The Significance of Mesophilic Aeromonas Spp. in Minimally Processed Ready-To-Eat Seafood
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Comparative Genomics of the Aeromonadaceae Core Oligosaccharide Biosynthetic Regions
CORE Metadata, citation and similar papers at core.ac.uk Provided by Diposit Digital de la Universitat de Barcelona International Journal of Molecular Sciences Article Comparative Genomics of the Aeromonadaceae Core Oligosaccharide Biosynthetic Regions Gabriel Forn-Cuní, Susana Merino and Juan M. Tomás * Department of Genética, Microbiología y Estadística, Universidad de Barcelona, Diagonal 643, 08071 Barcelona, Spain; [email protected] (G.-F.C.); [email protected] (S.M.) * Correspondence: [email protected]; Tel.: +34-93-4021486 Academic Editor: William Chi-shing Cho Received: 7 February 2017; Accepted: 26 February 2017; Published: 28 February 2017 Abstract: Lipopolysaccharides (LPSs) are an integral part of the Gram-negative outer membrane, playing important organizational and structural roles and taking part in the bacterial infection process. In Aeromonas hydrophila, piscicola, and salmonicida, three different genomic regions taking part in the LPS core oligosaccharide (Core-OS) assembly have been identified, although the characterization of these clusters in most aeromonad species is still lacking. Here, we analyse the conservation of these LPS biosynthesis gene clusters in the all the 170 currently public Aeromonas genomes, including 30 different species, and characterise the structure of a putative common inner Core-OS in the Aeromonadaceae family. We describe three new genomic organizations for the inner Core-OS genomic regions, which were more evolutionary conserved than the outer Core-OS regions, which presented remarkable variability. We report how the degree of conservation of the genes from the inner and outer Core-OS may be indicative of the taxonomic relationship between Aeromonas species. Keywords: Aeromonas; genomics; inner core oligosaccharide; outer core oligosaccharide; lipopolysaccharide 1. -
University of Cincinnati
UNIVERSITY OF CINCINNATI Date: February 22, 2007 I, _ Samuel Lee Hayes________________________________________, hereby submit this work as part of the requirements for the degree of: Doctor of Philosophy in: Biological Sciences It is entitled: Response of Mammalian Models to Exposure of Bacteria from the Genus Aeromonas Evaluated using Transcriptional Analysis and Conjectures on Disease Mechanisms This work and its defense approved by: Chair: _Brian K. Kinkle _Dennis W. Grogan _Richard D. Karp _Mario Medvedovic _Stephen J. Vesper Response of Mammalian Models to Exposure of Bacteria from the Genus Aeromonas Evaluated using Transcriptional Analysis and Conjectures on Disease Mechanisms A dissertation submitted to the Division of Graduate Studies and Research of the University of Cincinnati in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY in the Department of Biological Sciences of the College of Arts and Sciences 2007 by Samuel Lee Hayes B.S. Ohio University, 1978 M.S. University of Cincinnati, 1986 Committee Chair: Dr. Brian K. Kinkle Abstract The genus Aeromonas contains virulent bacteria implicated in waterborne disease, as well as avirulent strains. One of my research objectives was to identify and characterize host- pathogen relationships specific to Aeromonas spp. Aeromonas virulence was assessed using changes in host mRNA expression after infecting cell cultures and live animals. Messenger RNA extracts were hybridized to murine genomic microarrays. Initially, these model systems were infected with two virulent A. hydrophila strains, causing up-regulation of over 200 and 50 genes in animal and cell culture tissues, respectively. Twenty-six genes were common between the two model systems. The live animal model was used to define virulence for many Aeromonas spp. -
