsch hyaline, guttulate basidiospores. Placements of the new species in Clavulina were corrobo- rated with DNA sequence data from the internal transcribed spacer and large subunit of Keywords: the nuclear ribosomal repeat, and their infrageneric relationships were examined with Cantharelloid clade phylogenetic analyses based on DNA from the region coding for the second largest subunit Coral fungi of DNA-dependent RNA polymerase II (rpb2). -
Systematics of Division Basidiomycota 2
References: Kirk PM, Cannon PF, Minter DW, Stalpers JA. 2008. Dictionary of the Fungi (10th ed.).Wallingford, UK: CABI. Webster, J., & Weber, R. (2007). Introduction to fungi. Cambridge, UK: Cambridge University Press. SYSTEMATICS OF DIVISION BASIDIOMYCOTA 2 THELEPHOROID CLADE This includes the order Thelephorales, a small group of predominantly ectomycorrhizal fungi with variable basidiocarps. The most important genus is Thelephora. T. terrestris produces clusters of fanshaped basidiocarps which are chocolate-brown in colour with a paler margin. They are often formed around the stem of young trees, seemingly ‘choking’ them. Basidiocarps of T. terrestris superficially resemble those of Stereum but are monomitic, composed of clamped generative hyphae only. The basidiospores are brown and warty. Thelephora terrestris fruits in association with coniferous trees growing on light sandy soils and heaths. It isone of a group of early-stage ectomycorrhizal associates of a variety of trees and also forms mycorrhiza with Arbutus menziesii, a member of the Ericaceae (Webster& Weber, 2007). HYMENOCHAETOID CLADE One feature that distinguishes the five Homobasidiomycete clades considered in the previous sections from the remaining three clades is the structure of the parenthesome, i.e. the membranous structure overarching the septal pore. In the five clades already described, the typical homobasidiomycete dolipore with a perforated parenthesome is found, whereas in the hymenochaetoid, cantharelloid and gomphoid_phalloid clades shown in, the parenthesome is generally imperforate. Imperforate parenthesomes are also found in certain Heterobasidiomycetes, namely Dacrymycetales and Auriculariales. The hymenochaetoid clade comprises about 630 species recruited from three families, namely the entire Hymenochaetaceae and parts of Corticiaceae and Polyporaceae (Webster& Weber, 2007). -
9B Taxonomy to Genus
Fungus and Lichen Genera in the NEMF Database Taxonomic hierarchy: phyllum > class (-etes) > order (-ales) > family (-ceae) > genus. Total number of genera in the database: 526 Anamorphic fungi (see p. 4), which are disseminated by propagules not formed from cells where meiosis has occurred, are presently not grouped by class, order, etc. Most propagules can be referred to as "conidia," but some are derived from unspecialized vegetative mycelium. A significant number are correlated with fungal states that produce spores derived from cells where meiosis has, or is assumed to have, occurred. These are, where known, members of the ascomycetes or basidiomycetes. However, in many cases, they are still undescribed, unrecognized or poorly known. (Explanation paraphrased from "Dictionary of the Fungi, 9th Edition.") Principal authority for this taxonomy is the Dictionary of the Fungi and its online database, www.indexfungorum.org. For lichens, see Lecanoromycetes on p. 3. Basidiomycota Aegerita Poria Macrolepiota Grandinia Poronidulus Melanophyllum Agaricomycetes Hyphoderma Postia Amanitaceae Cantharellales Meripilaceae Pycnoporellus Amanita Cantharellaceae Abortiporus Skeletocutis Bolbitiaceae Cantharellus Antrodia Trichaptum Agrocybe Craterellus Grifola Tyromyces Bolbitius Clavulinaceae Meripilus Sistotremataceae Conocybe Clavulina Physisporinus Trechispora Hebeloma Hydnaceae Meruliaceae Sparassidaceae Panaeolina Hydnum Climacodon Sparassis Clavariaceae Polyporales Gloeoporus Steccherinaceae Clavaria Albatrellaceae Hyphodermopsis Antrodiella -
Septal Pore Caps in Basidiomycetes Composition and Ultrastructure
