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1. Overview 2. Database Architecture 3. Example Tree 6. Mentorship Network Influences?

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1. Overview 2. Database Architecture 3. Example Tree 6. Mentorship Network Influences? Neurotree: Graphing the academic genealogy of neuroscience Stephen V. David1, Will Chertoff1, Titipat Achakulvisut2, Daniel Acuna2 1Oregon Health & Science University, 2Northwestern University 1. Overview 3. Example tree 4. Founding ancestors Neurotree (http://neurotree.org, [1]) is a collaborative, open-access Name N Resarch area Family tree The distance between two nodes can be Johannes Müller 7715 Physiology website that tracks and visualizes the academic genealogy and history P+ William Fitch measured by the number of mentorship Sir Charles Sherrington 4758 Neurophysiology of neuroscience. After 10 years of growth driven by user-generated Allen Hermann von Helmholtz 3048 Psychophysics University of P- steps connecting them through a Sir John Eccles 2998 Synapses content, the site has captured information about the mentorship of over Rudolf Oregon Ludwig Robert Samuel Alexander Sir Charles Medical common ancestor i(below). The list at Karl Lashley 2558 Learning and memory 80,000 neuroscientists. It has become a unique tool for a community of John Friedrich Karl Koch Sir Charles Kinnier Charles Gordon John Scott Sir Charles Harvey Sir Charles Karl Edgar School C+ Louis Agassiz 2241 Anatomy Sir Michael Newport Goltz Virchow Universität Scott Wilson Symonds Holmes Farquhar Sherrington Scott Williams Scott Spencer Wilder Douglas Frederic right shows the 30 most frequent primary researchers, students, journal editors, and the press. Once Foster Langley Kaiser-Wilhelms- Universität Berlin (ID Sherrington National Hospital, Queen National Hospital, Queen National Hospital, Queen Fulton Oxford Sherrington Cushing Sherrington Lashley Penfield Adrian Bremer William James 2183 Psychology C- Cambridge Cambridge Universität Straßburg Berlin Tree) Oxford Square, London Square, London Square, London Yale Oxford Yale Oxford Harvard McGill Cambridge Brussels William K common ancestors in a sample of Edgar Adrian 2123 Physiology linked into the tree, each researcher can be characterized by their Livingston James Angell 2083 Psychology Edward University of + 116,000 random node pairs. These Rudolf Virchow 1961 Pathology mentorship network, defined recursively as their graduate and Sir Charles Scott Derek Ernst G.T. R. Steven John Farquhar Donald Olding Giuseppe Oregon Sherrington Denny-Brown Liddell Creed Fulton Hebb Moruzzi Medical Carl Ludwig 1891 Physiology, anatomy Oxford Boston City Hospital and Harvard Medical School Oxford Oxford Yale McGill University of Pisa School individuals are some of the better known postdoctoral mentors and their mentors' own networks. - Stephen Kuffler 1890 Visual system historical figures in neuroscience. John Langley 1878 Autonomic nervous system Sir John Carew Birger Ronald Wilhelm Wundt 1796 Experimental psychology Recently, we have linked Neurotree researcher profiles to several Eccles Kaada Melzack ? Sir Michael Foster 1583 Neurophysiology ANU UiO McGill publication databases, including PubMed, ProQuest, and Scopus. Henry Bowditch 1403 Physiology Richard Franz Nissl 1212 Anatomy Each researcher can thus be characterized by unique fingerprints Per John G.M. 4500 Rudolf Wagner 1207 Phsyiology Andersen O'Keefe Morris derived from their mentorship network and publication metadata. We University of Oslo UCL Edinburgh Claude Bernard 954 Physiology Johann Clarus 940 Anatomy, surgery 3000 have begun analysis of mentorship network structure and the influence An individual’s mentors and trainees May-Britt Otto Meyerhof 755 Biochemistry Moser Friedrich Goltz 752 Physiology of this network on the research program of trainees. are displayed in a family tree format. Norwegian University of Science and Technology (Options) Pair cont Robert Bunsen 749 Inorganic chemistry 1500 Archibald Hill 747 Biophysics Driven by the enthusiasm of participants, Neurotree has spawned Andrew H. Retsina M Charlotte N Tor Li Richard James Kei M Laura Lee Hiroshi T Christian Heyne 672 Classical philology Bahle Meyer Boccara Stensola Lu Gardner Igarashi Colgin Ito John Fulton 600 Physiology Michigan, Ann Arbor MIT IST Austria Norwegian University of Science and Technology Norwegian University of Science and Technology NTNU UC Irvine UT Austin NTNU parallel sites for other fields that share a common platform and central 0 Rudolf Leuckart 585 Zoology 0 5 10 15 20 25 30 35 Jeffries Wyman 541 Comparative anatomy database under the umbrella of the Academic Family Tree Anita Y Sarah Ann Stephanie P Stephanie H Stanley P Brian J. Kevin Wood Sean Gregory Chenguang Distance through common anscestor Lin Gomez Runkle Chen Chen Gill Shading indicates similarity of publication Gereke Bieri Trettel Zheng Ignaz Döllinger 521 Comparative