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Diverse Deep-Sea Anglerfishes Share a Genetically Reduced Luminous
RESEARCH ARTICLE Diverse deep-sea anglerfishes share a genetically reduced luminous symbiont that is acquired from the environment Lydia J Baker1*, Lindsay L Freed2, Cole G Easson2,3, Jose V Lopez2, Dante´ Fenolio4, Tracey T Sutton2, Spencer V Nyholm5, Tory A Hendry1* 1Department of Microbiology, Cornell University, New York, United States; 2Halmos College of Natural Sciences and Oceanography, Nova Southeastern University, Fort Lauderdale, United States; 3Department of Biology, Middle Tennessee State University, Murfreesboro, United States; 4Center for Conservation and Research, San Antonio Zoo, San Antonio, United States; 5Department of Molecular and Cell Biology, University of Connecticut, Storrs, United States Abstract Deep-sea anglerfishes are relatively abundant and diverse, but their luminescent bacterial symbionts remain enigmatic. The genomes of two symbiont species have qualities common to vertically transmitted, host-dependent bacteria. However, a number of traits suggest that these symbionts may be environmentally acquired. To determine how anglerfish symbionts are transmitted, we analyzed bacteria-host codivergence across six diverse anglerfish genera. Most of the anglerfish species surveyed shared a common species of symbiont. Only one other symbiont species was found, which had a specific relationship with one anglerfish species, Cryptopsaras couesii. Host and symbiont phylogenies lacked congruence, and there was no statistical support for codivergence broadly. We also recovered symbiont-specific gene sequences from water collected near hosts, suggesting environmental persistence of symbionts. Based on these results we conclude that diverse anglerfishes share symbionts that are acquired from the environment, and *For correspondence: that these bacteria have undergone extreme genome reduction although they are not vertically [email protected] (LJB); transmitted. -
Scientific Name Changed 2018
Fishes of the Maldives Indian Ocean 2018. Scientific names of Fishes updated by Charlotte Moritz. Rays by Khadeeja Ali, Marine Research Centre, Maldives. Family Page Common Name in book: Scientific Name in 2014 book: Scientific Name Changed 2018: Sharks and Rays 42 Pink Whipray Himantura fai Pateobatis fai 42 Mangrove or White-spotted whipray Himantura granulata Urogymnus granulatus 43 Jenkins Whipray Himantura jenkinsi Pateobatis jenkinsi 44 Blotched Fantail Ray Taeniura meyeni Taeniurops meyeni 45 White-spotted Eagle Ray Aetobatus narinari Aetobatus oscellatus 45 Ornate Eagle Ray Aetobatus vespertilio Aetomylaeus vespertilio Moray Eels 56 Peppered Moray Siderea picta Gymnothorax pictus 56 White-eyed Moray Siderea thyrsoidea Gymnothorax thyrsoideus Anglerfishes 65 Giant Anglerfish Antennarius commersoni Antennarius commerson 66 Spotfin Anglerfish Antennarius nummifer Antennatus nummifer 66 Freckled Anglerfish Antennarius coccineus Antennatus coccineus Lizardfishes 70 Red-marbled Lizardfish Synodus rubromarginatus Synodus rubromarmoratus Squirrelfishes 74 Speckled Squirrelfish Sargocentron punctatissimus Sargocentron punctatissimum Gurnards 85 Flying Gurnard Dactylopus orientalis Dactylopterus orientalis Flatheads 92 Fringe-lip Flathead Thysanophrys otaitensis Sunagocia otaitensis Groupers 101 Small-spotted Grouper Epinephelus caeruleopunctatus Epinephelus coeruleopunctatus Basslets 108 Flame Basslet Pseudanthias ignitis Pseudanthias ignitus Triple Tails 111 Triple Tail Lobotus surinamensis Lobotes surinamensis Emperors 136 Blue-line -
Training Manual Series No.15/2018