Antibiotic and Heavy-Metal Resistance in Motile Aeromonas Strains Isolated from Fish
Vol. 8(17), pp. 1793-1797, 23 April, 2014 DOI: 10.5897/AJMR2013.6339 Article Number: 71C59D844175 ISSN 1996-0808 African Journal of Microbiology Research Copyright © 2014 Author(s) retain the copyright of this article http://www.academicjournals.org/AJMR Full Length Research Paper Antibiotic and heavy-metal resistance in motile Aeromonas strains isolated from fish Seung-Won Yi1#, Dae-Cheol Kim2#, Myung-Jo You1, Bum-Seok Kim1, Won-Il Kim1 and Gee-Wook Shin1* 1Bio-safety Research Institute and College of Veterinary Medicine, Chonbuk National University, Jeonju,561-756, Republic of Korea. 2College of Agriculture and Life Sciences, Chonbuk National University, Jeonju, Korea. Received 9 September, 2013; Accepted 26 February, 2014 Aeromonas spp. have been recognized as important pathogens causing massive economic losses in the aquaculture industry. This study examined the resistance of fish Aeromonas isolates to 15 antibiotics and 3 heavy metals. Based on the results, it is suggested that selective antibiotheraphy should be applied according to the Aeromonas species and the cultured-fish species. In addition, cadmium-resistant strains were associated with resistance to amoxicillin/clavulanic acid, suggesting that cadmium is a global factor related to co-selection of antibiotic resistance in Aeromonas spp. Key words: Aeromonas spp., antibiotic resistance, heavy-metal resistance, aquaculture, multi-antibiotics resistance. INTRODUCTION Motile Aeromonas spp. is widely distributed in aquatic presence of multi-antibiotics resistance (MAR) strains. environments and is a member of the bacterial flora in Recent phylogenetic analysis has revealed high taxo- aquatic animals (Roberts, 2001; Janda and Abbott, 2010). nomical complexities in the genus Aeromonas, with In aquaculture, the bacterium is an emergent pathogen resulting ramifications in Aeromonas spp. -
CHAPTER 1: General Introduction and Aims 1.1 the Genus Cronobacter: an Introduction
Diversity and virulence of the genus Cronobacter revealed by multilocus sequence typing (MLST) and comparative genomic analysis Susan Manju Joseph A thesis submitted in partial fulfilment of the requirements of Nottingham Trent University for the degree of Doctor of Philosophy July 2013 Experimental work contained in this thesis is original research carried out by the author, unless otherwise stated, in the School of Science and Technology at the Nottingham Trent University. No material contained herein has been submitted for any other degree, or at any other institution. This work is the intellectual property of the author. You may copy up to 5% of this work for private study, or personal, non-commercial research. Any re-use of the information contained within this document should be fully referenced, quoting the author, title, university, degree level and pagination. Queries or requests for any other use, or if a more substantial copy is required, should be directed in the owner(s) of the Intellectual Property Rights. Susan Manju Joseph ACKNOWLEDGEMENTS I would like to express my immense gratitude to my supervisor Prof. Stephen Forsythe for having offered me the opportunity to work on this very exciting project and for having been a motivating and inspiring mentor as well as friend through every stage of this PhD. His constant encouragement and availability for frequent meetings have played a very key role in the progress of this research project. I would also like to thank my co-supervisors, Dr. Alan McNally and Prof. Graham Ball for all the useful advice, guidance and participation they provided during the course of this PhD study. -
