Feeding Sea Cucumbers in Integrated Multitrophic Aquaculture
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Parameterisation and Application of Dynamic Energy Budget Model to Sea Cucumber Apostichopus Japonicus
Vol. 9: 1–8, 2017 AQUACULTURE ENVIRONMENT INTERACTIONS Published January 10 doi: 10.3354/aei00210 Aquacult Environ Interact OPENPEN ACCESSCCESS Parameterisation and application of dynamic energy budget model to sea cucumber Apostichopus japonicus Jeffrey S. Ren1, Jeanie Stenton-Dozey1, Jihong Zhang2,3,* 1National Institute of Water and Atmospheric Research, 10 Kyle Street, PO Box 8602, Christchurch 8440, New Zealand 2Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, 106 Nanjing Road, Qingdao 266071, PR China 3Function Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology, 1 Wenhai Road, Aoshanwei, Jimo, Qingdao 266200, PR China ABSTRACT: The sea cucumber Apostichopus japonicus is an important aquaculture species in China. As global interest in sustainable aquaculture grows, the species has increasingly been used for co-culture in integrated multitrophic aquaculture (IMTA). To provide a basis for opti - mising stocking density in IMTA systems, we parameterised and validated a standard dynamic energy budget (DEB) model for the sea cucumber. The covariation method was used to estimate parameters of the model with the DEBtool package. The method is based on minimisation of the weighted sum of squared deviation for datasets and model predictions in one single-step pro- cedure. Implementation of the package requires meaningful initial values of parameters, which were estimated using non-linear regression. Parameterisation of the model suggested that the accuracy of the lower (TL) and upper (TH) boundaries of tolerance temperatures are particularly important, as these would trigger the unique behaviour of the sea cucumber for hibernation and aestivation. After parameterisation, the model was validated with datasets from a shellfish aqua- culture environment in which sea cucumbers were co-cultured with the scallop Chlamys farreri and Pacific oyster Crassostrea gigas at various combinations of density. -
Genomic Insights of Body Plan Transitions from Bilateral to Pentameral Symmetry in Echinoderms
ARTICLE https://doi.org/10.1038/s42003-020-1091-1 OPEN Genomic insights of body plan transitions from bilateral to pentameral symmetry in Echinoderms Yongxin Li1, Akihito Omori 2, Rachel L. Flores3, Sheri Satterfield3, Christine Nguyen3, Tatsuya Ota 4, Toko Tsurugaya5, Tetsuro Ikuta6,7, Kazuho Ikeo4, Mani Kikuchi8, Jason C. K. Leong9, Adrian Reich 10, Meng Hao1, Wenting Wan1, Yang Dong 11, Yaondong Ren1, Si Zhang12, Tao Zeng 12, Masahiro Uesaka13, 1234567890():,; Yui Uchida9,14, Xueyan Li 1, Tomoko F. Shibata9, Takahiro Bino15, Kota Ogawa16, Shuji Shigenobu 15, Mariko Kondo 9, Fayou Wang12, Luonan Chen 12,17, Gary Wessel10, Hidetoshi Saiga7,9,18, ✉ ✉ R. Andrew Cameron 19, Brian Livingston3, Cynthia Bradham20, Wen Wang 1,21,22 & Naoki Irie 9,14,22 Echinoderms are an exceptional group of bilaterians that develop pentameral adult symmetry from a bilaterally symmetric larva. However, the genetic basis in evolution and development of this unique transformation remains to be clarified. Here we report newly sequenced genomes, developmental transcriptomes, and proteomes of diverse echinoderms including the green sea urchin (L. variegatus), a sea cucumber (A. japonicus), and with particular emphasis on a sister group of the earliest-diverged echinoderms, the feather star (A. japo- nica). We learned that the last common ancestor of echinoderms retained a well-organized Hox cluster reminiscent of the hemichordate, and had gene sets involved in endoskeleton development. Further, unlike in other animal groups, the most conserved developmental stages were not at the body plan establishing phase, and genes normally involved in bila- terality appear to function in pentameric axis development. These results enhance our understanding of the divergence of protostomes and deuterostomes almost 500 Mya. -
Genetic Diversity Analysis of Cultivated Kappaphycus in Indonesian Seaweed Farms Using COI Gene
