available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 81: 55–83. Multigene phylogeny and taxonomic revision of yeasts and related fungi in the Ustilaginomycotina Q.-M. Wang1, D. Begerow2, M. Groenewald3, X.-Z. Liu1, B. Theelen3, F.-Y. Bai1,3*, and T. Boekhout1,3,4* 1State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China; 2Ruhr-Universit€at Bochum, AG Geobotanik, ND 03/174, Universit€atsstr. 150, 44801 Bochum, Germany; 3CBS-KNAW Fungal Biodiversity Centre, Yeast Division, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands; 4Shanghai Key Laboratory of Molecular Medical Mycology, Changzheng Hospital, Second Military Medical University, Shanghai, China *Correspondence: F.-Y. Bai,
[email protected]; T. Boekhout,
[email protected] Abstract: The subphylum Ustilaginomycotina (Basidiomycota, Fungi) comprises mainly plant pathogenic fungi (smuts). Some of the lineages possess cultivable uni- cellular stages that are usually classified as yeast or yeast-like species in a largely artificial taxonomic system which is independent from and largely incompatible with that of the smut fungi. Here we performed phylogenetic analyses based on seven genes including three nuclear ribosomal RNA genes and four protein coding genes to address the molecular phylogeny of the ustilaginomycetous yeast species and their filamentous counterparts. Taxonomic revisions were proposed to reflect this phylogeny and to implement the ‘One Fungus = One Name’ principle. The results confirmed that the yeast-containing classes Malasseziomycetes, Moniliellomycetes and Ustilaginomycetes are monophyletic, whereas Exobasidiomycetes in the current sense remains paraphyletic. Four new genera, namely Dirkmeia gen. nov., Kalma- nozyma gen. nov., Golubevia gen. nov. and Robbauera gen.