development MIT MIT MIT Stanford MIT MIT UT Austin (*50% of pairs have no common ancestor, not shown) (http://academictree.org). Future efforts will expand the network metadata (LSA) with the central node. Edward Titchener 513 Structuralism analysis to explore properties of the larger tree and interactions between its constituent fields. Data in the Academic Family Tree is shared via a Creative Commons license. Biographical details 5. Cluster analysis Users can search by name, institution, and/or research area Ploucquet/Oetinger Clusters were generated by spectral factorization [2], and the medicine NEUROTREE Search Tree Recent Additions Distance Analysis Help REPORT BUG Sign In Connections between 3-10 philosophy(1) clusters 11-25 cluster map was drawn using Graphviz (graphviz.org, [3]). 26+ Each cluster is a box labeled with the two member nodes with Holmes/Virchow Biographical information, anatom y Neuro ree May-Britt Moser, Ph.D. physiology(2) the strongest average connection strength across the whole useful weblinks, etc., if T Affiliations: Norwegian University of Science and Technology tree and by the two most common research areas in that Area: Spatial recognition availble Website: http://www.nobelprize.org/nobel_prizes/medicine/laureates/2014/may-britt-moser-facts.html Denny Brown/Sherrington neurology cluster. Clusters are sorted from top to bottom roughly from Bio: pharmacology(3) The Nobel Prize in Physiology or Medicine 2014 was divided, one half awarded to John O'Keefe, the other half jointly to May-Britt Moser and oldest to youngest. Edvard I. Moser "for their discoveries of cells that constitute a positioning system in the brain". Eccles/Kandel Jennings/Hecht Mean distance: 8.54 SNBCP Automatically damage & disease biology detected publications plasticity(6 ) marine biology(5) Tree Distance to... Nearest Nobel Oldest ancestor PubMed Report error are curated by users. Lashley/Hopkins Watson/Freud behavioral neuroendocrinology reading and spelling acquisition and disability neuroendocrinology(7) literacy(4) Sign in to add mentor Parents Publications (Beta) We are testing a new system for linking publications to authors. Griffin/Marle r Miller/Jarvik Terman/Merrill Per Andersen grad student University of Oslo You can help! If you notice any innacuracies, please sign in evolution motivation damage & disease and mark papers as correct or incorrect matches. development(10) emotion(8) traumatic brain injury(9) 2. Database architecture Richard G.M. Morris post-doc Edinburgh Rowland DC, Roudi Y, Moser MB, Moser EI. (2016) John O'Keefe post-doc UCL Ten Years of Grid Cells. Annual Review of Stevens/Nicholls Bradbury/Tinbergen Solomon/Zandbelt Tolman/Campbell Neuroscience development m athematics anxiety disorders anxiety damage & disease(11) physics(12) assessment(14) anxiety disorders(13) Miao C, Cao Q, Ito HT, Yamahachi H, Witter MP, Moser Sign in to add trainee MB, Moser EI. (2015) Hippocampal Remapping after Children Neurotree has been developed entirely using open-source software. Partial Inactivation of the Medial Entorhinal Cortex. Neuron. 88: 590-603 Lapham/RichardsonJr Tomer/David Grundfest/Lau Monod/Brown Spitzer/Bixby Bower/ThompsonSchill Andrew H. research 2015- Kavli Institute for Systems Neuroscience and Centre for Neural neuropathology marine ecology calcium signaling traditional chinese medicine development memory Data about researchers and the mentor relationships between them damage & disease(24) community ecology(57) neurotransmitter-gated ion channels(16) cancer(18) steroid regulation of ion channels(27) attention(15) Bahle assistant 2016 Computation, NTNU, Trondheim, Norway Lu L, Igarashi KM, Witter MP, Moser EI, Moser MB. (2015) Topography of Place Maps along the CA3-to- are stored in a database (MySQL), and the web interface is Retsina M grad Norwegian University of Science and Technology CA2 Axis of the Hippocampus. Neuron. 87: 1078-92 Meyer student Corwin/Thoreson Sejnowski/Merzenich Postle/Fitts generated dynamically by a scripting system on the web server Kropff E, Carmichael JE, Moser MB, Moser EI. (2015) biomechanics visual syste m natural language processing Charlotte N grad 2006- Kavli Institute for Systems Neuroscience and Centre for Neural traumatic brain injury(52) computation & theory(17) human factors(21) Speed cells in the medial entorhinal cortex. Nature (apache/PHP). Boccara student 2012 Computation, NTNU, Trondheim, Norway Ito HT, Zhang SJ, Witter MP, Moser EI, Moser MB. Tor Stensola grad 2008- Norwegian University of Science and Technology (2015) A prefrontal-thalamo-hippocampal circuit for student 2014 Laughlin/Dickinson Holy/Malm o Thompson/Brown Phillips/Fetz goal-directed spatial navigation. Nature. 522: 50-5 biomechanics behavioral neuroendocrinology behavior motor system neurobiology(39) animal behavior(45) memory(19) spinal cord(22) Li Lu grad 2009- Norwegian University
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