Delineation of Aeromonas Hydrophila Pathotypes by Dectection of Putative Virulence Factors Using Polymerase Chain Reaction and N
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by DigitalCommons@Kennesaw State University Kennesaw State University DigitalCommons@Kennesaw State University Master of Science in Integrative Biology Theses Biology & Physics Summer 7-20-2015 Delineation of Aeromonas hydrophila Pathotypes by Dectection of Putative Virulence Factors using Polymerase Chain Reaction and Nematode Challenge Assay John Metz Kennesaw State University, [email protected] Follow this and additional works at: http://digitalcommons.kennesaw.edu/integrbiol_etd Part of the Integrative Biology Commons Recommended Citation Metz, John, "Delineation of Aeromonas hydrophila Pathotypes by Dectection of Putative Virulence Factors using Polymerase Chain Reaction and Nematode Challenge Assay" (2015). Master of Science in Integrative Biology Theses. Paper 7. This Thesis is brought to you for free and open access by the Biology & Physics at DigitalCommons@Kennesaw State University. It has been accepted for inclusion in Master of Science in Integrative Biology Theses by an authorized administrator of DigitalCommons@Kennesaw State University. For more information, please contact [email protected]. Delineation of Aeromonas hydrophila Pathotypes by Detection of Putative Virulence Factors using Polymerase Chain Reaction and Nematode Challenge Assay John Michael Metz Submitted in partial fulfillment of the requirements for the Master of Science Degree in Integrative Biology Thesis Advisor: Donald J. McGarey, Ph.D Department of Molecular and Cellular Biology Kennesaw State University ABSTRACT Aeromonas hydrophila is a Gram-negative, bacterial pathogen of humans and other vertebrates. Human diseases caused by A. hydrophila range from mild gastroenteritis to soft tissue infections including cellulitis and acute necrotizing fasciitis. When seen in fish it causes dermal ulcers and fatal septicemia, which are detrimental to aquaculture stocks and has major economic impact to the industry. -
Supplementary Information for Microbial Electrochemical Systems Outperform Fixed-Bed Biofilters for Cleaning-Up Urban Wastewater
Electronic Supplementary Material (ESI) for Environmental Science: Water Research & Technology. This journal is © The Royal Society of Chemistry 2016 Supplementary information for Microbial Electrochemical Systems outperform fixed-bed biofilters for cleaning-up urban wastewater AUTHORS: Arantxa Aguirre-Sierraa, Tristano Bacchetti De Gregorisb, Antonio Berná, Juan José Salasc, Carlos Aragónc, Abraham Esteve-Núñezab* Fig.1S Total nitrogen (A), ammonia (B) and nitrate (C) influent and effluent average values of the coke and the gravel biofilters. Error bars represent 95% confidence interval. Fig. 2S Influent and effluent COD (A) and BOD5 (B) average values of the hybrid biofilter and the hybrid polarized biofilter. Error bars represent 95% confidence interval. Fig. 3S Redox potential measured in the coke and the gravel biofilters Fig. 4S Rarefaction curves calculated for each sample based on the OTU computations. Fig. 5S Correspondence analysis biplot of classes’ distribution from pyrosequencing analysis. Fig. 6S. Relative abundance of classes of the category ‘other’ at class level. Table 1S Influent pre-treated wastewater and effluents characteristics. Averages ± SD HRT (d) 4.0 3.4 1.7 0.8 0.5 Influent COD (mg L-1) 246 ± 114 330 ± 107 457 ± 92 318 ± 143 393 ± 101 -1 BOD5 (mg L ) 136 ± 86 235 ± 36 268 ± 81 176 ± 127 213 ± 112 TN (mg L-1) 45.0 ± 17.4 60.6 ± 7.5 57.7 ± 3.9 43.7 ± 16.5 54.8 ± 10.1 -1 NH4-N (mg L ) 32.7 ± 18.7 51.6 ± 6.5 49.0 ± 2.3 36.6 ± 15.9 47.0 ± 8.8 -1 NO3-N (mg L ) 2.3 ± 3.6 1.0 ± 1.6 0.8 ± 0.6 1.5 ± 2.0 0.9 ± 0.6 TP (mg -
