Pseudocollinia Brintoni Gen. Nov., Sp. Nov.(Apostomatida: Colliniidae), A
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Special Issue Featuring: a Case Study on Black Gill in Georgia Shrimp
Volume 29 • Number 4 • Winter 2015 Special Issue Featuring: A Case Study on Black Gill in Georgia Shrimp Volume 29 • Number 4 • Winter 2015 The Mystery of Black Gill: Shrimpers in the South Atlantic Face Off with a Cryptic Parasite BY JILL M. GAMBILL, ALLISON E. DOYLE, RICHARD F. LEE, PH.D., PATRICK J. GEER, ANNA N. WALKER, PH.D., LINDSEY G. PARKER, PH.D., AND MARC E. FRISCHER, PH.D. ABSTRACT In the Southeast United States, an unidentified parasite is infecting shrimp and presenting new challenges for an already struggling industry. Emerging research in Georgia is investigating the resulting condition, known as Black Gill, to better understand this newest threat to the state’s most valuable commercial fishery. Researchers, shrimpers, extension agents, and fishery managers are working collaboratively to gather baseline data on where, when, and how frequently Black Gill is occurring, as well as partnering to determine its epidemiology, dispersal, and possible intervention strategies. Savannah, Ga. – In 2013, after years of intense competition from lower priced imports and financial pressures stemming Figure 1. A Georgia white shrimp displays symptoms of the from the rising cost of fuel and insurance, Georgia shrimpers Black Gill condition around its gills. Courtesy of Rachael were poised for a comeback as they looked forward to a Randall and Chelsea Parrish, 2015 profitable year. Shrimp prices had tripled, as a consequence of a bacterial disease infecting the supply of farmed shrimp A LANDMARK YEAR from Asia (Loc et al. 2013). Commercial food shrimp landings in 2013 were the lowest Georgia shrimpers took to the water with high expectations, in recent history. -
Diversity and Life-Cycle Analysis of Pacific Ocean Zooplankton by Video Microscopy and DNA Barcoding: Crustacea
Journal of Aquaculture & Marine Biology Research Article Open Access Diversity and life-cycle analysis of Pacific Ocean zooplankton by video microscopy and DNA barcoding: Crustacea Abstract Volume 10 Issue 3 - 2021 Determining the DNA sequencing of a small element in the mitochondrial DNA (DNA Peter Bryant,1 Timothy Arehart2 barcoding) makes it possible to easily identify individuals of different larval stages of 1Department of Developmental and Cell Biology, University of marine crustaceans without the need for laboratory rearing. It can also be used to construct California, USA taxonomic trees, although it is not yet clear to what extent this barcode-based taxonomy 2Crystal Cove Conservancy, Newport Coast, CA, USA reflects more traditional morphological or molecular taxonomy. Collections of zooplankton were made using conventional plankton nets in Newport Bay and the Pacific Ocean near Correspondence: Peter Bryant, Department of Newport Beach, California (Lat. 33.628342, Long. -117.927933) between May 2013 and Developmental and Cell Biology, University of California, USA, January 2020, and individual crustacean specimens were documented by video microscopy. Email Adult crustaceans were collected from solid substrates in the same areas. Specimens were preserved in ethanol and sent to the Canadian Centre for DNA Barcoding at the Received: June 03, 2021 | Published: July 26, 2021 University of Guelph, Ontario, Canada for sequencing of the COI DNA barcode. From 1042 specimens, 544 COI sequences were obtained falling into 199 Barcode Identification Numbers (BINs), of which 76 correspond to recognized species. For 15 species of decapods (Loxorhynchus grandis, Pelia tumida, Pugettia dalli, Metacarcinus anthonyi, Metacarcinus gracilis, Pachygrapsus crassipes, Pleuroncodes planipes, Lophopanopeus sp., Pinnixa franciscana, Pinnixa tubicola, Pagurus longicarpus, Petrolisthes cabrilloi, Portunus xantusii, Hemigrapsus oregonensis, Heptacarpus brevirostris), DNA barcoding allowed the matching of different life-cycle stages (zoea, megalops, adult). -
