Circadian Rhythm-Related Genes: Implication in Autoimmunity And
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NPAS2 As a Transcriptional Regulator of Non-Rapid Eye Movement Sleep: Genotype and Sex Interactions
NPAS2 as a transcriptional regulator of non-rapid eye movement sleep: Genotype and sex interactions Paul Franken*†‡, Carol A. Dudley§, Sandi Jo Estill§, Monique Barakat*, Ryan Thomason¶, Bruce F. O’Hara¶, and Steven L. McKnight‡§ §Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX 75390; *Department of Biological Sciences, Stanford University, Stanford, CA 94305; ¶Department of Biology, University of Kentucky, Lexington, KY 40506; and †Center for Integrative Genomics, University of Lausanne, CH-1015 Lausanne-Dorigny, Switzerland Contributed by Steven L. McKnight, March 13, 2006 Because the transcription factor neuronal Per-Arnt-Sim-type sig- delta frequency range is a sensitive marker of time spent awake (4, nal-sensor protein-domain protein 2 (NPAS2) acts both as a sensor 7) and local cortical activation (8) and is therefore widely used as and an effector of intracellular energy balance, and because sleep an index of NREMS need and intensity. is thought to correct an energy imbalance incurred during waking, The PAS-domain proteins, CLOCK, BMAL1, PERIOD-1 we examined NPAS2’s role in sleep homeostasis using npas2 (PER1), and PER2, play crucial roles in circadian rhythm gener- knockout (npas2؊/؊) mice. We found that, under conditions of ation (9). The NPAS2 paralog CLOCK, like NPAS2, can induce the increased sleep need, i.e., at the end of the active period or after transcription of per1, per2, cryptochrome-1 (cry1), and cry2. PER and sleep deprivation (SD), NPAS2 allows for sleep to occur at times CRY proteins, in turn, inhibit CLOCK- and NPAS2-induced when mice are normally awake. Lack of npas2 affected electroen- transcription, thereby closing a negative-feedback loop that is cephalogram activity of thalamocortical origin; during non-rapid thought to underlie circadian rhythm generation. -
Melatonin Synthesis and Clock Gene Regulation in the Pineal Organ Of
General and Comparative Endocrinology 279 (2019) 27–34 Contents lists available at ScienceDirect General and Comparative Endocrinology journal homepage: www.elsevier.com/locate/ygcen Review article Melatonin synthesis and clock gene regulation in the pineal organ of teleost fish compared to mammals: Similarities and differences T ⁎ Saurav Saha, Kshetrimayum Manisana Singh, Braj Bansh Prasad Gupta Environmental Endocrinology Laboratory, Department of Zoology, North-Eastern Hill University, Shillong 793022, India ARTICLE INFO ABSTRACT Keywords: The pineal organ of all vertebrates synthesizes and secretes melatonin in a rhythmic manner due to the circadian Aanat gene rhythm in the activity of arylalkylamine N-acetyltransferase (AANAT) – the rate-limiting enzyme in melatonin Circadian rhythm synthesis pathway. Nighttime increase in AANAT activity and melatonin synthesis depends on increased ex- Clock genes pression of aanat gene (a clock-controlled gene) and/or post-translation modification of AANAT protein. In Melatonin synthesis mammalian and avian species, only one aanat gene is expressed. However, three aanat genes (aanat1a, aanat1b, Pineal organ and aanat2) are reported in fish species. While aanat1a and aanat1b genes are expressed in the fish retina, the Photoperiod fi Temperature nervous system and other peripheral tissues, aanat2 gene is expressed exclusively in the sh pineal organ. Clock genes form molecular components of the clockwork, which regulates clock-controlled genes like aanat gene. All core clock genes (i.e., clock, bmal1, per1, per2, per3, cry1 and cry2) and aanat2 gene (a clock-controlled gene) are expressed in the pineal organ of several fish species. There is a large body of information on regulation of clock genes, aanat gene and melatonin synthesis in the mammalian pineal gland. -
Neurobiological Functions of the Period Circadian Clock 2 Gene, Per2