Squalen Bull. of Mar. and Fish. Postharvest and Biotech. 15(2) 2020, 65-72 www.bbp4b.litbang.kkp.go.id/squalen-bulletin Squalen Bulletin of Marine and Fisheries Postharvest and Biotechnology ISSN: 2089-5690 e-ISSN: 2406-9272 Genetic Diversity Analysis of Cultivated Kappaphycus in Indonesian Seaweed Farms using COI Gene Pustika Ratnawati1*, Nova F. Simatupang1, Petrus R. Pong-Masak1, Nicholas A. Paul2, and Giuseppe C. Zuccarello3 1) Research Institute for Seaweed Culture, Ministry of Marine Affairs and Fisheries, Jl. Pelabuhan Etalase Perikanan, Boalemo, Gorontalo, Indonesia 96265 2)School of Science and Engineering, University of the Sunshine Coast, Sippy Downs, Maroochydore DC, Australia 4556 3)School of Biological Sciences, Victoria University of Wellington, Wellington, New Zealand 6140 Article history: Received: 20 May 2020; Revised: 20 July 2020; Accepted: 11 August 2020 Abstract Indonesia is a major player in the aquaculture of red algae, especially carrageenan producing ‘eucheumatoids’ such as Kappaphycus and Eucheuma. However, many current trade names do not reflect the evolutionary species and updated taxonomy, this is especially the case for eucheumatoid seaweeds that are highly variable in morphology and pigmentation. Genetic variation is also not known for the cultivated eucheumatoids in Indonesia. Therefore, this study aimed to determine the species and the level of genetic variation within species of cultivated eucheumatoids from various farms across Indonesia, spanning 150-1500 km, using the DNA barcoding method. Samples of seaweed were randomly collected at 14 farmed locations between April 2017 and May 2018. For this study the 5- prime end (~ 600 bp) of the mitochondrial-encoded cytochrome oxidase subunit one (COI) was amplified and sequenced. -
Invasive Alien Plants an Ecological Appraisal for the Indian Subcontinent
Invasive Alien Plants An Ecological Appraisal for the Indian Subcontinent EDITED BY I.R. BHATT, J.S. SINGH, S.P. SINGH, R.S. TRIPATHI AND R.K. KOHL! 019eas Invasive Alien Plants An Ecological Appraisal for the Indian Subcontinent FSC ...wesc.org MIX Paper from responsible sources `FSC C013604 CABI INVASIVE SPECIES SERIES Invasive species are plants, animals or microorganisms not native to an ecosystem, whose introduction has threatened biodiversity, food security, health or economic development. Many ecosystems are affected by invasive species and they pose one of the biggest threats to biodiversity worldwide. Globalization through increased trade, transport, travel and tour- ism will inevitably increase the intentional or accidental introduction of organisms to new environments, and it is widely predicted that climate change will further increase the threat posed by invasive species. To help control and mitigate the effects of invasive species, scien- tists need access to information that not only provides an overview of and background to the field, but also keeps them up to date with the latest research findings. This series addresses all topics relating to invasive species, including biosecurity surveil- lance, mapping and modelling, economics of invasive species and species interactions in plant invasions. Aimed at researchers, upper-level students and policy makers, titles in the series provide international coverage of topics related to invasive species, including both a synthesis of facts and discussions of future research perspectives and possible solutions. Titles Available 1.Invasive Alien Plants : An Ecological Appraisal for the Indian Subcontinent Edited by J.R. Bhatt, J.S. Singh, R.S. Tripathi, S.P. -
Kappaphycus Malesianus Sp. Nov.: a New Species of Kappaphycus (Gigartinales, Rhodophyta) from Southeast Asia
J Appl Phycol DOI 10.1007/s10811-013-0155-8 Kappaphycus malesianus sp. nov.: a new species of Kappaphycus (Gigartinales, Rhodophyta) from Southeast Asia Ji Tan & Phaik Eem Lim & Siew Moi Phang & Adibi Rahiman & Aluh Nikmatullah & H. Sunarpi & Anicia Q. Hurtado Received: 3 May 2013 /Revised and Accepted: 12 September 2013 # Springer Science+Business Media Dordrecht 2013 Abstract A new species, Kappaphycus malesianus,is Introduction established as a new member of the genus Kappaphycus. Locally known as the “Aring-aring” variety by farmers in AccordingtoDoty(1988), Kappaphycus consists of five spe- Malaysia and the Philippines, this variety has been commer- cies, currently named Kappaphycus alvarezii (Doty) Doty ex cially cultivated, often together with Kappaphycus alvarezii P. C. Silva, Kappaphycus cottonii (Weber-van Bosse) Doty ex due to the similarities in morphology. Despite also producing P. C. Silva, Kappaphycus inermis (F. Schmitz) Doty ex H. D. kappa-carrageenan, the lower biomass of the K. malesianus Nguyen & Q. N. Huynh, Kappaphycus procrusteanus (Kraft) when mixed with K. alvarezii ultimately affects the carra- Doty and Kappaphycus striatus (F.Schmitz)DotyexP.C.Silva, geenan yield. Morphological observations, on both wild and as well as one variety K. alvarezii var. tambalang (Doty). The cultivated plants, coupled with molecular data have shown K. latter variety was recorded as not being validly described (Guiry malesianus to be genetically distinct from its Kappaphycus and Guiry 2013). Among the recognized species, at least two, i.e. congeners. The present study describes the morphology and K. alvarezii and K. striatus, are currently commercially culti- anatomy of this new species as supported by DNA data, with vated worldwide for the kappa-carrageenan they produce. -