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by CMFRI Digital Repository DBTR-H D Indian Council of Agricultural Research Ministry of Science and Technology Central Marine Fisheries Research Institute Department of Biotechnology CMFRI Training Manual Series No.15/2018 Training Manual In the frame work of the project: DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals 2015-18 Training Manual In the frame work of the project: DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals 2015-18 Training Manual This is a limited edition of the CMFRI Training Manual provided to participants of the “DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals” organized by the Marine Biotechnology Division of Central Marine Fisheries Research Institute (CMFRI), from 2nd February 2015 - 31st March 2018. Principal Investigator Dr. P. Vijayagopal Compiled & Edited by Dr. P. Vijayagopal Dr. Reynold Peter Assisted by Aditya Prabhakar Swetha Dhamodharan P V ISBN 978-93-82263-24-1 CMFRI Training Manual Series No.15/2018 Published by Dr A Gopalakrishnan Director, Central Marine Fisheries Research Institute (ICAR-CMFRI) Central Marine Fisheries Research Institute PB.No:1603, Ernakulam North P.O, Kochi-682018, India. 2 Foreword Central Marine Fisheries Research Institute (CMFRI), Kochi along with CIFE, Mumbai and CIFA, Bhubaneswar within the Indian Council of Agricultural Research (ICAR) and Department of Biotechnology of Government of India organized a series of training programs entitled “DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals”. -
The Marine Biodiversity and Fisheries Catches of the Pitcairn Island Group
The Marine Biodiversity and Fisheries Catches of the Pitcairn Island Group THE MARINE BIODIVERSITY AND FISHERIES CATCHES OF THE PITCAIRN ISLAND GROUP M.L.D. Palomares, D. Chaitanya, S. Harper, D. Zeller and D. Pauly A report prepared for the Global Ocean Legacy project of the Pew Environment Group by the Sea Around Us Project Fisheries Centre The University of British Columbia 2202 Main Mall Vancouver, BC, Canada, V6T 1Z4 TABLE OF CONTENTS FOREWORD ................................................................................................................................................. 2 Daniel Pauly RECONSTRUCTION OF TOTAL MARINE FISHERIES CATCHES FOR THE PITCAIRN ISLANDS (1950-2009) ...................................................................................... 3 Devraj Chaitanya, Sarah Harper and Dirk Zeller DOCUMENTING THE MARINE BIODIVERSITY OF THE PITCAIRN ISLANDS THROUGH FISHBASE AND SEALIFEBASE ..................................................................................... 10 Maria Lourdes D. Palomares, Patricia M. Sorongon, Marianne Pan, Jennifer C. Espedido, Lealde U. Pacres, Arlene Chon and Ace Amarga APPENDICES ............................................................................................................................................... 23 APPENDIX 1: FAO AND RECONSTRUCTED CATCH DATA ......................................................................................... 23 APPENDIX 2: TOTAL RECONSTRUCTED CATCH BY MAJOR TAXA ............................................................................ -
Articles and Detrital Matter
Biogeosciences, 7, 2851–2899, 2010 www.biogeosciences.net/7/2851/2010/ Biogeosciences doi:10.5194/bg-7-2851-2010 © Author(s) 2010. CC Attribution 3.0 License. Deep, diverse and definitely different: unique attributes of the world’s largest ecosystem E. Ramirez-Llodra1, A. Brandt2, R. Danovaro3, B. De Mol4, E. Escobar5, C. R. German6, L. A. Levin7, P. Martinez Arbizu8, L. Menot9, P. Buhl-Mortensen10, B. E. Narayanaswamy11, C. R. Smith12, D. P. Tittensor13, P. A. Tyler14, A. Vanreusel15, and M. Vecchione16 1Institut de Ciencies` del Mar, CSIC. Passeig Mar´ıtim de la Barceloneta 37-49, 08003 Barcelona, Spain 2Biocentrum Grindel and Zoological Museum, Martin-Luther-King-Platz 3, 20146 Hamburg, Germany 3Department of Marine Sciences, Polytechnic University of Marche, Via Brecce Bianche, 60131 Ancona, Italy 4GRC Geociencies` Marines, Parc Cient´ıfic de Barcelona, Universitat de Barcelona, Adolf Florensa 8, 08028 Barcelona, Spain 5Universidad Nacional Autonoma´ de Mexico,´ Instituto de Ciencias del Mar y Limnolog´ıa, A.P. 70-305 Ciudad Universitaria, 04510 Mexico,` Mexico´ 6Woods Hole Oceanographic Institution, MS #24, Woods Hole, MA 02543, USA 7Integrative Oceanography Division, Scripps Institution of Oceanography, La Jolla, CA 92093-0218, USA 8Deutsches Zentrum fur¨ Marine Biodiversitatsforschung,¨ Sudstrand¨ 44, 26382 Wilhelmshaven, Germany 9Ifremer Brest, DEEP/LEP, BP 70, 29280 Plouzane, France 10Institute of Marine Research, P.O. Box 1870, Nordnes, 5817 Bergen, Norway 11Scottish Association for Marine Science, Scottish Marine Institute, Oban, -