Septal Pore Caps in Basidiomycetes Composition and Ultrastructure Septal Pore Caps in Basidiomycetes Composition and Ultrastructure Septumporie-kappen in Basidiomyceten Samenstelling en Ultrastructuur (met een samenvatting in het Nederlands) Proefschrift ter verkrijging van de graad van doctor aan de Universiteit Utrecht op gezag van de rector magnificus, prof.dr. J.C. Stoof, ingevolge het besluit van het college voor promoties in het openbaar te verdedigen op maandag 17 december 2007 des middags te 16.15 uur door Kenneth Gregory Anthony van Driel geboren op 31 oktober 1975 te Terneuzen Promotoren: Prof. dr. A.J. Verkleij Prof. dr. H.A.B. Wösten Co-promotoren: Dr. T. Boekhout Dr. W.H. Müller voor mijn ouders Cover design by Danny Nooren. Scanning electron micrographs of septal pore caps of Rhizoctonia solani made by Wally Müller. Printed at Ponsen & Looijen b.v., Wageningen, The Netherlands. ISBN 978-90-6464-191-6 CONTENTS Chapter 1 General Introduction 9 Chapter 2 Septal Pore Complex Morphology in the Agaricomycotina 27 (Basidiomycota) with Emphasis on the Cantharellales and Hymenochaetales Chapter 3 Laser Microdissection of Fungal Septa as Visualized by 63 Scanning Electron Microscopy Chapter 4 Enrichment of Perforate Septal Pore Caps from the 79 Basidiomycetous Fungus Rhizoctonia solani by Combined Use of French Press, Isopycnic Centrifugation, and Triton X-100 Chapter 5 SPC18, a Novel Septal Pore Cap Protein of Rhizoctonia 95 solani Residing in Septal Pore Caps and Pore-plugs Chapter 6 Summary and General Discussion 113 Samenvatting 123 Nawoord 129 List of Publications 131 Curriculum vitae 133 Chapter 1 General Introduction Kenneth G.A. van Driel*, Arend F. -
A Checklist of Clavarioid Fungi (Agaricomycetes) Recorded in Brazil
A checklist of clavarioid fungi (Agaricomycetes) recorded in Brazil ANGELINA DE MEIRAS-OTTONI*, LIDIA SILVA ARAUJO-NETA & TATIANA BAPTISTA GIBERTONI Departamento de Micologia, Universidade Federal de Pernambuco, Av. Nelson Chaves s/n, Recife 50670-420 Brazil *CORRESPONDENCE TO: [email protected] ABSTRACT — Based on an intensive search of literature about clavarioid fungi (Agaricomycetes: Basidiomycota) in Brazil and revision of material deposited in Herbaria PACA and URM, a list of 195 taxa was compiled. These are distributed into six orders (Agaricales, Cantharellales, Gomphales, Hymenochaetales, Polyporales and Russulales) and 12 families (Aphelariaceae, Auriscalpiaceae, Clavariaceae, Clavulinaceae, Gomphaceae, Hymenochaetaceae, Lachnocladiaceae, Lentariaceae, Lepidostromataceae, Physalacriaceae, Pterulaceae, and Typhulaceae). Among the 22 Brazilian states with occurrence of clavarioid fungi, Rio Grande do Sul, Paraná and Amazonas have the higher number of species, but most of them are represented by a single record, which reinforces the need of more inventories and taxonomic studies about the group. KEY WORDS — diversity, taxonomy, tropical forest Introduction The clavarioid fungi are a polyphyletic group, characterized by coralloid, simple or branched basidiomata, with variable color and consistency. They include 30 genera with about 800 species, distributed in Agaricales, Cantharellales, Gomphales, Hymenochaetales, Polyporales and Russulales (Corner 1970; Petersen 1988; Kirk et al. 2008). These fungi are usually humicolous or lignicolous, but some can be symbionts – ectomycorrhizal, lichens or pathogens, being found in temperate, subtropical and tropical forests (Corner 1950, 1970; Petersen 1988; Nelsen et al. 2007; Henkel et al. 2012). Some species are edible, while some are poisonous (Toledo & Petersen 1989; Henkel et al. 2005, 2011). Studies about clavarioid fungi in Brazil are still scarce (Fidalgo & Fidalgo 1970; Rick 1959; De Lamônica-Freire 1979; Sulzbacher et al. -
A New Species of Cantharellus (Cantharellales, Basidiomycota, Fungi) from Subalpine Forest in Yunnan, China
Phytotaxa 252 (4): 273–279 ISSN 1179-3155 (print edition) http://www.mapress.com/j/pt/ PHYTOTAXA Copyright © 2016 Magnolia Press Article ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.252.4.3 A new species of Cantharellus (Cantharellales, Basidiomycota, Fungi) from subalpine forest in Yunnan, China SHI-CHENG SHAO1,2, PEI-GUI LIU2*, XIAO-FEI TIAN2, BART BUYCK3 & YAN-HONG GENG4 1Key Laboratory of Tropical Plant Resources and Sustainable Use, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sci- ences, Mengla County, Menglun 666303, Yunnan, China. 