SPC Beche-De-Mer Information Bulletin #39 – March 2019
ISSN 1025-4943 Issue 39 – March 2019 BECHE-DE-MER information bulletin v Inside this issue Editorial Towards producing a standard grade identification guide for bêche-de-mer in This issue of the Beche-de-mer Information Bulletin is well supplied with Solomon Islands 15 articles that address various aspects of the biology, fisheries and S. Lee et al. p. 3 aquaculture of sea cucumbers from three major oceans. An assessment of commercial sea cu- cumber populations in French Polynesia Lee and colleagues propose a procedure for writing guidelines for just after the 2012 moratorium the standard identification of beche-de-mer in Solomon Islands. S. Andréfouët et al. p. 8 Andréfouët and colleagues assess commercial sea cucumber Size at sexual maturity of the flower populations in French Polynesia and discuss several recommendations teatfish Holothuria (Microthele) sp. in the specific to the different archipelagos and islands, in the view of new Seychelles management decisions. Cahuzac and others studied the reproductive S. Cahuzac et al. p. 19 biology of Holothuria species on the Mahé and Amirantes plateaux Contribution to the knowledge of holo- in the Seychelles during the 2018 northwest monsoon season. thurian biodiversity at Reunion Island: Two previously unrecorded dendrochi- Bourjon and Quod provide a new contribution to the knowledge of rotid sea cucumbers species (Echinoder- holothurian biodiversity on La Réunion, with observations on two mata: Holothuroidea). species that are previously undescribed. Eeckhaut and colleagues P. Bourjon and J.-P. Quod p. 27 show that skin ulcerations of sea cucumbers in Madagascar are one Skin ulcerations in Holothuria scabra can symptom of different diseases induced by various abiotic or biotic be induced by various types of food agents. -
Approaches in Rebuilding Sea Urchin and Sea Cucumber Populations in the Philippines Marie Antonette J
Approaches in Rebuilding Sea Urchin and Sea Cucumber Populations in the Philippines Marie Antonette J. Meñez Marine Science Institute, University of the Philippines Diliman, Quezon City, Philippines email: [email protected] Abstract Sea urchins and sea cucumbers are among the most valuable and overexploited fishery resources. Culture and release of juvenile Tripneustes gratilla and Holothuria scabra have been undertaken to rebuild depleted populations and provide a supplemental source of income for fishers. In both cases an integrated socio- ecological approach was used. Studies on factors affecting growth and survival of released juveniles were conducted alongside active participation of local partners in site management and regular monitoring. For T. gratilla, community-based grow-out in sea cages complemented with restocking of protected areas helped in the recovery of a collapsed fishery. Gonad biomass and quality of sea urchins fed with Sargassum were high. These increased the value of the gonads and reproductive output of cultured sea urchins. In the case of H. scabra, release of juveniles in a communal sea ranch resulted in the build-up in density and biomass. Observations of regular mass spawning in the sea ranch established that a viable spawning population was maintained through selective harvesting. Both the sea urchin cage grow-out culture and sea cucumber sea ranch function as reproductive reserves and source of larval supply to adjacent suitable habitats. In addition, wild recruits in the sea ranch and in the vicinity of the sea urchin sea cages indicate that natural recruitment may be enhanced by the high density of conspecific adults. These models have demonstrated that both ecological and economic benefits can be realized through of responsible culture-based management interventions. -
Apostichopus Japonicus