Table S4. Phylogenetic Distribution of Bacterial and Archaea Genomes in Groups A, B, C, D, and X
Table S4. Phylogenetic distribution of bacterial and archaea genomes in groups A, B, C, D, and X. Group A a: Total number of genomes in the taxon b: Number of group A genomes in the taxon c: Percentage of group A genomes in the taxon a b c cellular organisms 5007 2974 59.4 |__ Bacteria 4769 2935 61.5 | |__ Proteobacteria 1854 1570 84.7 | | |__ Gammaproteobacteria 711 631 88.7 | | | |__ Enterobacterales 112 97 86.6 | | | | |__ Enterobacteriaceae 41 32 78.0 | | | | | |__ unclassified Enterobacteriaceae 13 7 53.8 | | | | |__ Erwiniaceae 30 28 93.3 | | | | | |__ Erwinia 10 10 100.0 | | | | | |__ Buchnera 8 8 100.0 | | | | | | |__ Buchnera aphidicola 8 8 100.0 | | | | | |__ Pantoea 8 8 100.0 | | | | |__ Yersiniaceae 14 14 100.0 | | | | | |__ Serratia 8 8 100.0 | | | | |__ Morganellaceae 13 10 76.9 | | | | |__ Pectobacteriaceae 8 8 100.0 | | | |__ Alteromonadales 94 94 100.0 | | | | |__ Alteromonadaceae 34 34 100.0 | | | | | |__ Marinobacter 12 12 100.0 | | | | |__ Shewanellaceae 17 17 100.0 | | | | | |__ Shewanella 17 17 100.0 | | | | |__ Pseudoalteromonadaceae 16 16 100.0 | | | | | |__ Pseudoalteromonas 15 15 100.0 | | | | |__ Idiomarinaceae 9 9 100.0 | | | | | |__ Idiomarina 9 9 100.0 | | | | |__ Colwelliaceae 6 6 100.0 | | | |__ Pseudomonadales 81 81 100.0 | | | | |__ Moraxellaceae 41 41 100.0 | | | | | |__ Acinetobacter 25 25 100.0 | | | | | |__ Psychrobacter 8 8 100.0 | | | | | |__ Moraxella 6 6 100.0 | | | | |__ Pseudomonadaceae 40 40 100.0 | | | | | |__ Pseudomonas 38 38 100.0 | | | |__ Oceanospirillales 73 72 98.6 | | | | |__ Oceanospirillaceae -
10.1016/J.Ijfoodmicro.2018.07.033 Antibiotic Resistance of Aeromonas
10.1016/j.ijfoodmicro.2018.07.033 Antibiotic resistance of Aeromonas ssp. strains isolated from Sparus aurata reared in Italian mariculture farms C. Scaranoa, F. Pirasa, S. Virdisa, G. Ziinob, R. Nuvolonic, A. Dalmassod, E.P.L. De Santisa, C. Spanua a Department of Veterinary Medicine, University of Sassari, Via Vienna 2, 07100 Sassari, Italy b Department of Veterinary Sciences, University of Messina, Italy c Department of Veterinary Sciences, University of Pisa, Italy d Department of Veterinary Sciences, University of Turin, Italy Abstract Selective pressure in the aquatic environment of intensive fish farms leads to acquired antibiotic resistance. This study used the broth microdilution method to measure minimum inhibitory concentrations (MICs) of 15 antibiotics against 104 Aeromonas spp. strains randomly selected among bacteria isolated from Sparus aurata reared in six Italian mariculture farms. The antimicrobial agents chosen were representative of those primarily used in aquaculture and human therapy and included oxolinic acid (OXA), ampicillin (AM), amoxicillin (AMX), cephalothin (CF), cloramphenicol (CL), erythromycin (E), florfenicol (FF), flumequine (FM), gentamicin (GM), kanamycin (K), oxytetracycline (OT), streptomycin (S), sulfadiazine (SZ), tetracycline (TE) and trimethoprim (TMP). The most prevalent species selected from positive samples was Aeromonas media (15 strains). The bacterial strains showed high resistance to SZ, AMX, AM, E, CF, S and TMP antibiotics. Conversely, TE and CL showed MIC90 values lower than breakpoints for susceptibility and many isolates were susceptible to OXA, GM, FF, FM, K and OT antibiotics. Almost all Aeromonas spp. strains showed multiple antibiotic resistance. Epidemiological cut-off values (ECVs) for Aeromonas spp. were based on the MIC distributions obtained. -
