CSIRO/Qld NRM&W Cane Toad Workshop
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Polyploidy and Sex Chromosome Evolution in Amphibians
Chapter 18 Polyploidization and Sex Chromosome Evolution in Amphibians Ben J. Evans, R. Alexander Pyron and John J. Wiens Abstract Genome duplication, including polyploid speciation and spontaneous polyploidy in diploid species, occurs more frequently in amphibians than mammals. One possible explanation is that some amphibians, unlike almost all mammals, have young sex chromosomes that carry a similar suite of genes (apart from the genetic trigger for sex determination). These species potentially can experience genome duplication without disrupting dosage stoichiometry between interacting proteins encoded by genes on the sex chromosomes and autosomalPROOF chromosomes. To explore this possibility, we performed a permutation aimed at testing whether amphibian species that experienced polyploid speciation or spontaneous polyploidy have younger sex chromosomes than other amphibians. While the most conservative permutation was not significant, the frog genera Xenopus and Leiopelma provide anecdotal support for a negative correlation between the age of sex chromosomes and a species’ propensity to undergo genome duplication. This study also points to more frequent turnover of sex chromosomes than previously proposed, and suggests a lack of statistical support for male versus female heterogamy in the most recent common ancestors of frogs, salamanders, and amphibians in general. Future advances in genomics undoubtedly will further illuminate the relationship between amphibian sex chromosome degeneration and genome duplication. B. J. Evans (CORRECTED&) Department of Biology, McMaster University, Life Sciences Building Room 328, 1280 Main Street West, Hamilton, ON L8S 4K1, Canada e-mail: [email protected] R. Alexander Pyron Department of Biological Sciences, The George Washington University, 2023 G St. NW, Washington, DC 20052, USA J. -
Tracing the Evolutionary History of Two Endemic Ground Frogs of Temperate Forest of Southern Chile, Through Molecular and Cytogenetic Approaches
TRACING THE EVOLUTIONARY HISTORY OF TWO ENDEMIC GROUND FROGS OF TEMPERATE FOREST OF SOUTHERN CHILE, THROUGH MOLECULAR AND CYTOGENETIC APPROACHES TESIS DE MAGISTER CAMILA ANDREA QUERCIA RATY VALDIVIA – CHILE TRACING THE EVOLUTIONARY HISTORY OF TWO ENDEMIC GROUND FROGS OF TEMPERATE FOREST OF SOUTHERN CHILE, TROUGHT MOLECULAR AND CYTOGENETIC APPROACHES Tesis presentada a la Facultad de Ciencias de la Universidad Austral de Chile en cumplimiento parcial de los requisitos para optar al grado de Magíster en Ciencias mención Genética por CAMILA A. QUERCIA RATY Valdivia Chile 2019 Universidad Austral de Chile Facultad de Ciencias INFORME DE APROBACIÓN TESIS DE MAGISTER La Comisión Evaluadora de Tesis comunica a la Directora de la Escuela de Graduados de la Facultad de Ciencias que la Tesis de Magíster presentada por la Candidata CAMILA ANDREA QUERCIA RATY ha sido aprobada en el exámen de defensa de Tesis rendido el día ___de _____ de 20__ como requisito para optar al grado de Magíster en Ciencias menCión Genética y, para que así conste para todos los efectos firman: Profesor Patrocinante Dr. José J. Nuñez Instituto de Ciencias Marinas y Limnológicas __________________________ Profesor Copatrocinante Dr. Elkin Y. Suárez-Villota Instituto de Ciencias Marinas y Limnológicas __________________________ Comisión Evaluadora Dra. Leyla Cárdenas Instituto de Ciencias Ambientales y Evolutivas __________________________ Dr. Guillermo D´Elía Instituto de CienCias Ambientales y Evolutivas __________________________ DEDICATORIA A mis padres y todos quienes se Convirtieron en mi familia De aquellos glaciares y hojarascas de quienes tu no podrás saber. AGRADECIMIENTOS Siento especial gratitud hacia quienes fueron mis mayores guías en este proceso, Dr. José Nuñez y Dr. -