Acta Oceanol. Sin., 2018, Vol. 37, No. 5, P. 54–66 DOI: 10.1007/s13131-017-1101-4 http://www.hyxb.org.cn E-mail: [email protected] Differential gene expression in the body wall of the sea cucumber (Apostichopus japonicus) under strong lighting and dark conditions ZHANG Libin1, 2, FENG Qiming1, 3, SUN Lina1, 2, FANG Yan4, XU Dongxue5, ZHANG Tao1, 2, YANG Hongsheng1, 2* 1 CAS Key laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China 2 Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266071, China 3 University of Chinese Academy of Sciences, Beijing 100049, China 4 School of Agriculture, Ludong University, Yantai 264025, China 5 College of Marine Science and Engineering, Qingdao Agricultural University, Qingdao 266109, China Received 25 January 2017; accepted 9 March 2017 © Chinese Society for Oceanography and Springer-Verlag GmbH Germany, part of Springer Nature 2018 Abstract Sea cucumber, Apostichopus japonicus is very sensitive to light changes. It is important to study the influence of light on the molecular response of A. japonicus. In this study, RNA-seq provided a general overview of the gene expression profiles of the body walls of A. japonicus exposed to strong light (“light”), normal light (“control”) and fully dark (“dark”) environment. In the comparisons of “control” vs. “dark”, ”control” vs. “light” and “dark” vs. “light”, 1 161, 113 and 1 705 differentially expressed genes (DEGs) were identified following the criteria of |log2ratio|≥1 and FDR≤0.001, respectively. Gene ontology analysis showed that “cellular process” and “binding” enriched the most DEGs in the category of “biological process” and “molecular function”, while “cell” and “cell part” enriched the most DEGs in the category of “cellular component”. -
The Cultivation of Kappaphycus and Eucheuma in Tropical 4 and Sub-Tropical Waters
The Cultivation of Kappaphycus and Eucheuma in Tropical 4 and Sub-Tropical Waters Leila Hayashi, Renata P. Reis, Alex Alves dos Santos, Beatriz Castelar, Daniel Robledo, Gloria Batista de Vega, Flower E. Msuya, K. Eswaran, Suhaimi Md. Yasir, Majid Khan Majahar Ali, and Anicia Q. Hurtado Abstract Kappaphycus and Eucheuma species have been successfully cultivated in Southeast Asia since the early 1970s. The increasing global demand for carrageenan in processed foods and thereby the need for industrial-scales of biomass to be provided to feed an extraction indus- try, exceeded wild stock availability and productivity and commercial demands could only be achieved through extensive cultivation of selected carrageenophytes. This unprecedented situation led to the introduction of carrageenophyte species and cultivars around the world; combined production of Eucheuma and Kappaphycus is one of the largest for seaweed bio- mass in the world. The activity of, and economic benefits accrued from, seaweed farming are indeed respon- sible for significant changes in rural, coastal communities in a number of important coun- tries. Such activities generating new activity and income are often the only source of cash G.B. de Vega Director de Investigación y Desarrollo (I+D) de Gracilarias de L. Hayashi (*) Panamá S.A., and Facultad de Ciencias Naturales y Tecnología, Aquaculture Department, Universidade Federal de Santa Catarina Universidad de Panamá, Panamá (UFSC), Rodovia Admar Gonzaga, 1346, Itacorubi, 88034-001 Florianópolis, Santa Catarina, Brazil F.E. Msuya Institute of Marine Sciences, University of Dar es Salaam, Integrated Services for the Development of Aquaculture and Mizingani Road, P.O. Box 668, Zanzibar, Tanzania Fisheries (ISDA) Inc., McArthur Highway, Tabuc Suba, Jaro, Iloilo City 5000, Philippines K. -
Taxonomy of the Heavily Exploited Indo-Pacific Sandfish
Zoological Journal of the Linnean Society, 2009, 155, 40–59. With 10 figures Taxonomy of the heavily exploited Indo-Pacific sandfish complex (Echinodermata: Holothuriidae) CLAUDE MASSIN1*, SVEN UTHICKE2, STEVEN W. PURCELL3, FRANK W. E. ROWE, FLS4† and YVES SAMYN5 1Department of Invertebrates, Royal Belgian Institute of Natural Sciences, Vautierstraat 29, 1000 Brussels, Belgium 2Australian Institute of Marine Science, PMB No 3, Townsville, Qld 4810, Australia 3The WorldFish Center, c/o SPC – Secretariat of the Pacific Community, B.P. D5, 98848 Noumea Cedex, New Caledonia 4Research Associate, Australian Museum, Sydney, NSW, 2000, Australia 5Global Taxonomy Initiative, Royal Belgian Institute of Natural Sciences, Vautierstraat 29, 1000 Brussels, Belgium Received 5 September 2007; accepted for