Aeromonas Veronii Biovar Sobria Gastoenteritis: a Case Report
iMedPub Journals 2011 ARCHIVES OF CLINICAL MICROBIOLOGY Vol. 2 No. 5:3 This article is available from: http://www.acmicrob.com doi: 10:3823/240 Aeromonas veronii biovar sobria gastoenteritis: a case report Afreenish Hassan*, Javaid Usman, Fatima Kaleem, National University of Sciences and Technology, Islamabad, Pakistan Maria Omair, Ali Khalid, Muhammad Iqbal * Corresponding author: Dr Afreenish Hassan Abstract E-mail: [email protected] Aeromonas veronii biovar sobria is associated with various infections in humans. Isola- tion of Aeromonas sobria in patients with gastroenteritis is not unusual. We describe a case of Aeromonas veronii biovar sobria gastroenteritis in a young patient. This is the first documented case reported from Pakistan. Introduction were collected for laboratory investigation. He was shifted to the medical ward and was started on Inj. Ciprofloxacin 200mg The genus Aeromonas include many species but the most twice daily, infusion Metronidazole 500mg three times a day, common ones associated with human infections are Aeromo- injection Maxolon 10 mg three times a day. He was rehydrated nas veronii, Aeromons hydrophila, Aeromonas jandaei, Aeromo- with infusion Normal saline 1000ml once daily. He was advised nas caviae and Aeromonas schubertii [1]. The diseases caused to take orally Oral Rehydration salt (ORS). His blood complete by Aeromonas include gastroenteritis, ear and wound infec- picture and urine routine examination was unremarkable ex- tions, cellulitis, urinary tract infections and septicemia [2]. We cept mildly raised neutrophil count in blood (73%) (Table 1,2,3). describe here a case of Aeromonas veronii biovar sobria gastro- On gross examination, his stool sample was of green in colour, enteritis in a young patient. -
Pdf 873.73 K
Zagazig J. Agric. Res., Vol. 47 No. (1) 2020 179 -179197 Biotechnology Research http:/www.journals.zu.edu.eg/journalDisplay.aspx?Journalld=1&queryType=Master ISOLATION OF Aeromonas BACTERIOPHAGE AvF07 FROM FISH AND ITS APPLICATION FOR BIOLOGICAL CONTROL OF MULTIDRUG RESISTANT LOCAL Aeromonas veronii AFs 2 Nahed A. El-Wafai *, Fatma I. El-Zamik, S.A.M. Mahgoub and Alaa M.S. Atia Agric. Microbiol. Dept., Fac. Agric., Zagazig Univ., Egypt Received: 25/09/2019 ; Accepted: 25/11/2019 ABSTRACT: Aeromonas isolates from Nile tilapia fish, fish ponds and River water were identified as well as their bacteriophage specific. Also evaluation of antibacterial effect of both nanoparticles and phage therapy against the pathogenic Aeromonas veronii AFs 2. Differentiation of Aeromonas spp. was done on the basis of 25 different biochemical tests and confirmed by sequencing of 16s rRNA gene as (A. caviae AFg, A. encheleia AWz, A. molluscorum AFm, A. salmonicida AWh, A. veronii AFs 2, A. veronii bv. veronii AFi). All of the six Aeromonas strains were resistant to β-actam (amoxicillin/ lavulanic acid) antibiotics. However, the resistance to other antibiotics was variable. All Aeromonas strains were found to be resistant to ampicillin, cephalexin, cephradine, amoxicillin/clavulanic acid, rifampin and cephalothin. Sensitivity of 6 Aeromonas strains raised against 7 concentrations of chitosan nanoparticles. Using well diffusion method spherically shaped silver nanoparticles AgNPs with an average size of ~ 20 nm, showed a great antimicrobial activity against A. veronii AFs 2 and five more strains of Aeromonas spp. At the concentration of 20, 24, 32 and 40 µg/ml. Thermal inactivation point was 84 oC for phage AvF07 which was sensitive to storage at 4 oC compared with the storage at - o 20 C. -
The Occurrence of Aeromonas in Drinking Water, Tap Water and the Porsuk River