Review Biomol Ther 26(4), 358-367 (2018) Neurobiological Functions of the Period Circadian Clock 2 Gene, Per2 Mikyung Kim, June Bryan de la Peña, Jae Hoon Cheong and Hee Jin Kim* Department of Pharmacy, Uimyung Research Institute for Neuroscience, Sahmyook University, Seoul 01795, Republic of Korea Abstract Most organisms have adapted to a circadian rhythm that follows a roughly 24-hour cycle, which is modulated by both internal (clock-related genes) and external (environment) factors. In such organisms, the central nervous system (CNS) is influenced by the circadian rhythm of individual cells. Furthermore, the period circadian clock 2 (Per2) gene is an important component of the circadian clock, which modulates the circadian rhythm. Per2 is mainly expressed in the suprachiasmatic nucleus (SCN) of the hypothalamus as well as other brain areas, including the midbrain and forebrain. This indicates that Per2 may affect various neurobiological activities such as sleeping, depression, and addiction. In this review, we focus on the neurobiological functions of Per2, which could help to better understand its roles in the CNS. Key Words: Circadian rhythm, Per2 gene, Sleep, Depression, Addiction, Neurotransmitter INTRODUCTION and lives in organisms because it can impart effects from the level of cells to organs including the brain. Thus, it is neces- A circadian rhythm is any physiological process that displays sary to understand clock-related genes that are controlling the a roughly 24 hour cycle in living beings, such as mammals, circadian rhythm endogenously. plants, fungi and cyanobacteria (Albrecht, 2012). In organ- The Period2 (Per2) gene is a member of the Period family isms, most biological functions such as sleeping and feeding of genes consisting of Per1, Per2, and Per3, and is mainly patterns are adapted to the circadian rhythm. -
Role of the Nuclear Receptor Rev-Erb Alpha in Circadian Food Anticipation and Metabolism Julien Delezie
Role of the nuclear receptor Rev-erb alpha in circadian food anticipation and metabolism Julien Delezie To cite this version: Julien Delezie. Role of the nuclear receptor Rev-erb alpha in circadian food anticipation and metabolism. Neurobiology. Université de Strasbourg, 2012. English. NNT : 2012STRAJ018. tel- 00801656 HAL Id: tel-00801656 https://tel.archives-ouvertes.fr/tel-00801656 Submitted on 10 Apr 2013 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. UNIVERSITÉ DE STRASBOURG ÉCOLE DOCTORALE DES SCIENCES DE LA VIE ET DE LA SANTE CNRS UPR 3212 · Institut des Neurosciences Cellulaires et Intégratives THÈSE présentée par : Julien DELEZIE soutenue le : 29 juin 2012 pour obtenir le grade de : Docteur de l’université de Strasbourg Discipline/ Spécialité : Neurosciences Rôle du récepteur nucléaire Rev-erbα dans les mécanismes d’anticipation des repas et le métabolisme THÈSE dirigée par : M CHALLET Etienne Directeur de recherche, université de Strasbourg RAPPORTEURS : M PFRIEGER Frank Directeur de recherche, université de Strasbourg M KALSBEEK Andries -
BMAL1 and Modulates Tissue-Specific Circadian Networks
Nuclear receptor HNF4A transrepresses CLOCK: BMAL1 and modulates tissue-specific circadian networks Meng Qua, Tomas Duffyb, Tsuyoshi Hirotac, and Steve A. Kaya,1 aKeck School of Medicine, University of Southern California, Los Angeles, CA 90089; bDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA 92037; and cInstitute of Transformative Bio-Molecules, Nagoya University, 464-8602 Nagoya, Japan Contributed by Steve A. Kay, November 6, 2018 (sent for review September 24, 2018; reviewed by Carla B. Green and John B. Hogenesch) Either expression level or transcriptional activity of various nuclear NRs canonically function as ligand-activated transcription receptors (NRs) have been demonstrated to be under circadian factors that regulate the expression of their target genes to control. With a few exceptions, little is known about the roles of affect physiological pathways (19). The importance of NRs in NRs as direct regulators of the circadian circuitry. Here we show maintaining optimal physiological homeostasis is illustrated in that the nuclear receptor HNF4A strongly transrepresses the their identification as potential targets for therapeutic drug transcriptional activity of the CLOCK:BMAL1 heterodimer. We development to combat a diverse array of diseases, including define a central role for HNF4A in maintaining cell-autonomous reproductive disorders, inflammation, cancer, diabetes, car- circadian oscillations in a tissue-specific manner in liver and colon diovascular disease, and obesity (20). Various NRs have been cells. Not only transcript level but also genome-wide chromosome implicated as targets of the circadian clock, which may con- binding of HNF4A is rhythmically regulated in the mouse liver. tribute to the circadian regulation of nutrient and energy me- ChIP-seq analyses revealed cooccupancy of HNF4A and CLOCK: tabolism. -