2Key Laboratory for Plant Biodiversity and Biogeography for East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 3Muséum National d’Histoire Naturelle, Département Systématique et Evolution, CP 39, ISYEB, UMR 7205 CNRS MNHN UPMC EPHE, 12 Rue Buffon, F-75005 Paris, France 4 Environmental Education Department, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla County, Menglun 666303, Yunnan, China *Author for correspondence. E-mail:[email protected] Abstract Cantharellus versicolor is described and illustrated as a new species based on morphological and molecular characters. The most significant features to distinguish the new species from other known Cantharellus are its extremely fleshy, turning gray after injury and with black floccose-fibrillose scales composed of thick-walled and irregular, erect hyphae on the pileus. It is described from the subalpine belt of Shangri-La, northwestern Yunnan, China. Phylogenetic analysis of the transcription elongation factor 1-alpha sequence data further support its systematic position in the subgenus Cantharellus and its descrip- tion as a new species. -
Fungal Allergy and Pathogenicity 20130415 112934.Pdf
Fungal Allergy and Pathogenicity Chemical Immunology Vol. 81 Series Editors Luciano Adorini, Milan Ken-ichi Arai, Tokyo Claudia Berek, Berlin Anne-Marie Schmitt-Verhulst, Marseille Basel · Freiburg · Paris · London · New York · New Delhi · Bangkok · Singapore · Tokyo · Sydney Fungal Allergy and Pathogenicity Volume Editors Michael Breitenbach, Salzburg Reto Crameri, Davos Samuel B. Lehrer, New Orleans, La. 48 figures, 11 in color and 22 tables, 2002 Basel · Freiburg · Paris · London · New York · New Delhi · Bangkok · Singapore · Tokyo · Sydney Chemical Immunology Formerly published as ‘Progress in Allergy’ (Founded 1939) Edited by Paul Kallos 1939–1988, Byron H. Waksman 1962–2002 Michael Breitenbach Professor, Department of Genetics and General Biology, University of Salzburg, Salzburg Reto Crameri Professor, Swiss Institute of Allergy and Asthma Research (SIAF), Davos Samuel B. Lehrer Professor, Clinical Immunology and Allergy, Tulane University School of Medicine, New Orleans, LA Bibliographic Indices. This publication is listed in bibliographic services, including Current Contents® and Index Medicus. Drug Dosage. The authors and the publisher have exerted every effort to ensure that drug selection and dosage set forth in this text are in accord with current recommendations and practice at the time of publication. However, in view of ongoing research, changes in government regulations, and the constant flow of information relating to drug therapy and drug reactions, the reader is urged to check the package insert for each drug for any change in indications and dosage and for added warnings and precautions. This is particularly important when the recommended agent is a new and/or infrequently employed drug. All rights reserved. No part of this publication may be translated into other languages, reproduced or utilized in any form or by any means electronic or mechanical, including photocopying, recording, microcopy- ing, or by any information storage and retrieval system, without permission in writing from the publisher. -
Polypore Diversity in North America with an Annotated Checklist
Mycol Progress (2016) 15:771–790 DOI 10.1007/s11557-016-1207-7 ORIGINAL ARTICLE Polypore diversity in North America with an annotated checklist Li-Wei Zhou1 & Karen K. Nakasone2 & Harold H. Burdsall Jr.2 & James Ginns3 & Josef Vlasák4 & Otto Miettinen5 & Viacheslav Spirin5 & Tuomo Niemelä 5 & Hai-Sheng Yuan1 & Shuang-Hui He6 & Bao-Kai Cui6 & Jia-Hui Xing6 & Yu-Cheng Dai6 Received: 20 May 2016 /Accepted: 9 June 2016 /Published online: 30 June 2016 # German Mycological Society and Springer-Verlag Berlin Heidelberg 2016 Abstract Profound changes to the taxonomy and classifica- 11 orders, while six other species from three genera have tion of polypores have occurred since the advent of molecular uncertain taxonomic position at the order level. Three orders, phylogenetics in the 1990s. The last major monograph of viz. Polyporales, Hymenochaetales and Russulales, accom- North American polypores was published by Gilbertson and modate most of polypore species (93.7 %) and genera Ryvarden in 1986–1987. In the intervening 30 years, new (88.8 %). We hope that this updated checklist will inspire species, new combinations, and new records of polypores future studies in the polypore mycota of North America and were reported from North America. As a result, an updated contribute to the diversity and systematics of polypores checklist of North American polypores is needed to reflect the worldwide. polypore diversity in there. We recognize 492 species of polypores from 146 genera in North America. Of these, 232 Keywords Basidiomycota . Phylogeny . Taxonomy . species are unchanged from Gilbertson and Ryvarden’smono- Wood-decaying fungus graph, and 175 species required name or authority changes. -