Brazilian Journal of Microbiology (2011) 42: 126-131 ISSN 1517-8382 THE OCCURRENCE OF AEROMONAS IN DRINKING WATER, TAP WATER AND THE PORSUK RIVER Merih Kivanc1, Meral Yilmaz1*, Filiz Demir1 Anadolu University, Faculty of Science, Department of Biology, Eskiehir, Turkey. Submitted: April 01, 2010; Returned to authors for corrections: May 11, 2010; Approved: June 21, 2010. ABSTRACT The occurrence of Aeromonas spp. in the Porsuk River, public drinking water and tap water in the City of Eskisehir (Turkey) was monitored. Fresh water samples were collected from several sampling sites during a period of one year. Total 102 typical colonies of Aeromonas spp. were submitted to biochemical tests for species differentiation and of 60 isolates were confirmed by biochemical tests. Further identifications of isolates were carried out first with the VITEK system (BioMe˜rieux) and then selected isolates from different phenotypes (VITEK types) were identified using the DuPont Qualicon RiboPrinter® system. Aeromonas spp. was detected only in the samples from the Porsuk River. According to the results obtained with the VITEK system, our isolates were 13% Aeromonas hydrophila, 37% Aeromonas caviae, 35% Pseudomonas putida, and 15% Pseudomonas acidovorans. In addition Pseudomonas sp., Pseudomonas maltophila, Aeromonas salmonicida, Aeromonas hydrophila, and Aeromonas media species were determined using the RiboPrinter® system. The samples taken from the Porsuk River were found to contain very diverse Aeromonas populations that can pose a risk for the residents of the city. On the other hand, drinking water and tap water of the City are free from Aeromonas pathogens and seem to be reliable water sources for the community. -
A Review of Fish Vaccine Development Strategies: Conventional Methods and Modern Biotechnological Approaches
microorganisms Review A Review of Fish Vaccine Development Strategies: Conventional Methods and Modern Biotechnological Approaches Jie Ma 1,2 , Timothy J. Bruce 1,2 , Evan M. Jones 1,2 and Kenneth D. Cain 1,2,* 1 Department of Fish and Wildlife Sciences, College of Natural Resources, University of Idaho, Moscow, ID 83844, USA; [email protected] (J.M.); [email protected] (T.J.B.); [email protected] (E.M.J.) 2 Aquaculture Research Institute, University of Idaho, Moscow, ID 83844, USA * Correspondence: [email protected] Received: 25 October 2019; Accepted: 14 November 2019; Published: 16 November 2019 Abstract: Fish immunization has been carried out for over 50 years and is generally accepted as an effective method for preventing a wide range of bacterial and viral diseases. Vaccination efforts contribute to environmental, social, and economic sustainability in global aquaculture. Most licensed fish vaccines have traditionally been inactivated microorganisms that were formulated with adjuvants and delivered through immersion or injection routes. Live vaccines are more efficacious, as they mimic natural pathogen infection and generate a strong antibody response, thus having a greater potential to be administered via oral or immersion routes. Modern vaccine technology has targeted specific pathogen components, and vaccines developed using such approaches may include subunit, or recombinant, DNA/RNA particle vaccines. These advanced technologies have been developed globally and appear to induce greater levels of immunity than traditional fish vaccines. Advanced technologies have shown great promise for the future of aquaculture vaccines and will provide health benefits and enhanced economic potential for producers. This review describes the use of conventional aquaculture vaccines and provides an overview of current molecular approaches and strategies that are promising for new aquaculture vaccine development.