Titanium Biomaterials with Complex Surfaces Induced Aberrant Peripheral Circadian Rhythms in Bone Marrow Mesenchymal Stromal Cells
RESEARCH ARTICLE Titanium biomaterials with complex surfaces induced aberrant peripheral circadian rhythms in bone marrow mesenchymal stromal cells Nathaniel Hassan1,2, Kirstin McCarville1,2,3☯, Kenzo Morinaga1,3,4☯, Cristiane M. Mengatto1,5, Peter Langfelder6, Akishige Hokugo1,7, Yu Tahara8, Christopher S. Colwell8, Ichiro Nishimura1,2,3* a1111111111 a1111111111 1 Weintraub Center for Reconstructive Biotechnology, UCLA School of Dentistry, Los Angeles, California, a1111111111 United States of America, 2 Division of Oral Biology & Medicine, UCLA School of Dentistry, Los Angeles, a1111111111 California, United States of America, 3 Division of Advanced Prosthodontics, UCLA School of Dentistry, Los a1111111111 Angeles, California, United States of America, 4 Department of Oral Rehabilitation, Section of Oral Implantology, Fukuoka Dental College, Fukuoka, Japan, 5 Department of Conservative Dentistry, School of Dentistry Federal University of Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil, 6 Department of Human Genetics, David Geffen School of Medicine at UCLA, Los Angeles, California, United States of America, 7 Division of Plastic Surgery, David Geffen School of Medicine at UCLA, Los Angeles, California, United States of America, 8 Department of Psychiatry & Biobehavioral Science, David Geffen School of OPEN ACCESS Medicine at UCLA, Los Angeles, California, United States of America Citation: Hassan N, McCarville K, Morinaga K, ☯ These authors contributed equally to this work. Mengatto CM, Langfelder P, Hokugo A, et al. * [email protected] (2017) Titanium biomaterials with complex surfaces induced aberrant peripheral circadian rhythms in bone marrow mesenchymal stromal cells. PLoS ONE 12(8): e0183359. https://doi.org/ Abstract 10.1371/journal.pone.0183359 Circadian rhythms maintain a high level of homeostasis through internal feed-forward and Editor: Shin Yamazaki, University of Texas -backward regulation by core molecules. -
Molecular Oscillation of Per1 and Per2 Genes in the Rodent Brain: an in Situ Hybridization and Molecular Biological Study
Kobe J. Med. Sci., Vol. 51, No. 6, pp. 85-93, 2005 Molecular Oscillation of Per1 and Per2 Genes in the Rodent Brain: An In Situ Hybridization and Molecular Biological Study DAISUKE MATSUI, SEIICHI TAKEKIDA, and HITOSHI OKAMURA Division of Molecular Brain Science, Department of Brain Science/Neuroscience, Kobe University Graduate School of Medicine Received 20 December 2005 /Accepted 26 December 2005 Key Words: in situ hybridization, cerebral cortex, clock genes, circadian rhythms, E-box, rat The circadian rhythm is originally generated by a transcription-translation based oscillatory loop where Per1 and Per2 genes locate in its central. In the rat brain, rhythmic expressions of Per1 and Per2 were observed not only in neurons of the hypothalamic suprachiasmatic nucleus (SCN) but also in those of non-SCN regions including the cerebral cortex. The E-box enhancer elements possible to regulate transcription of Per1 and Per2 genes were highly conserved in rats and mice. When E-box-activating transcription factors, CLOCK and BMAL1, were coexpressed, each of both proteins showed two molecular forms. The presence of these higher molecular weight forms seems to be correlated with the E-box mediated transcription activation. This mechanism might not be involved in the PER2 mediated suppression of E-box, since adding PER2 did not change the content of the higher molecular forms of CLOCK and BMAL1. Circadian core oscillator is thought to be composed of an autoregulatory transcription- (post) translation-based feedback loop involving a set of clock genes (3, 4, 10, 16). In this loop, Per1 and Per2 genes are located in the center of this loop, and the transcriptional oscillation of these genes reflects rhythms at cells, tissues, and system levels (10, 16). -
The Mammalian Clock Component PERIOD2 Coordinates Circadian Output by Interaction with Nuclear Receptors