The Ohio Journal of Science — Index 1951-1970
THE OHIO JOURNAL OF SCIENCE — INDEX 1951-1970 JANE L. FORSYTH AND CHRISTINE M. GORTA Department of Geology, Bowling Green State University, Bowling Green, Ohio 43403 INTRODUCTION It is almost 20 years since the first General Index to The Ohio Journal of Science, which covered the issues from the beginning (1900) through 1950, was published (Miller, E. M., 1953, published by The Ohio State University and The Ohio Academy of Science). It is time, therefore, for another general index, dealing with issues appearing since 1950. This is that index. Unlike the first index, there is no separate listing of full references by author; rather, this is simply a combining of all the entries from all the yearly indexes from 1951 through 1972. Basically these original entries remain unchanged here, though mistakes found in a few were corrected, and some have been slightly reworded in order to fit better into this multiple listing. Entries relating to book reviews occur only for the years of 1963 through 1970, because book reviews were not included in the earlier indexes. It should also be noted that, though a few of these books represent merely a reprinting of older, out-of-date books, these books are not so identified in the entries in this index. Preparation of this index has been mostly handled by Miss Christine M. Gorta, under the direction of Dr. Jane L. Forsyth, Editor of The Ohio Journal of Science from 1964 to 1973, but others have also contributed to this work—mainly Misses Lauran Boyles and Laura Witkowski—contributers whose efforts are gratefully acknowledged. -
University of Northern Iowa
PROCEEDINGS OF THE 129TH ANNUAL MEETING OF THE IOWA ACADEMY OF SCIENCE April 21—22, 2017 University of Northern Iowa Iowa Academy of Science Board of Directors Special Thanks Thank you to the following organizations & Melinda Coogan, President individuals for contributions to the meeting: Paul Bartelt, President Elect Carol Schutte, Past President University of Northern Iowa Directors (Year term ends) Mark A. Nook, President De Anna Tibben (2017) Mary Friedrich, Dinning Services Administration Jeffery Wilkerson (2017) Angie Sadler, Catering Manager Mark Anderson (2018) Marcy Seavey, STEM Coordinator, Academic Affairs Elizabeth Stone (2018) Roger Kueter, Associate Dean & Professor Lyn Countryman (2019) Neil Clopton, Information Technology Specialist Debora Christensen (2019) Jack Shafer, Building Services Assistant Manager Joshua Sebree, Ph.D. Asst. Professor Iowa Academy of Science Staff UNI Catering Staff UNI Facilities Staff Craig Johnson, Executive Director IJAS Symposium & Other Special Recognition Cory Johnson, Office Manager Iowa Space Grant Consortium/NASA Eve Halligan, Program Coordinator Bob Watson Allison Wold, Student Assistant Ryan Clark Erika Wold, Student Assistant Chad Heinzel, Ph.D. Iowa Academy of Science Laura Jackson, Ph.D. Deborah Lewis Tom Ervin Larry Stone Corporate Members Thank you to all section chairs, vice chairs and Platinum committee members and all who generously donated and/or purchased items in the IJAS Silent www.rockwellcollins.com/ Auction. And thank you to the many IAS Bronze www.hnicorp.com/ www.hy-vee.com/ members who provided speaker suggestions, volunteered to put up posters, and who volunteered throughout the year to help the bmcaggregates.com/ www.kemin.com/en Academy promote science in Iowa. Welcome from IAS President Dr. -
Inventory and Atlas of Corals and Coral Reefs, with Emphasis on Deep-Water Coral Reefs from the U