Penaeid Shrimp in Chesapeake Bay: Population Growth and Black Gill Disease Syndrome
W&M ScholarWorks VIMS Articles Virginia Institute of Marine Science 2021 Penaeid Shrimp in Chesapeake Bay: Population Growth and Black Gill Disease Syndrome Troy D. Tuckey Virginia Institute of Marine Science Jillian L. Swinford Mary C. Fabrizio Virginia Institute of Marine Science Hamish J. Small Virginia Institute of Marine Science Jeffrey D. Shields Virginia Institute of Marine Science Follow this and additional works at: https://scholarworks.wm.edu/vimsarticles Part of the Aquaculture and Fisheries Commons, and the Marine Biology Commons Recommended Citation Tuckey, Troy D.; Swinford, Jillian L.; Fabrizio, Mary C.; Small, Hamish J.; and Shields, Jeffrey D., Penaeid Shrimp in Chesapeake Bay: Population Growth and Black Gill Disease Syndrome (2021). Marine and Coastal Fisheries, 13, 159-173. DOI: 10.1002/mcf2.10143 This Article is brought to you for free and open access by the Virginia Institute of Marine Science at W&M ScholarWorks. It has been accepted for inclusion in VIMS Articles by an authorized administrator of W&M ScholarWorks. For more information, please contact [email protected]. Marine and Coastal Fisheries 13:159–173, 2021 © 2021 The Authors. Marine and Coastal Fisheries published by Wiley Periodicals LLC on behalf of American Fisheries Society ISSN: 1942-5120 online DOI: 10.1002/mcf2.10143 ARTICLE Penaeid Shrimp in Chesapeake Bay: Population Growth and Black Gill Disease Syndrome Troy D. Tuckey* Virginia Institute of Marine Science, William & Mary, 1370 Greate Road, Gloucester Point, Virginia 23062, USA Jillian L. Swinford Texas Parks and Wildlife, Coastal Fisheries Division, Perry R. Bass Marine Fisheries Research Center, 3864 Farm to Market Road 3280, Palacios, Texas 77465, USA Mary C. -
Prevalent Ciliate Symbiosis on Copepods: High Genetic Diversity and Wide Distribution Detected Using Small Subunit Ribosomal RNA Gene
Prevalent Ciliate Symbiosis on Copepods: High Genetic Diversity and Wide Distribution Detected Using Small Subunit Ribosomal RNA Gene Zhiling Guo1,2, Sheng Liu1, Simin Hu1, Tao Li1, Yousong Huang4, Guangxing Liu4, Huan Zhang2,4*, Senjie Lin2,3* 1 Key Laboratory of Marine Bio-resources Sustainable Utilization, South China Sea Institute of Oceanology, Chinese Academy of Science, Guangzhou, Guangdong, China, 2 Department of Marine Sciences, University of Connecticut, Groton, Connecticut, United States of America, 3 Marine Biodiversity and Global Change Laboratory, Xiamen University, Xiamen, Fujian, China, 4 Department of Environmental Science, Ocean University of China, Qingdao, Shandong, China Abstract Toward understanding the genetic diversity and distribution of copepod-associated symbiotic ciliates and the evolutionary relationships with their hosts in the marine environment, we developed a small subunit ribosomal RNA gene (18S rDNA)- based molecular method and investigated the genetic diversity and genotype distribution of the symbiotic ciliates on copepods. Of the 10 copepod species representing six families collected from six locations of Pacific and Atlantic Oceans, 9 were found to harbor ciliate symbionts. Phylogenetic analysis of the 391 ciliate 18S rDNA sequences obtained revealed seven groups (ribogroups), six (containing 99% of all the sequences) belonging to subclass Apostomatida, the other clustered with peritrich ciliate Vorticella gracilis. Among the Apostomatida groups, Group III were essentially identical to Vampyrophrya pelagica, and the other five groups represented the undocumented ciliates that were close to Vampyrophrya/ Gymnodinioides/Hyalophysa. Group VI ciliates were found in all copepod species but one (Calanus sinicus), and were most abundant among all ciliate sequences obtained, indicating that they are the dominant symbiotic ciliates universally associated with copepods. -