Anfibios De Chile, Un Desafío Para La Conservación Anfibios De Chile, Un Desafío Para La Conservación
Anfibios de Chile, un desafío para la conservación Anfibios de Chile, un desafío para la conservación. Gabriel Lobos, Marcela Vidal, Claudio Correa, Antonieta Labra, Helen Díaz-Páez, Andrés Charrier, Felipe Rabanal, Sandra Díaz & Charif Tala Datos del libro Edición noviembre 2013 ISBN 978-956-7204-46-5 Tiraje 2000 ejemplares Diseño y diagramación Francisca Villalón O, Ministerio del Medio Ambiente Cita sugerida LOBOS G, VIDAL M, CORREA C, LABRA A, DÍAZ - PÁEZ H, CHARRIER A, RABANAL F, DÍAZ S & TALA C (2013) Anfibios de Chile, un desafío para la conservación. Ministerio del Medio Ambiente, Fundación Facultad de Ciencias Veterinarias y Pecuarias de la Universidad de Chile y Red Chilena de Herpetología. Santiago. 104 p. Permitida la reproducción de los textos y esquemas para fines no comerciales, citando la fuente de origen. Prohibida la reproducción de las fotos sin permiso de su autor. Impresión Gráfhika Impresores Foto de la portada Sapo de Bullock (Telmatobufo bullocki), foto de Andrés Charrier Anfibios de Chile, un desafío para la conservación Gabriel Lobos, Marcela Vidal, Claudio Correa, Antonieta Labra, Helen Díaz-Páez, Andrés Charrier, Felipe Rabanal, Sandra Díaz & Charif Tala Ministerio del Medio Ambiente Fundación Facultad de Ciencias Veterinarias y Pecuarias de la Universidad de Chile Red Chilena de Herpetología I. II. Los anfibios, Estado de patrimonio natural y conservación de cultural de nuestro los anfibios país 8 28 III. Prólogo 7 Las causas de la declinación de los 40 anfibios Índice 88 VI. IV. Reseña de algunas 60 Conocimiento de los especies 72 anfibios en Chile: un aporte para su V. conservación Actuando para la conservación de los anfibios onocer a los anfibios implica introducirse convierte en responsables de su conservación a Prólogo en un mundo sorprendente, no sólo por su nivel mundial. -
Distribution Patterns of Flora and Fauna in Southern Chilean Coastal Rain
Biodivers Conserv (2007) 16:2627–2648 DOI 10.1007/s10531-006-9073-2 ORIGINAL PAPER Distribution patterns of flora and fauna in southern Chilean Coastal rain forests: Integrating Natural History and GIS Cecilia Smith-Ramı´rez Æ Iva´n Dı´az Æ Patricio Pliscoff Æ Claudio Valdovinos Æ Marco A. Me´ndez Æ Juan Larraı´n Æ Horacio Samaniego Received: 17 August 2005 / Accepted: 19 May 2006 / Published online: 27 October 2006 Ó Springer Science+Business Media B.V. 2006 Abstract Knowledge of species richness centers is necessary for the design of conservation areas. In this study, we present a GIS analysis of two years of field data on animal and plant diversity distributions in evergreen, coastal rain forests of southern Chile (39°30¢–41°25¢ S). Despite their high endemism, these forests have remained largely unprotected. Field records were complemented with data from museum collections and scientific literature. We used selected environmental vari- ables (evapotranspiration, altitude) and, in some cases, forest types as predictors of species distributions. Our study focused on the distribution of forest bryophytes, vascular plants, soil invertebrates, amphibians and birds. We generated distribu- tional maps for each taxa based on their field records in the study area, comple- C. Smith-Ramı´rez (&) Center for Advanced Studies in Ecology and Biodiversity (CASEB), P. Universidad Cato´ lica and Fundacio´ n Senda Darwin (FSD), 1220, Valdivia, Chile e-mail: [email protected] I. Dı´az Department of Wildlife Ecology and Conservation, University of Florida and FSD, Gainesville, FL, USA P. Pliscoff FSD, Roman Dı´az 390, dpto. 902, Providencia, Santiago, Chile C. -
