Publications for Patrick Tam 2020 2019 2018
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Publications for Patrick Tam 2021 Kim, H., Tam, P., Yang, P. (2021). Defining cell identity 2019 beyond the premise of differential gene expression. Cell Regeneration, 10(1), 20-3 pages. <a Osteil, P., Studdert, J., Goh, H., Wilkie, E., Fan, X., Khoo, P., href="http://dx.doi.org/10.1186/s13619-021-00083-7">[More Peng, G., Salehin, N., Knowles, H., Han, J., Fossat, N., Tam, P., Information]</a> et al (2019). Dynamics of Wnt activity on the acquisition of ectoderm potency in epiblast stem cells. Development, 146(7), Rossant, J., Tam, P. (2021). Opportunities and challenges with 1-14. <a href="http://dx.doi.org/10.1242/dev.172858">[More stem cell-based embryo models. Stem Cell Reports, 16(5), 1031- Information]</a> 1038. <a href="http://dx.doi.org/10.1016/j.stemcr.2021.02.002">[More Gao, X., Nowak-Imialek, M., Chen, X., Chen, D., Herrmann, Information]</a> D., Ruan, D., Chen, A., Eckersley-Maslin, M., Ahmad, S., Lee, Y., Tam, P., et al (2019). Establishment of porcine and human Fan, X., Masamsetti, V., Sun, J., Engholm-Keller, K., Osteil, P., expanded potential stem cells. Nature Cell Biology, 21(6), 687- Studdert, J., Graham, M., Fossat, N., Tam, P. (2021). TWIST1 699. <a href="http://dx.doi.org/10.1038/s41556-019-0333- and chromatin regulatory proteins interact to guide neural crest 2">[More Information]</a> cell differentiation. eLife, 10, e62873. <a href="http://dx.doi.org/10.7554/eLife.62873">[More Sibbritt, T., Osteil, P., Fan, X., Sun, J., Salehin, N., Knowles, Information]</a> H., Shen, J., Tam, P. (2019). Gene Editing of Mouse Embryonic and Epiblast Stem Cells. In Ivan Bertoncello (Eds.), Mouse 2020 Cell Culture: Methods and Protocols, (pp. 77-95). New York: Springer. <a href="http://dx.doi.org/10.1007/978-1-4939-9086- Peng, G., Suo, S., Cui, G., Yu, F., Wang, R., Chen, J., Chen, S., 3_6">[More Information]</a> Liu, Z., Chen, G., Qian, Y., Tam, P., et al (2020). Author Correction: Molecular architecture of lineage allocation and McMahon, R., Sibbritt, T., Salehin, N., Osteil, P., Tam, P. tissue organization in early mouse embryo. Nature, 577(7791), (2019). Mechanistic insights from the LHX1-driven molecular E6. <a href="http://dx.doi.org/10.1038/s41586-019-1887- network in building the embryonic head. Development, Growth 7">[More Information]</a> and Differentiation, 61(5), 327-336. <a href="http://dx.doi.org/10.1111/dgd.12609">[More Tam, P., Ho, J. (2020). Cellular diversity and lineage trajectory: Information]</a> insights from mouse single cell transcriptomes. Development, 147(2), dev179788. <a Tam, P. (2019). Modeling the early development of a primate href="http://dx.doi.org/10.1242/dev.179788">[More embryo. Science, 366(6467), 798-799. <a Information]</a> href="http://dx.doi.org/10.1126/science.aaz6976">[More Information]</a> Shim, W., Sinniah, E., Xu, J., Vitrinel, B., Alexanian, M., Andreoletti, G., Shen, S., Sun, Y., Balderson, B., Boix, C., Peng, G., Suo, S., Cui, G., Yu, F., Wang, R., Chen, J., Chen, S., Tam, P., et al (2020). Conserved Epigenetic Regulatory Logic Liu, Z., Chen, G., Qian, Y., Tam, P., et al (2019). Molecular Infers Genes Governing Cell Identity. Cell