Foraging Strategy Plasticity in Fiordland Penguins (Eudyptes Pachyrhynchus): a Stable Isotope Approach
Marshall University Marshall Digital Scholar Theses, Dissertations and Capstones 2020 FORAGING STRATEGY PLASTICITY IN FIORDLAND PENGUINS (EUDYPTES PACHYRHYNCHUS): A STABLE ISOTOPE APPROACH Jeffrey Wayne White [email protected] Follow this and additional works at: https://mds.marshall.edu/etd Part of the Animal Sciences Commons, Behavior and Ethology Commons, and the Terrestrial and Aquatic Ecology Commons Recommended Citation White, Jeffrey Wayne, "FORAGING STRATEGY PLASTICITY IN FIORDLAND PENGUINS (EUDYPTES PACHYRHYNCHUS): A STABLE ISOTOPE APPROACH" (2020). Theses, Dissertations and Capstones. 1284. https://mds.marshall.edu/etd/1284 This Thesis is brought to you for free and open access by Marshall Digital Scholar. It has been accepted for inclusion in Theses, Dissertations and Capstones by an authorized administrator of Marshall Digital Scholar. For more information, please contact [email protected], [email protected]. FORAGING STRATEGY PLASTICITY IN FIORDLAND PENGUINS (EUDYPTES PACHYRHYNCHUS): A STABLE ISOTOPE APPROACH A thesis submitted to the Graduate College of Marshall University In partial fulfillment of the requirements for the degree of Master of Science In Biology by Jeffrey Wayne White Approved by Dr. Herman Mays, Committee Chairperson Dr. Anne Axel Dr. Jennifer Mosher Dr. John Hopkins III Marshall University May 2020 APPROVAL OF THESIS We, the faculty supervising the work of Jeffrey Wayne White, affirm that the thesis, Foraging strategy plasticity in Fiordland Penguins (Eudyptes pachyrhynchus): A stable isotope approach, meets the high academic standards for original scholarship and creative work established by the Biology Department and the College of Arts and Sciences. This work also conforms to the editorial standards of our discipline and the Graduate College of Marshall University. -
Handbook of Shrimp Diseases
LOAN COPY ONLY TAMU-H-95-001 C3 Handbook of Shrimp Diseases Aquaculture S.K. Johnson Department of Wildlife and Fisheries Sciences Texas A&M University 90-601 (rev) Introduction 2 Shrimp Species 2 Shrimp Anatomy 2 Obvious Manifestations ofShrimp Disease 3 Damaged Shells , 3 Inflammation and Melanization 3 Emaciation and Nutritional Deficiency 4 Muscle Necrosis 5 Tumors and Other Tissue Problems 5 Surface Fouling 6 Cramped Shrimp 6 Unusual Behavior 6 Developmental Problems 6 Growth Problems 7 Color Anomalies 7 Microbes 8 Viruses 8 Baceteria and Rickettsia 10 Fungus 12 Protozoa 12 Haplospora 13 Gregarina 15 Body Invaders 16 Surface Infestations 16 Worms 18 Trematodes 18 Cestodes 18 Nematodes 18 Environment 20 Publication of this handbook is a coop erative effort of the Texas A&M Univer sity Sea Grant College Program, the Texas A&M Department of Wildlife and $2.00 Fisheries Sciences and the Texas Additional copies available from: Agricultural Extension Service. Produc Sea Grant College Program tion is supported in part by Institutional 1716 Briarcrest Suite 603 Grant No. NA16RG0457-01 to Texas Bryan, Texas 77802 A&M University by the National Sea TAMU-SG-90-601(r) Grant Program, National Oceanic and 2M August 1995 Atmospheric Administration, U.S. De NA89AA-D-SG139 partment of Commerce. A/1-1 Handbook ofShrimp Diseases S.K. Johnson Extension Fish Disease Specialist This handbook is designed as an information source and tail end (abdomen). The parts listed below are apparent upon field guide for shrimp culturists, commercial fishermen, and outside examination (Fig. 1). others interested in diseases or abnormal conditions of shrimp. -
Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes
University of Rhode Island DigitalCommons@URI Biological Sciences Faculty Publications Biological Sciences 9-26-2018 Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes Christopher E. Lane Et Al Follow this and additional works at: https://digitalcommons.uri.edu/bio_facpubs Journal of Eukaryotic Microbiology ISSN 1066-5234 ORIGINAL ARTICLE Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes Sina M. Adla,* , David Bassb,c , Christopher E. Laned, Julius Lukese,f , Conrad L. Schochg, Alexey Smirnovh, Sabine Agathai, Cedric Berneyj , Matthew W. Brownk,l, Fabien Burkim,PacoCardenas n , Ivan Cepi cka o, Lyudmila Chistyakovap, Javier del Campoq, Micah Dunthornr,s , Bente Edvardsent , Yana Eglitu, Laure Guillouv, Vladimır Hamplw, Aaron A. Heissx, Mona Hoppenrathy, Timothy Y. Jamesz, Anna Karn- kowskaaa, Sergey Karpovh,ab, Eunsoo Kimx, Martin Koliskoe, Alexander Kudryavtsevh,ab, Daniel J.G. Lahrac, Enrique Laraad,ae , Line Le Gallaf , Denis H. Lynnag,ah , David G. Mannai,aj, Ramon Massanaq, Edward A.D. Mitchellad,ak , Christine Morrowal, Jong Soo Parkam , Jan W. Pawlowskian, Martha J. Powellao, Daniel J. Richterap, Sonja Rueckertaq, Lora Shadwickar, Satoshi Shimanoas, Frederick W. Spiegelar, Guifre Torruellaat , Noha Youssefau, Vasily Zlatogurskyh,av & Qianqian Zhangaw a Department of Soil Sciences, College of Agriculture and Bioresources, University of Saskatchewan, Saskatoon, S7N 5A8, SK, Canada b Department of Life Sciences, The Natural History Museum, Cromwell Road, London, SW7 5BD, United Kingdom -
Antarctica) During an Extensive Phaeocystis Antarctica Bloom
bioRxiv preprint doi: https://doi.org/10.1101/271635; this version posted February 26, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Microzooplankton distribution in the Amundsen Sea Polynya (Antarctica) during an extensive Phaeocystis antarctica bloom Rasmus Swalethorp*1,2,3, Julie Dinasquet*1,4,5, Ramiro Logares6, Stefan Bertilsson7, Sanne Kjellerup2,3, Anders K. Krabberød8, Per-Olav Moksnes3, Torkel G. Nielsen2, and Lasse Riemann4 1 Scripps Institution of Oceanography, University of California San Diego, USA 2 National Institute of Aquatic Resources (DTU Aqua), Technical University of Denmark, Denmark 3 Department of Marine Sciences, University of Gothenburg, Sweden 4 Marine Biological Section, Department of Biology, University of Copenhagen, Denmark 5 Department of Natural Sciences, Linnaeus University, Sweden 6 Institute of Marine Sciences (ICM), CSIC, Spain 7 Department of Ecology and Genetics: Limnology and Science for Life Laboratory, Uppsala University, Sweden 8 Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), University of Oslo, Norway *Equal contribution, correspondence: [email protected], [email protected] Key words: ciliate; dinoflagellate; growth rates; Southern Ocean; Antarctica; Amundsen Sea polynya; Gymnodinium spp. 1 bioRxiv preprint doi: https://doi.org/10.1101/271635; this version posted February 26, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. -
Phylogenetic Position of the Apostome Ciliates (Phylum Ciliophora, Subclass Apostomatia) Tested Using Small Subunit Rrna Gene Sequences*