The Tadpole of Alsodes Cf. Norae (Anura: Alsodidae) with Comments on the Diagnosis of the Genus Alsodes
SALAMANDRA 53(1) 131–136 15 February 2017CorrespondenceISSN 0036–3375 Correspondence The tadpole of Alsodes cf. norae (Anura: Alsodidae) with comments on the diagnosis of the genus Alsodes J. Ramon Formas & César C. Cuevas Instituto de Ciencias Marinas y Limnológicas, Universidad Austral de Chile, Box 567 Valdivia, Chile. Corresponding author: J. Ramon Formas , e-mail: [email protected] Manuscript received: 19 December 2014 Accepted: 12 May 2015 by Arne Schulze The Cordillera de Mahuidanche (about 55 km long and ies (A. norae is the only known species of the genus to have 20 km wide, maximum altitude 715 m a.s.l.) is a small seg- 30 chromosomes, Cuevas 2008) and sequences of DNA ment of the Chilean Coastal Range situated between the fragments. Specific identification via DNA barcoding was mouths of the rivers Queule (39°01’ S, 73°06’ W, Cautín impossible, because the tadpoles were fixed in formalin province) and Valdivia (39°52’ S, 73°23’ W, Valdivia prov- (10%) right after capture and PCR was unsuccessful after ince), southern Chile (Fig. 1). In the recent past, the larg- six months in fixing solution. The presence of A. cf. norae est portion of this mountain range used to be covered tadpoles in this restricted area, the inability to capture lar- by temperate Nothofagus forests (Drymis winteri, Laure vae again (we explored the streams in the closer vicinity of lia phyllipiana, Weinmannia trichosperma, Dendroligo Llenehue bimonthly during 2013 and 2014), and the extent trichum dendro ides, and Cladonia spp.). However, today, of human intervention exerted on the stream and its sur- their western slopes exhibit a high degree of human inter- roundings are arguments adequate to justify the descrip- vention (Pinus and Eucalyptus plantations, cattle pastures, tion of this tadpole. -
Herpetological Journal FULL PAPER
Volume 26 (January 2016), 21–31 FULL PAPER Herpetological Journal Published by the British Description of the tadpole of Alsodes neuquensis Cei, 1976 Herpetological Society and comparison with the sibling species A. gargola Gallardo, 1970 (Amphibia, Anura, Alsodidae) Diego A. Barrasso1, Leandro Alcalde2, Boris L. Blotto3,4 & Néstor G. Basso1 1Instituto de Diversidad y Evolución Austral (IDEAus-CONICET), Blvd. Brown 2915, U9120ACD, Puerto Madryn, Chubut, Argentina 2Instituto de Limnología Dr. R. A. Ringuelet. 120 y 62 s/n (CP 1900), La Plata, Buenos Aires, Argentina 3Departamento de Zoologia, Instituto de Biociências, Universidade de São Paulo, São Paulo, SP 05508-090, Brazil 4División Herpetología, Museo Argentino de Ciencias Naturales “Bernardino Rivadavia”-CONICET, Angel Gallardo 470, C1405DJR, Buenos Aires, Argentina This paper describes the external and buccal cavity morphology, chondrocranium, hyobranchial apparatus and cranial muscles of Alsodes neuquensis in comparison with the sibling species A. gargola. The tadpole of A. neuquensis presents a shorter and higher tail, and a relatively smaller oral disc than A. gargola. The external larval morphology of Alsodes may be characterised as follows: (i) tooth row formula 2(2)/3(1), (ii) single row of marginal papillae with a wide rostral gap, (iii) single row of submarginal papillae in the mental region, (iv) both supra- and infraangular submarginal papillae present. The buccal features do not show marked intrageneric differences. The anterior and/or posterior pair of infralabial papillae may be simple or forked. All known tadpoles present one prenarial papilla accompanied or not by few pustules, and the lateral ridges of floor can be three to penta-armed. -
Bioclimatic and Anthropogenic Variables Shape the Occurrence of Batrachochytrium Dendrobatidis Over a Large Latitudinal Gradient