Downloaded from genesdev.cshlp.org on October 6, 2021 - Published by Cold Spring Harbor Laboratory Press The mammalian clock component PERIOD2 coordinates circadian output by interaction with nuclear receptors Isabelle Schmutz,1 Ju¨ rgen A. Ripperger,1 Ste´phanie Baeriswyl-Aebischer, and Urs Albrecht2 Department of Medicine, Unit of Biochemistry, University of Fribourg, 1700 Fribourg, Switzerland Mammalian circadian clocks provide a temporal framework to synchronize biological functions. To obtain robust rhythms with a periodicity of about a day, these clocks use molecular oscillators consisting of two interlocked feedback loops. The core loop generates rhythms by transcriptional repression via the Period (PER) and Cryptochrome (CRY) proteins, whereas the stabilizing loop establishes roughly antiphasic rhythms via nuclear receptors. Nuclear receptors also govern many pathways that affect metabolism and physiology. Here we show that the core loop component PER2 can coordinate circadian output with the circadian oscillator. PER2 interacts with nuclear receptors including PPARa and REV-ERBa and serves as a coregulator of nuclear receptor-mediated transcription. Consequently, PER2 is rhythmically bound at the promoters of nuclear receptor target genes in vivo. In this way, the circadian oscillator can modulate the expression of nuclear receptor target genes like Bmal1, Hnf1a, and Glucose-6-phosphatase. The concept that PER2 may propagate clock information to metabolic pathways via nuclear receptors adds an important facet to the clock-dependent regulation of biological networks. [Keywords: Circadian oscillator; transcription; protein–protein interaction] Supplemental material is available at http://www.genesdev.org. Received October 27, 2009; revised version accepted December 21, 2009. Many changes in physiology and behavior occur rhyth- et al. -
Effect of Type 2 Diabetes Mellitus on the Hypoxia-Inducible Factor 1
Journal of Clinical Medicine Article Effect of Type 2 Diabetes Mellitus on the Hypoxia-Inducible Factor 1-Alpha Expression. Is There a Relationship with the Clock Genes? Carolina López-Cano 1 , Liliana Gutiérrez-Carrasquilla 1, Ferran Barbé 2,3, Enric Sánchez 1 , Marta Hernández 1, Raquel Martí 1, Vicky Ceperuelo-Mallafre 4, Mireia Dalmases 2,3, Sonia Fernández-Veledo 4,5 , Joan Vendrell 4,5 , Cristina Hernández 5,6 , Rafael Simó 5,6,* and Albert Lecube 1,5,* 1 Endocrinology and Nutrition Department, University Hospital Arnau de Vilanova, Obesity, Diabetes and Metabolism (ODIM) Research Group, IRBLleida, University of Lleida, 25198 Lleida, Spain; [email protected] (C.L.-C.); [email protected] (L.G.-C.); [email protected] (E.S.); [email protected] (M.H.); [email protected] (R.M.) 2 Respiratory Department, University Hospital Arnau de Vilanova-Santa María, Translational Research in Respiratory Medicine, IRBLleida, Universityof Lleida, 25198 Lleida, Spain; [email protected] (F.B.); [email protected] (M.D.) 3 Centro de Investigación Biomédica en Red de Enfermedades Respiratorias (CIBERES), Instituto de Salud Carlos III (ISCIII), 28029 Madrid, Spain 4 Endocrinology and Nutrition Department, University Hospital de Tarragona Joan XXIII, Institut d’Investigació Sanitària Pere Virgili (IISPV), Rovira i Virgili University, 43001 Tarragona, Spain; [email protected] (V.C.-M.); [email protected] (S.F.-V.); [email protected] (J.V.) 5 Centro de Investigación Biomédica en Red de Diabetes -
A Circadian Rhythm in the Expression of PERIOD2 Protein Reveals a Novel SCN-Controlled Oscillator in the Oval Nucleus of the Bed Nucleus of the Stria Terminalis
The Journal of Neuroscience, January 28, 2004 • 24(4):781–790 • 781 Behavioral/Systems/Cognitive A Circadian Rhythm in the Expression of PERIOD2 Protein Reveals a Novel SCN-Controlled Oscillator in the Oval Nucleus of the Bed Nucleus of the Stria Terminalis Shimon Amir, Elaine Waddington Lamont, Barry Robinson, and Jane Stewart Center for Studies in Behavioral Neurobiology, Department of Psychology, Concordia University, Montre´al, Québec H4B 1R6, Canada Circadian rhythms in mammals are regulated not only globally by the master clock in the suprachiasmatic nucleus (SCN), but also locally by widely distributed populations of clock cells in the brain and periphery that control tissue-specific rhythmic outputs. Here we show that the oval nucleus of the bed nucleus of the stria terminalis (BNST-OV) exhibits a robust circadian rhythm in expression of the Period2 (PER2) clock protein. PER2 expression is rhythmic in the BNST-OV in rats housed under a light/dark cycle or in constant darkness, in blind rats, and in mice, and is in perfect synchrony with the PER2 rhythm of the SCN. Constant light or bilateral SCN lesions abolish the rhythmofPER2intheBNST-OV.LargeabruptshiftsinthelightscheduletransientlyuncoupletheBNST-OVrhythmfromthatoftheSCN. Re-entrainment of the PER2 rhythm is faster in the SCN than in the BNST-OV, and it is faster after a delay than an advance shift. Bilateral adrenalectomy blunts the PER2 rhythm in the BNST-OV. Thus, the BNST-OV contains circadian clock cells that normally oscillate in synchrony with the SCN, but these cells appear to require both input from the SCN and circulating glucocorticoids to maintain their circadian oscillation. -