©Biologiezentrum Linz/Austria, download unter www.biologiezentrum.at Phylogenetic position of the apostome ciliates (Phylum Ciliophora, Subclass Apostomatia) tested using small subunit rRNA gene sequences* J o h n C . C L AM P , P h y l l i s C . B RADB UR Y , M i c h a e l a C . S TR ÜDER -K Y P KE & D e n i s H . L Y N N Abstract: The apostomes have been assigned historically to two major groups of ciliates – now called the Class Phyllopharyngea and Class Oligohymenophorea. We set about to test these competing hypotheses of relationship using sequences of the small sub- unit rRNA gene from isolates of five species of apostomes: Gymnodinioides pitelkae from Maine; Gymnodinioides sp. from North Ca- rolina; Hyalophysa chattoni from Florida and from North Carolina; H. lwoffi from North Carolina; and Vampyrophrya pelagica from North Carolina. These apostome ciliates were unambiguously related to taxa in the Class Oligohymenophorea using Bayesian in- ference, maximum parsimony, and neighbor-joining algorithms to infer phylogenetic relationship. Thus, their assignment as the Subclass Apostomatia within this class is confirmed by these genetic data. The two isolates of Hyalophysa chattoni were harvested from the same crustacean host, Palaemonetes pugio, at localities separated by slightly more than 1225 km, and yet they showed only 0.06% genetic divergence, suggesting that they represent a single population. Key words: Apostomes, crustacean, exuviotroph, Gammarus mucronatus, Marinogammarus obtusatus, Oligohymenophorea. Introduction In morphologically-based classifications, apostome ciliates have been placed with either one or the other Over the past 20 years, sequences of the small sub- of two major taxa, now considered classes (BRADBURY unit rRNA (SSrRNA) gene have been used to confirm 1989). -
Connecting the Nodes: Migratory Whale Conservation and the Challenge of Accommodating Uncertainty Ph.D
UNIVERSITY COLLEGE LONDON Connecting the Nodes: Migratory Whale Conservation and the Challenge of Accommodating Uncertainty Ph.D. Thesis Christina Geijer April 2013 I, Christina Geijer, confirm that the work presented in this thesis is my own. Where information has been derived from other sources, I confirm that this has been indicated in the thesis. 1 Abstract As endangered, flagship species, baleen whales are at the centre of cetacean conservation efforts. Whilst successful conservation requires protection throughout a species’ range, current measures invariably focus on the whales’ more static feeding or breeding habitats. The aim of this thesis is to analyse the challenges and prospects of protecting threatened whales during their seasonal migrations. I sought to assess the appropriateness of Marine Protected Area network initiatives and sector-specific mitigations strategies for migratory whale conservation within the context of scientific uncertainty, the threat of ship-whale collisions, and regional geopolitics. To this end, I compared and contrasted data obtained from two case studies—fin whales Balaenoptera physalus in the Mediterranean Sea, and North Atlantic right whales Eubalaena glacialis off the U.S. East coast—using a transdisciplinary, qualitative research approach based on semi-structured interviews and a theoretical framework of uncertainty analysis. The results indicate that protection of migrating whales is better pursued through a narrow sectoral route with wide geographical scope, exemplified by the International Maritime Organisation, rather than governmental cross-sectoral Marine Protected Area networks, particularly in regions with high geopolitical complexity and low political will. Principle challenges to migratory whale conservation were discerned on two levels. On a species level, high ontological uncertainty—endemic dynamism and unpredictability—surrounding whale migratory behaviour render conventional, habitat-based conservation measures unsuitable, and require more creative, dynamic, and adaptive strategies. -
Fusiforma Themisticola N. Gen., N. Sp., a New Genus and Species Of