Inventory and Atlas of Corals and Coral Reefs, with Emphasis on Deep-Water Coral Reefs from the U. S. Caribbean EEZ Jorge R. García Sais SEDAR26-RD-02 FINAL REPORT Inventory and Atlas of Corals and Coral Reefs, with Emphasis on Deep-Water Coral Reefs from the U. S. Caribbean EEZ Submitted to the: Caribbean Fishery Management Council San Juan, Puerto Rico By: Dr. Jorge R. García Sais dba Reef Surveys P. O. Box 3015;Lajas, P. R. 00667 [email protected] December, 2005 i Table of Contents Page I. Executive Summary 1 II. Introduction 4 III. Study Objectives 7 IV. Methods 8 A. Recuperation of Historical Data 8 B. Atlas map of deep reefs of PR and the USVI 11 C. Field Study at Isla Desecheo, PR 12 1. Sessile-Benthic Communities 12 2. Fishes and Motile Megabenthic Invertebrates 13 3. Statistical Analyses 15 V. Results and Discussion 15 A. Literature Review 15 1. Historical Overview 15 2. Recent Investigations 22 B. Geographical Distribution and Physical Characteristics 36 of Deep Reef Systems of Puerto Rico and the U. S. Virgin Islands C. Taxonomic Characterization of Sessile-Benthic 49 Communities Associated With Deep Sea Habitats of Puerto Rico and the U. S. Virgin Islands 1. Benthic Algae 49 2. Sponges (Phylum Porifera) 53 3. Corals (Phylum Cnidaria: Scleractinia 57 and Antipatharia) 4. Gorgonians (Sub-Class Octocorallia 65 D. Taxonomic Characterization of Sessile-Benthic Communities 68 Associated with Deep Sea Habitats of Puerto Rico and the U. S. Virgin Islands 1. Echinoderms 68 2. Decapod Crustaceans 72 3. Mollusks 78 E. -
Regional Studies in Marine Science Assessing the Ichthyofaunal
Regional Studies in Marine Science 40 (2020) 101530 Contents lists available at ScienceDirect Regional Studies in Marine Science journal homepage: www.elsevier.com/locate/rsma Assessing the ichthyofaunal diversity and trophic level from trawl bycatch of Chennai Fishing Harbour, Southeast Coast of India ∗ Paramasivam Kodeeswaran a, , Natarajan Jayakumar a, Lakshmanan Ranjith b a Department of Fisheries Resource Management, Dr. M.G.R. Fisheries College and Research Institute, Ponneri – 601 204, Tamil Nadu, India b Marine Biodiversity Division, Tuticorin Regional Station, ICAR – Central Marine Fisheries Research Institute, Thoothukudi – 628 001, Tamil Nadu, India article info a b s t r a c t Article history: The present study aimed to document the temporal diversity and trophic level of ichthyofauna from the Received 14 May 2020 Chennai Fishing Harbour, Southeast coast of India. The trawl bycatch consists of 45,527 ichthyofauna Received in revised form 16 October 2020 individuals collected fortnightly during the period June 2018 to April 2019. The recorded ichthyofaunal Accepted 3 November 2020 diversity includes 156 species belonging to 2 classes, 14 orders, 66 families, and 119 genera. The order Available online 5 November 2020 Perciformes dominantes with 74 species (47%) followed by Scorpaeniformes (12%; 19 species) and Keywords: Tetraodontiformes (11%; 18 species). Temporal diversity analysis revealed that the maximum species Bottom trawling diversity was observed during the North-east monsoon (123 species) while the minimum was observed Bycatch during the post-monsoon (107 species) period. Numerically dominant bycatch species were found to be Biodiversity indices Leiognathus equulus (6%), Equulites lineolatus (5%), Gazza achlamys (5%), Karalla dussumieri, (4%) Otolithes Trophic level ruber (3%) and Nibea maculata (2%). -
Marine Biodiversity in India
MARINEMARINE BIODIVERSITYBIODIVERSITY ININ INDIAINDIA MARINE BIODIVERSITY IN INDIA Venkataraman K, Raghunathan C, Raghuraman R, Sreeraj CR Zoological Survey of India CITATION Venkataraman K, Raghunathan C, Raghuraman R, Sreeraj CR; 2012. Marine Biodiversity : 1-164 (Published by the Director, Zool. Surv. India, Kolkata) Published : May, 2012 ISBN 978-81-8171-307-0 © Govt. of India, 2012 Printing of Publication Supported by NBA Published at the Publication Division by the Director, Zoological Survey of India, M-Block, New Alipore, Kolkata-700 053 Printed at Calcutta Repro Graphics, Kolkata-700 006. ht³[eg siJ rJrJ";t Œtr"fUhK NATIONAL BIODIVERSITY AUTHORITY Cth;Govt. ofmhfUth India ztp. ctÖtf]UíK rvmwvtxe yÆgG Dr. Balakrishna Pisupati Chairman FOREWORD The marine ecosystem is home to the richest and most diverse faunal and floral communities. India has a coastline of 8,118 km, with an exclusive economic zone (EEZ) of 2.02 million sq km and a continental shelf area of 468,000 sq km, spread across 10 coastal States and seven Union Territories, including the islands of Andaman and Nicobar and Lakshadweep. Indian coastal waters are extremely diverse attributing to the geomorphologic and climatic variations along the coast. The coastal and marine habitat includes near shore, gulf waters, creeks, tidal flats, mud flats, coastal dunes, mangroves, marshes, wetlands, seaweed and seagrass beds, deltaic plains, estuaries, lagoons and coral reefs. There are four major coral reef areas in India-along the coasts of the Andaman and Nicobar group of islands, the Lakshadweep group of islands, the Gulf of Mannar and the Gulf of Kachchh . The Andaman and Nicobar group is the richest in terms of diversity. -