www.nature.com/scientificreports OPEN Bioclimatic and anthropogenic variables shape the occurrence of Batrachochytrium dendrobatidis over a large latitudinal gradient Mario Alvarado‑Rybak1,2,3, Manuel Lepe‑Lopez1, Alexandra Peñafel‑Ricaurte1,2, Andrés Valenzuela‑Sánchez1,4,5, Catalina Valdivia1, Fernando O. Mardones6, Leonardo D. Bacigalupe7, Robert Puschendorf8, Andrew A. Cunningham2 & Claudio Azat1* Amphibian chytridiomycosis, caused by the fungus Batrachochytrium dendrobatidis (Bd), has caused the greatest known loss of biodiversity due to an infectious disease. We used Bd infection data from quantitative real‑time PCR (qPCR) assays of amphibian skin swabs collected across Chile during 2008–2018 to model Bd occurrence with the aim to determine bioclimatic and anthropogenic variables associated with Bd infection. Also, we used Bd presence/absence records to identify geographical Bd high‑risk areas and compare Bd prevalence and infection loads between amphibian families, ecoregions, and host ecology. Data comprised 4155 Bd‑specifc qPCR assays from 162 locations across a latitudinal gradient of 3700 km (18º to 51ºS). Results showed a signifcant clustering of Bd associated with urban centres and anthropogenically highly disturbed ecosystems in central‑south Chile. Both Bd prevalence and Bd infection loads were higher in aquatic than terrestrial amphibian species. Our model indicated positive associations of Bd prevalence with altitude, temperature, precipitation and human‑modifed landscapes. Also, we found that macroscale drivers, such as land use change and climate, shape the occurrence of Bd at the landscape level. Our study provides with new evidence that can improve the efectiveness of strategies to mitigate biodiversity loss due to amphibian chytridiomycosis. In recent years, amphibians have declined dramatically in many regions of the world1 with approximely 50% of amphibian species under risk of global extinction 2,3. -
Phylogenetic Relationships of a Patagonian Frog Radiation, the Alsodes + Eupsophus Clade (Anura: Alsodidae), with Comments on the Supposed Paraphyly of Eupsophus
Cladistics Cladistics (2012) 1–19 10.1111/j.1096-0031.2012.00417.x Phylogenetic relationships of a Patagonian frog radiation, the Alsodes + Eupsophus clade (Anura: Alsodidae), with comments on the supposed paraphyly of Eupsophus Boris L. Blottoa, Jose´J. Nun˜ ezb,Ne´stor G. Bassoc, Carmen A. U´bedad, Ward C. Wheelere and Julia´n Faivovicha,f,* aDivisio´n Herpetologı´a, Museo Argentino de Ciencias Naturales ‘‘Bernardino Rivadavia’’-CONICET, A´ngel Gallardo 470, C1405DJR, Ciudad Auto´noma de Buenos Aires, Argentina; bInstituto de Zoologı´a, Universidad Austral de Chile, Casilla 567, Valdivia, Chile; cCentro Nacional Patago´nico (CENPAT), Blvd. Brown 2915, U-9120-ACF Puerto Madryn, Argentina; dCentro Regional Universitario Bariloche, Universidad Nacional del Comahue, Quintral 1250, R-8400-FRF San Carlos de Bariloche, Rı´o Negro, Argentina; eDivision of Invertebrate Zoology, American Museum of Natural History, Central Park West at 79th St, New York, NY 10024, USA; fDepartamento de Biodiversidad y Biologı´a Experimental—Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Argentina Accepted 23 May 2012 Abstract The frog clade composed of the alsodid genera Alsodes + Eupsophus is the most species-rich of the Patagonian endemic frog clades, including nearly 31 of the slightly more than 50 species of that region. The biology of this group of frogs is poorly known, its taxonomy quite complex (particularly Alsodes), and its diversity in chromosome number striking when compared with other frogs (collectively, there are species having 2n = 22, 2n = 26, 2n = 28, 2n =30or2n = 34). We present a phylogenetic analysis of this Patagonian frog clade based on mitochondrial and nuclear gene sequences. -
11-R.Ch.H.N. 78/4-Perotti