Protist, Vol. 164, 793–810, November 2013 http://www.elsevier.de/protis Published online date 23 October 2013 ORIGINAL PAPER Fusiforma themisticola n. gen., n. sp., a New Genus and Species of Apostome Ciliate Infecting the Hyperiid Amphipod Themisto libellula in the Canadian Beaufort Sea (Arctic Ocean), and Establishment of the Pseudocolliniidae (Ciliophora, Apostomatia) a,1 b,c d Chitchai Chantangsi , Denis H. Lynn , Sonja Rueckert , e a f Anna J. Prokopowicz , Somsak Panha , and Brian S. Leander a Department of Biology, Faculty of Science, Chulalongkorn University, Phayathai Road, Pathumwan, Bangkok 10330, Thailand b Department of Zoology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada c Department of Integrative Biology, University of Guelph, Guelph, ON N1G 2W1, Canada d School of Life, Sport and Social Sciences, Edinburgh Napier University, Sighthill Campus, Sighthill Court, Edinburgh EH11 4BN, Scotland, United Kingdom e Québec-Océan, Département de Biologie, Université Laval, Quebec, QC G1V 0A6, Canada f Canadian Institute for Advanced Research, Departments of Zoology and Botany, University of British Columbia, Vancouver, BC V6T 1Z4, Canada Submitted May 30, 2013; Accepted September 16, 2013 Monitoring Editor: Genoveva F. Esteban A novel parasitic ciliate Fusiforma themisticola n. gen., n. sp. was discovered infecting 4.4% of the hyperiid amphipod Themisto libellula. Ciliates were isolated from a formaldehyde-fixed whole amphi- pod and the DNA was extracted for amplification of the small subunit (SSU) rRNA gene. Sequence and phylogenetic analyses showed unambiguously that this ciliate is an apostome and about 2% diver- gent from the krill-infesting apostome species assigned to the genus Pseudocollinia. Protargol silver impregnation showed a highly unusual infraciliature for an apostome. -
Microzooplankton Distribution in the Amundsen Sea Polynya (Antarctica) During an Extensive Phaeocystis Antarctica Bloom
Microzooplankton distribution in the Amundsen Sea Polynya (Antarctica) during an extensive Phaeocystis antarctica bloom Rasmus Swalethorp *1,2,3 , Julie Dinasquet *1,4,5 , Ramiro Logares 6, Stefan Bertilsson 7, Sanne Kjellerup 2,3 , Anders K. Krabberød 8, Per-Olav Moksnes 3, Torkel G. Nielsen 2, and Lasse Riemann 4 1 Scripps Institution of Oceanography, University of California San Diego, USA 2 National Institute of Aquatic Resources (DTU Aqua), Technical University of Denmark, Denmark 3 Department of Marine Sciences, University of Gothenburg, Sweden 4 Marine Biological Section, Department of Biology, University of Copenhagen, Denmark 5 Department of Natural Sciences, Linnaeus University, Sweden 6 Institute of Marine Sciences (ICM), CSIC, Spain 7 Department of Ecology and Genetics: Limnology and Science for Life Laboratory, Uppsala University, Sweden 8 Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), University of Oslo, Norway *Equal contribution, correspondence: [email protected], [email protected] Key words: ciliate; dinoflagellate; growth rates; Southern Ocean; Antarctica; Amundsen Sea polynya; Gymnodinium spp. 1 Abbreviations: ASP: Amundsen Sea Polynya; SO: Southern Ocean; HNF: Heterotrophic nanoflagellates; OTU: Operational Taxonomic Unit, DFM: Deep Fluorescence Maximum 2 Abstract In Antarctica, summer is a time of extreme environmental shifts resulting in large coastal phytoplankton blooms fueling the food web. Despite the importance of the microbial loop in remineralizing biomass from primary production, studies of how microzooplankton communities respond to such blooms in the Southern Ocean are rather scarce. Microzooplankton (ciliate and dinoflagellate) communities were investigated combining microscopy and 18S rRNA sequencing analyses in the Amundsen Sea Polynya during an extensive summer bloom of Phaeocystis antarctica .