publication 18 October 2007 Two commercially valuable holothurians, the sandfish and golden sandfish, vary in colour and have a confused taxonomy, lending uncertainty to species identifications. A recent molecular study showed that the putative variety Holothuria (Metriatyla) scabra var. versicolor Conand, 1986 (‘golden sandfish’) is a distinct species from, but could hybridize with, H. (Metriatyla) scabra Jaeger, 1833 (’sandfish’). Examination of the skeletal elements and external morphology of these species corroborates these findings. The identity of H. (M.) scabra is unambiguously defined through the erection and description of a neotype, and several synonyms have been critically re-examined. The nomenclaturally rejected taxon H. (Metriatyla) timama Lesson, 1830 and H. (M.) scabra var. versicolor (a nomen nudum) are herein recognized as conspecific and are allocated to a new species, Holothuria lessoni sp. nov., for which type specimens are described. The holotype and only known specimen of H. aculeata Semper, 1867, has been found and is redescribed. -
A Review of Sea Cucumber Aquaculture, Ranching, and Stock Enhancement in China
Reviews in Fisheries Science & Aquaculture ISSN: 2330-8249 (Print) 2330-8257 (Online) Journal homepage: http://www.tandfonline.com/loi/brfs21 A Review of Sea Cucumber Aquaculture, Ranching, and Stock Enhancement in China Qingxi Han, John K. Keesing & Dongyan Liu To cite this article: Qingxi Han, John K. Keesing & Dongyan Liu (2016) A Review of Sea Cucumber Aquaculture, Ranching, and Stock Enhancement in China, Reviews in Fisheries Science & Aquaculture, 24:4, 326-341, DOI: 10.1080/23308249.2016.1193472 To link to this article: http://dx.doi.org/10.1080/23308249.2016.1193472 Published online: 21 Jun 2016. Submit your article to this journal Article views: 115 View related articles View Crossmark data Citing articles: 2 View citing articles Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=brfs21 Download by: [National Science Library] Date: 19 December 2016, At: 03:07 REVIEWS IN FISHERIES SCIENCE & AQUACULTURE 2016, VOL. 24, NO. 4, 326–341 http://dx.doi.org/10.1080/23308249.2016.1193472 A Review of Sea Cucumber Aquaculture, Ranching, and Stock Enhancement in China Qingxi Hana,b, John K. Keesingc, and Dongyan Liub aSchool of Marine Sciences, Ningbo University, Ningbo, Zhejiang Province, P. R. China; bYantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, Shandong, P. R. China; cCSIRO Oceans and Atmosphere Research, Wembley, Australia ABSTRACT KEYWORDS Sea cucumber aquaculture has flourished as a result of increasing demand coupled with declining Sea cucumber; Apostichopus wild fisheries and has been facilitated by technical progress in the production and grow-out phase japonicas; stock of larvae and small juvenile sea cucumbers. -
Identifying Sea Cucumbers
Identifying Sea Cucumbers: Implementing and enforcing an Appendix II listing of teatfish INTRODUCTION Sea cucumbers, or bêche-de-mer (the dried product), are a luxury good classified as one of the eight culinary treasures of the sea. On the international market, sea cucumbers can be sold at prices ranging from USD $145-389 per kg, an increase of 16.6% from 2011–2016. While demand for sea cucumbers remains high, stocks of some wild populations have dropped significantly. Parties to the Convention on International Trade in Endangered Species of Wild Flora and Fau- na (CITES) have proposed the white teatfish Holothuria( fuscogilva), and the two black teatfishes (Holothuria nobilis and Holothuria whitmaei) for listing in Appendix II at the 18th CITES Conference of Parties (CoP18). With population declines from 50-90%, not only are these species in need of international trade management to ensure continued trade is sustainably sourced, but they are also easily identifiable from other sea cucumber species - meaning CITES Parties can easily and effectively implement this potential listing. Sea cucumbers are bottom dwelling species, residing along coral reefs and in association with seagrasses almost globally. Moving slowly across the ocean floor, sea cucumbers consume, among other things, fine organic matter and sand. Doing so ensures that nutrients are cycled back into the ecosystem, as well as the mixing of oxygen into the substrate - essential functions that pro- vide the backbone of healthy marine ecosystems. Out of 1,200 known sea cucumber species, only approximately 70 species are found in the international trade. Of those found in trade, H.