HUMEDALES DEL NORTE DE LA PATAGONIA ARGENTINARevista Chilena de Historia Natural723 78: 723-737, 2005 REVISIÓN Estado del conocimiento de humedales del norte patagónico (Argentina): aspectos relevantes e importancia para la conservación de la biodiversidad regional State of the knowledge of north Patagonian wetlands (Argentina): major aspects and importance for regional biodiversity conservation MARÍA G. PEROTTI*, MARÍA C. DIÉGUEZ & FABIÁN G. JARA Laboratorio de Fotobiología, Centro Regional Universitario Bariloche, Universidad Nacional del Comahue, Unidad Postal Universidad, 8400, San Carlos de Bariloche, Río Negro, Argentina; e-mail para correspondencia: [email protected] RESUMEN Las áreas de humedal ocupan casi el 5 % del territorio de la Patagonia argentina. En la zona extrandina y el desierto patagónico estos ecosistemas son esenciales para sostener numerosas especies de fauna y flora silvestre. Además, los humedales del norte patagónico permiten el desarrollo de comunidades acuáticas complejas y constituyen el hábitat crítico de grupos de organismos como los peces y los anfibios incluidos en listados de conservación prioritaria. Estos ecosistemas tienen un funcionamiento complejo que depende estrechamente de las fluctuaciones de las variables meteorológicas y son por lo tanto muy sensibles a los efectos del cambio climático. En la actualidad el uso de la tierra, la introducción de especies y la interacción de estos aspectos con el cambio climático constituyen las variables de mayor impacto sobre estos ambientes patagónicos. En este trabajo se presenta información geográfica, geomorfológica y climática de un número de humedales del norte de la Patagonia argentina. Por otra parte, se sintetiza información sobre la flora y la distribución de peces y anfibios con el propósito de enfatizar la importancia de estos ambientes en el mantenimiento de la biodiversidad regional. -
Alsodes Igneus Cuevas & Formas, 2005
FICHA DE ANTECEDENTES DE ESPECIE Id especie: Nombre Científico: Alsodes igneus Cuevas & Formas, 2005 Nombre Común: Rana de pecho espinoso de Tolhuaca Reino: Animalia Orden: Anura Phyllum/División: Chordata Familia: Alsodidae Clase: Amphibia Género: Alsodes Sinonimia: NO HAY Antecedentes Generales: ASPECTOS MORFOLÓGICOS: Alsodes igneus se distingue de sus congéneres por la siguiente combinación de caracteres: 1) hocico corto, ligeramente truncado en vista dorsal, 2) banda negra desde la punta del hocico hasta el margen anterior del ojo, 3) extremidades sin brazaletes, 4) talón que no alcanza el borde posterior del ojo cuando la pata se curva hacia delante, 5) dedos sin membrana interdigital, presentando sólo un reborde cutáneo entre los dedos de las extremidades posteriores, 6) piel dorsal y de las extremidades con granulaciones, y 7) desde el punto de vista cariológico presenta 26 cromosomas bibraquiados, lo que la incluye en el grupo monticola . Respecto al tamaño, alcanza los 67 mm de longitud hocico-cloaca (Cuevas & Formas 2005). La coloración dorsal es café amarillento con manchas irregulares café oscuro. Tiene una mancha interorbital café, de forma triangular que se extiende hasta el extremo posterior de la cabeza. La región ventral es de color grisáceo (Rabanal & Núñez 2008). Los especímenes descritos por Cuevas & Formas (2005) fueron capturados en Mayo del 2002, en el borde de un arroyo (1-2 m de ancho; 9-10°C) que desemboca en la laguna Malleco. Las larvas fueron encontradas en el agua, entre las piedras, estando más activas durante la noche. La presencia de asperezas nupciales rudimentarias en los dedos y en el pecho de A. -
Effects of Amphibian Phylogeny, Climate and Human Impact on the Occurrence of the Amphibian-Killing Chytrid Fungus