Systems, 11(6), 625- architecture of lineage allocation and tissue organization in 639.e13. <a early mouse embryo. Nature, 572, 528-532. <a href="http://dx.doi.org/10.1016/j.cels.2020.11.001">[More href="http://dx.doi.org/10.1038/s41586-019-1469-8">[More Information]</a> Information]</a> Hamada, H., Tam, P. (2020). Diversity of left-right symmetry Cheng, S., Pei, Y., He, L., Peng, G., Reinius, B., Tam, P., Jing, breaking strategy in animals. F1000Research, 9, 123. <a N., Deng, Q. (2019). Single-Cell RNA-Seq Reveals Cellular href="http://dx.doi.org/10.12688/f1000research.21670.1">[Mor Heterogeneity of Pluripotency Transition and X Chromosome e Information]</a> Dynamics during Early Mouse Development. Cell Reports, 26(10), 2593-2607.e3. <a Salehin, N., Tam, P., Osteil, P. (2020). Prenet: Predictive href="http://dx.doi.org/10.1016/j.celrep.2019.02.031">[More network from ATAC-SEQ data. Journal of Bioinformatics and Information]</a> Computational Biology, 18(1), 2040003. <a href="http://dx.doi.org/10.1142/S021972002040003X">[More Humphreys, D., Fossat, N., Demuth, M., Tam, P., Ho, J. (2019). Information]</a> Ularcirc: visualization and enhanced analysis of circular RNAs via back and canonical forward splicing. Nucleic Acids Kim, H., Osteil, P., Humphrey, S., Cinghu, S., Oldfield, A., Research, 47(20), 1-17. <a Patrick, E., Wilkie, E., Peng, G., Suo, S., Jothi, R., Tam, P., href="http://dx.doi.org/10.1093/nar/gkz718">[More Yang, P. (2020). Transcriptional network dynamics during the Information]</a> progression of pluripotency revealed by integrative statistical learning. Nucleic Acids Research, 48(4), 1828-1842. <a 2018 href="http://dx.doi.org/10.1093/nar/gkz1179">[More Information]</a> Sibbritt, T., Ip, C., Khoo, P., Wilkie, E., Jones, V., Sun, J., Shen, J., Peng, G., Han, J., Jing, N., Osteil, P., Tam, P., Fossat, Fan, X., Waardenberg, A., Demuth, M., Osteil, P., Sun, J., N., et al (2018). A gene regulatory network anchored by LIM Loebel, D., Graham, M., Tam, P., Fossat, N. (2020). Twist1 homeobox 1 for embryonic head development. Genesis, 56(9), homodimers and heterodimers orchestrate lineage-specific 1-13. <a href="http://dx.doi.org/10.1002/dvg.23246">[More differentiation. Molecular and Cellular Biology, 40(11). <a Information]</a> href="http://dx.doi.org/10.1128/MCB.00663-19">[More Information]</a> Rossant, J., Tam, P. (2018). Exploring early human embryo development. Science, 360(6393), 1075-1076. <a differentiation. Cell Stem Cell, 20(1), 18-28. <a href="http://dx.doi.org/10.1126/science.aas9302">[More href="http://dx.doi.org/10.1016/j.stem.2016.12.004">[More Information]</a> Information]</a> McDonald, M., Morse, A., Schindeler, A., Mikulec, K., Zamir, L., Singh, R., Nathan, E., Patrick, R., Yifa, O., Yahalom- Peacock, L., Cheng, T., Bobyn, J., Lee, L., Baldock, P., Ronen, Y., Arraf, A., Schultheiss, T., Suo, S., Han, J., Tam, P., Croucher, P., Tam, P., Little, D. (2018). Homozygous Dkk1 et al (2017). Nkx2.5 marks angioblasts that contribute to Knockout Mice Exhibit High Bone Mass Phenotype Due to hemogenic endothelium of the endocardium and dorsal aorta. Increased Bone Formation. Calcified Tissue International, eLife, 6, 1-31. <a 102(1), 105-116. <a