Circadian Clock Gene Per2 Plays an Important Role in Cell Proliferation, Apoptosis and Cell Cycle Progression in Human Oral Squamous Cell Carcinoma
ONCOLOGY REPORTS 35: 3387-3394, 2016 Circadian clock gene Per2 plays an important role in cell proliferation, apoptosis and cell cycle progression in human oral squamous cell carcinoma QINGQING WANG1,3,4, YIRAN Ao2, KAI YANG2, HoNG TANG2 and DAN CHEN2 1Stomatological Hospital of Chongqing Medical University, Chongqing 400017; 2Department of oral and Maxillofacial Surgery, The First Affiliated Hospital of Chongqing Medical University, Chongqing 400016; 3Chongqing Key Laboratory of oral Diseases and Biomedical Sciences, Chongqing 400017; 4Chongqing Municipal Key Laboratory of oral Biomedical Engineering of Higher Education, Chongqing 400017, P.R. China Received December 22, 2015; Accepted February 4, 2016 DoI: 10.3892/or.2016.4724 Abstract. Previous studies have shown that the aberrant characteristics of life activities, plays an important role in expression of period circadian clock 2 (Per2) is closely maintaining complicated life activities in a highly coordinated related to the occurrence and development of cancers, but and orderly manner (3,4). The clock genes, whose rhythmic the specific mechanism remains unclear. In the present study, expression is responsible for circadian rhythms, exist in almost we used shRNA to downregulate Per2 in oral squamous cell all cells in the body (5,6). To date, at least 14 core clock genes carcinoma (OSCC) Tca8113 cells, and then detected the altera- have been described, including Per1, period circadian clock 2 tions in cell cycle, cell proliferation and apoptosis by flow (Per2), Per3, Cry1, Cry2, Tim, Ck1ε, Clock, Bmal1, Rors, cytometric analysis and mRNA expression alterations in all Rev-Erbs, Npas2, Dec1 and Dec2 (7,8). In mammals, circadian the important genes in the cyclin/cyclin-dependent protein rhythms play an important role in physiological activities, kinase (CDK)/cyclin-dependent kinase inhibitor (CKI) cell including cell proliferation, metabolism and hormone secre- cycle network by RT-qPCR. -
Up-Regulation of PER3 Expression Is Correlated with Better Clinical Outcome in Acute Leukemia
ANTICANCER RESEARCH 35: 6615-6622 (2015) Up-regulation of PER3 Expression Is Correlated with Better Clinical Outcome in Acute Leukemia MING-YU YANG1, PAI-MEI LIN2, HUI-HUA HSIAO3,4, JUI-FENG HSU5, HUGO YOU-HSIEN LIN5,6, CHENG-MING HSU1,7, I-YA CHEN1, SHENG-WEN SU1, YI-CHANG LIU3,4 and SHENG-FUNG LIN3,4 1Graduate Institute of Clinical Medical Sciences, College of Medicine, Chang Gung University, Tao-Yuan, Taiwan, R.O.C.; 2Department of Nursing, I-Shou University, Kaohsiung City, Taiwan, R.O.C.; 3Division of Hematology-Oncology, Department of Internal Medicine, Kaohsiung Medical University Hospital, Kaohsiung City, Taiwan, R.O.C.; 4Faculty of Medicine, Kaohsiung Medical University, Kaohsiung City, Taiwan, R.O.C.; 5Department of Internal Medicine, Kaohsiung Municipal Ta-Tung Hospital, Kaohsiung Medical University, Kaohsiung City, Taiwan, R.O.C.; 6Division of Nephrology, Department of Internal Medicine, Kaohsiung Medical University Hospital, Kaohsiung Medical University, Kaohsiung City, Taiwan, R.O.C.; 7Department of Otolaryngology, Kaoshiung Chang Gung Memorial Hospital, Kaohsiung, Taiwan, R.O.C. Abstract. Background: Altered expression of circadian treatment. Conclusion: Circadian clock genes are altered in clock genes has been linked to various types of cancer. This patients with acute leukemia and up-regulation of PER3 is study aimed to investigate whether these genes are also correlated with a better clinical outcome. altered in acute myeloid leukemia (AML) and acute lymphoid leukemia (ALL). Materials and Methods: The expression Acute leukemia comprises about 20,000 cancer diagnoses profiles of nine circadian clock genes of peripheral blood and 10,000 deaths in the United States each year (1).