Global Change Biology (2017), doi: 10.1111/gcb.13610 Effects of amphibian phylogeny, climate and human impact on the occurrence of the amphibian-killing chytrid fungus 1 2 3 LEONARDO D. BACIGALUPE , CLAUDIO SOTO-AZAT , CRISTOBAL GARCIA - V E R A , 1 4 ISMAEL BARRIA-OYARZO andENRICO L. REZENDE 1Instituto de Ciencias Ambientales y Evolutivas, Facultad de Ciencias, Universidad Austral de Chile, Avda. Rector Eduardo Morales s/n, Edificio Pugın, Valdivia, Chile, 2Centro de Investigacion para la Sustentabilidad, Facultad de Ecologı´a y Recursos Naturales, Universidad Andres Bello, Republica 440, Santiago, Chile, 3Direccion General de Aguas, Ministerio de Obras Publicas, Riquelme 465, Coyhaique, Chile, 4Facultad de Ecologıa y Recursos Naturales, Universidad Andres Bello, Republica 440, Santiago, Chile Abstract Chytridiomycosis, due to the fungus Batrachochytrium dendrobatidis (Bd), has been associated with the alarming decline and extinction crisis of amphibians worldwide. Because conservation programs are implemented locally, it is essential to understand how the complex interactions among host species, climate and human activities contribute to Bd occur- rence at regional scales. Using weighted phylogenetic regressions and model selection, we investigated geographic patterns of Bd occurrence along a latitudinal gradient of 1500 km within a biodiversity hot spot in Chile (1845 individ- uals sampled from 253 sites and representing 24 species), and its association with climatic, socio-demographic and eco- nomic variables. Analyses show that Bd prevalence decreases with latitude although it has increased by almost 10% between 2008 and 2013, possibly reflecting an ongoing spread of Bd following the introduction of Xenopus laevis. Occur- rence of Bd was higher in regions with high gross domestic product (particularly near developed centers) and with a high variability in rainfall regimes, whereas models including other bioclimatic or geographic variables, including temperature, exhibited substantially lower fit and virtually no support based on Akaike weights. -
Science of Cane Toad Invasion and Control. Proceedings of the Invasive Animals CRC/ CSIRO/Qld NRM&W Cane Toad Workshop
Science of Cane Toad Invasion and Control. Proceedings of the Invasive Animals CRC/ CSIRO/Qld NRM&W Cane Toad Workshop 5-6 June 2006, Brisbane Edited by Kerryn Molloy & Wendy HendersonInvasive Animals Cooperative Research Centre Disclaimer: The views and opinions expressed in this report reflect those of the authors and do not necessarily reflect those of the Australian Government or the Invasive Animals Cooperative Research Centre. The material presented in this report is based on sources that are believed to be reliable. Whilst every care has been taken in the preparation of the report, the authors give no warranty that the said sources are correct and accept no responsibility for any resultant errors contained herein, any damages or loss, whatsoever, caused or suffered by any individual or corporation. Published by the Invasive Animals Cooperative Research Centre, University of Canberra, Canberra http://www.invasiveanimals.com http://www.feral.org.au © Invasive Animals Cooperative Research Centre This work is copyright. The Copyright Act 1968 permits fair dealing for study, research, information or educational purposes. Selected passages, tables or diagrams may be reproduced for such purposes, provided acknowledgement of the source is included. Major extracts of the entire document may not be reproduced by any process. Further copies may be requested from the Invasive Animals Cooperative Research Centre, University of Canberra, ACT 2601. Phone: +61 2 6201 2890 The publication should be cited as: Molloy, K.L. and Henderson, W.R. (Eds) (2006). Science of Cane Toad Invasion and Control. Proceedings of the Invasive Animals CRC/CSIRO/Qld NRM&W Cane Toad Workshop, June 2006, Brisbane.