href="http://dx.doi.org/10.1007/s00223- href="http://dx.doi.org/10.7554/eLife.20994">[More 017-0338-4">[More Information]</a> Information]</a> Cui, G., Suo, S., Wang, R., Qian, Y., Han, J., Peng, G., Tam, P., Savatier, P., Osteil, P., Tam, P. (2017). Pluripotency of embryo- Jing, N. (2018). Mouse gastrulation: Attributes of transcription derived stem cells from rodents, lagomorphs, and primates: factor regulatory network for epiblast patterning. Development, Slippery slope, terrace and cliff. Stem Cell Research, 19, 104- Growth and Differentiation, 60(8), 463-472. <a 112. <a href="http://dx.doi.org/10.1111/dgd.12568">[More href="http://dx.doi.org/10.1016/j.scr.2017.01.008">[More Information]</a> Information]</a> Yu, Z., Tang, P., Wang, J., Bao, S., Shieh, J., Leung, A., Zhang, Chiang, I., Fritzsche, M., Thievend, C., Neal, A., Holmes, K., Z., Gao, F., Wong, S., Hui, A., Tam, P. (2018). Mutations in Lagendijk, A., Overman, J., D'Angelo, D., Omini, A., Tam, P. Hnrnpa1 cause congenital heart defects. JCI Insight, 3(2), 1-21. (2017). SoxF factors induce Notch1 expression via direct <a href="http://dx.doi.org/10.1172/jci.insight.98555">[More transcriptional regulation during early arterial development. Information]</a> Development, 144(20), 3847-3848. <a href="http://dx.doi.org/10.1242/dev.159715">[More Friedman, C., Nguyen, Q., Lukowski, S., Helfer, A., Chiu, H., Information]</a> Miklas, J., Levy, S., Suo, S., Han, J., Osteil, P., Tam, P., et al (2018). Single-Cell Transcriptomic Analysis of Cardiac Chen, J., Suo, S., Tam, P., Han, J., Peng, G., Jing, N. (2017). Differentiation from Human PSCs Reveals HOPX-Dependent Spatial transcriptomic analysis of cryosectioned tissue samples Cardiomyocyte Maturation. Cell Stem Cell, 23(4), 586-598. <a with Geo-seq. Nature Protocols, 12(3), 566-580. <a href="http://dx.doi.org/10.1016/j.stem.2018.09.009">[More href="http://dx.doi.org/10.1038/nprot.2017.003">[More Information]</a> Information]</a> Liu, C., Wang, R., He, Z., Osteil, P., Wilkie, E., Yang, X., 2016 Chen, J., Cui, G., Guo, W., Chen, Y., Tam, P., et al (2018). Suppressing Nodal Signaling Activity Predisposes Ectodermal Zheng, G., Zhang, J., Zhao, H., Wang, H., Pang, M., Qiao, X., Differentiation of Epiblast Stem Cells. Stem Cell Reports, Lee, S., Hsu, T., Tan, T., Lyons, J., Zhao, Y., Loebel, D., Wang, 11(1), 43-57. <a Y., Wang, Y., Wang, Y., Cao, Q., Wang, C., Lee, V., Tam, P., href="http://dx.doi.org/10.1016/j.stemcr.2018.05.019">[More Harris, D., et al (2016). a3 Integrin of Cell-Cell Contact Information]</a> Mediates Kidney Fibrosis by Integrin-Linked Kinase in Proximal Tubular E-Cadherin Deficient Mice. American 2017 Journal of Pathology, 186(7), 1847-1860. <a href="http://dx.doi.org/10.1016/j.ajpath.2016.03.015">[More Yang, J., Ryan, D., Wang, W., Tsang, J., Lan, G., Masaki, H., Information]</a> Gao, X., Antunes, L., Yu, Y., Tam, P., et al (2017). Establishment of mouse expanded potential stem cells. Nature, Kondo, M., Gray, L., Pelka, G., Leang, S., Christodoulou, J., 550(7676), 393-397. <a Tam, P., Hannan, A. (2016). Affective dysfunction in a mouse href="http://dx.doi.org/10.1038/nature24052">[More model of Rett syndrome: Therapeutic effects of environmental Information]</a> stimulation and physical activity.