Environmental DNA and Specific Primers for Detecting the Invasive
sustainability Article Environmental DNA and Specific Primers for Detecting the Invasive Species Ectopleura crocea (Hydrozoa: Anthoathecata) in Seawater Samples Philjae Kim 1 , Tae Joong Yoon 2 and Sook Shin 2,3,* 1 Research & Development Division, National Science Museum, Daejeon 34143, Korea; [email protected] 2 Institute of Marine Life Resources, Sahmyook University, Seoul 01795, Korea; [email protected] 3 Department of Animal Biotechnology & Resource, Sahmyook University, Seoul 01795, Korea * Correspondence: [email protected]; Tel.: +82-2-3399-1717 Received: 31 January 2020; Accepted: 16 March 2020; Published: 18 March 2020 Abstract: In marine environments, environmental DNA (eDNA) can be effectively detected and possibly quantified when combined with molecular techniques, as demonstrated by several recent studies. In this study, we developed a species-specific primer set and a probe to detect the distribution and biomass of an invasive hydrozoan in South Korea, Ectopleura crocea. These molecular markers were designed to amplify a 187 bp region based on mitochondrial cytochrome c oxidase subunit I (COI) of E. crocea and were tested on seawater samples from 35 Korean harbors in 2017. Of the 35 sites we investigated, only nine harbors returned positive detections when using traditional survey methods, while surveys based on the use of eDNA techniques detected E. crocea DNA in all seawater samples. These results suggest that eDNA surveys based on molecular techniques are more effective at identifying species distribution and estimating biomass than traditional surveys based on visual assessment of morphology. Keywords: Ectopleura crocea; environmental DNA; invasive species; monitoring; species-specific markers; quantitative PCR 1. Introduction Environmental DNA (eDNA) refers to DNA that can be extracted from environmental samples such as soil, sediments, water, or snow [1], and species detection methods using eDNA have become new monitoring tools for the study and management of organisms in various ecosystems [2–4]. -
Nautilus Scuba Club Cairns
March 2018 Nautilus SCUBA Club Newsletter Cairns QLD Australia Dive Trips Club Meetings Guest Speakers Trip Reports Editor: Phil Woodhead Cover photo: Phil Woodhead Local dive trips and get together information March 2018 M T W T F S S For upcoming dive trip information keep an eye on your emails or visit the Nautilus website 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 Club meeting Junior Eisteddfod Association at 67 Greenslopes Street, Edge Hill. Starting with the BBQ at 7pm This months guest speaker will be Peter Mooney of Scubapix. Peter will be divulging the secrets of judging photo comp entries from a judges perspective, a valuable insight, not just for photographers but for everyone in the club to gain an understanding of what’s involved. Special dives will be organised in addition to the regular monthly day trips, these could be with Reel Cray-Zee, Rumrunner, and could be day trips or weekend trips to the reef or the Yongala. Better watch your emails for future announcements. UP COMING TRIP The much awaited Minke Whale dive trip is now open for booking. Friday 6th July to Tuesday morning 10th July 2017. Depart Friday 7th July 7:30 am, Arrive back Tuesday 11th 8.30am. 4 days & 4 nights Up to 16 dives / Minke Whale hang outs You make your reservation directly with the operator Deep Sea Divers Den, Tel (07) 4046 7333. You must be a current financial member of the club and advise of your Membership Number when booking AND show your Membership Card when boarding.