Craterellus Tubaeformis (Fries) Quélet ROD Name Cantharellus Tubaeformis Family Cantharellaceae Morphological Habit Chanterelle
S3 - 58 Craterellus tubaeformis (Fries) Quélet ROD name Cantharellus tubaeformis Family Cantharellaceae Morphological Habit chanterelle Description: CAP 1-3 (5) cm broad, convex to plane or broadly depressed, with an arched incurved margin at first, margin finally spreading or uplifted and becoming crenate to variously lobed, occasionally somewhat funnel shaped in age, usually not perforated in the disc at first but frequently becoming so in age, surface moist and more or less uneven, dark sordid yellow-brown. CONTEXT membranous, fragile, yellow-brown to gray-brown. ODOR AND TASTE not distinctive. GILLS decurrent, narrow and foldlike, dichotomously forked, yellow-gray to gray-brown. STEM 30-60 mm long, 3-7 mm thick, stuffed but becoming hollow and flabby, subequal, often compressed or furrowed, glabrous, dark to pale gray-brown above, usually off-white at base. PILEIPELLIS of hyaline, interwoven hyphae 6-12 µm in diam., the hyphae on the surface yellow-brown but otherwise not differentiated from the context. BASIDIA 64-82 x 9-11 µm, clavate, hyaline, flexuous toward the base, 2-4 spored. CYSTIDIA absent. CLAMP CONNECTIONS abundant. SPORES ellipsoid to ovoid, (8) 9-11 x 5.5-7 µm, smooth, hyaline, inamyloid, spore print white to creamy white. Distinguishing Features: The chanterellelike sporocarp with hollow stipe separates Craterellus tubaeformis from all other mushrooms. Distribution: Common and widely distributed in northwestern North America including northern Idaho; also eastern North America, including Appalachian Mountains and Canadian maritime provinces; also across northern Europe. Known from many dozens of locations throughout the range of the Northwest Forest Plan. Substrate and Habitat: On wet soil, often along streams or near springs or in bogs under conifers; also juxtaposed to rotten logs. -
Il/Ill Signature Redactsignature Redacted for Privacy
AN ABSTRACT OF THE THESIS OF Matthew James Trappe for the degree of Master of Science in Forest Science presented on September 13, 2001. Title: Ecology of Craterellus tubaeformj',AI in Westerrj..Qron.il/Ill Signature redactSignature redacted for privacy. Abstract approved: A. Castellano Robert P. Griffith Craterellus tuba eformis is a small to medium-sized forest mushroom that is fairly common in the Douglas-fir/western hemlock forests of the Pacific Northwestern United States and is most often associated with decayed coarse woody debris. In this study, the mycorrhizae of Craterellus tubaeformis in western Oregon is identified by DNA analysis using polymerase chain reaction (PCR) amplification and restriction fragment length polymorphism (RFLP) typing, and the mantle morphology isdescribed. Host associations with western hemlock, Douglas-fir5 and Sitka spruce are identified using the same molecular techniques, with Craterellus tubaeformis most commonly associated with western hemlock. Differences in genetic sequences and host associations between western North America, eastern North America, and. Europe are presented, and the possibility that variants of Craterellus. tubaeformis from the different geographies might deserve their own species epithets is discussed. The dependency of Craterellus tubaeformis on late seral stands and abundance of coarse woody debris was quantified by surveying 64 plots in the Coast and Cascade ranges of western Oregon.Logistic regression showed that the odds of Craterellus tubaeformis occurrence increased with stand age and coarse woody debris (CWD) volumes, however it is often found in younger stands. The likelihood of Craterellus tubaeformis occurrence in a stand was highly correlated to the presence of western hemlock. Linear regression analysis showed no significant relationships between stand age, CWD volume, slope, elevation, or aspect on Craterellus tuba eformis biomass productivity, though well- decayed CWD was the substrate for 88% of the collected biomass.