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Functional Replacement of a Primary Metabolic Pathway Via Multiple Independent Eukaryote-To-Eukaryote Gene Transfers and Selective Retention
doi: 10.1111/j.1420-9101.2009.01797.x Functional replacement of a primary metabolic pathway via multiple independent eukaryote-to-eukaryote gene transfers and selective retention A. M. NEDELCU, A. J. C. BLAKNEY & K. D. LOGUE Biology Department, University of New Brunswick, Fredericton, NB, Canada Keywords: Abstract ammonium transporter; Although lateral gene transfer (LGT) is now recognized as a major force in the glutamate synthase; evolution of prokaryotes, the contribution of LGT to the evolution and glutamine synthetase; diversification of eukaryotes is less understood. Notably, transfers of complete lateral gene transfer; pathways are believed to be less likely between eukaryotes, because the Monosiga; successful transfer of a pathway requires the physical clustering of functionally primary metabolic pathway. related genes. Here, we report that in one of the closest unicellular relatives of animals, the choanoflagellate, Monosiga, three genes whose products work together in the glutamate synthase cycle are of algal origin. The concerted retention of these three independently acquired genes is best explained as the consequence of a series of adaptive replacement events. More generally, this study argues that (i) eukaryote-to-eukaryote transfers of entire metabolic pathways are possible, (ii) adaptive functional replacements of primary pathways can occur, and (iii) functional replacements involving eukaryotic genes are likely to have also contributed to the evolution of eukaryotes. Lastly, these data underscore the potential contribution of algal genes to the evolution of nonphotosynthetic lineages. Palmer, 2008). On the other hand, as functional replace- Introduction ments can be either adaptive or selectively neutral, their Lateral gene transfer (LGT) is currently recognized as a impact on the recipient’s adaptive or long-term evolu- major force in the evolution of prokaryotes (e.g. -
What Is Macroevolution?
[Palaeontology, 2020, pp. 1–11] FRONTIERS IN PALAEONTOLOGY WHAT IS MACROEVOLUTION? by MICHAEL HAUTMANN Pal€aontologisches Institut und Museum, Universit€at Zurich,€ Karl-Schmid Strasse 4, 8006 Zurich,€ Switzerland; [email protected] Typescript received 14 June 2019; accepted in revised form 15 October 2019 Abstract: Definitions of macroevolution fall into three cat- intraspecific competition as a mediator between selective egories: (1) evolution of taxa of supraspecific rank; (2) evolu- agents and evolutionary responses. This mediating role of tion on the grand time-scale; and (3) evolution that is guided intraspecific competition occurs in the presence of sexual by sorting of interspecific variation (as opposed to sorting of reproduction and has therefore no analogue at the macroevo- intraspecific variation in microevolution). Here, it is argued lutionary level where species are the evolutionary units. Com- that only definition 3 allows for a consistent separation of petition between species manifests both on the macroevolution and microevolution. Using this definition, spe- microevolutionary and macroevolutionary level, but with dif- ciation has both microevolutionary and macroevolutionary ferent effects. In microevolution, interspecific competition aspects: the process of morphological transformation is spurs evolutionary divergence, whereas it is a potential driver microevolutionary, but the variation among species that it pro- of extinction at the macroevolutionary level. Recasting the Red duces is macroevolutionary, as is the rate at which speciation Queen hypothesis in a macroevolutionary framework suggests occurs. Selective agents may have differential effects on that the effects of interspecific competition result in a positive intraspecific and interspecific variation, with three possible sit- correlation between origination and extinction rates, confirm- uations: effect at one level only, effect at both levels with the ing empirical observations herein referred to as Stanley’s rule. -
S41467-021-25308-W.Pdf
ARTICLE https://doi.org/10.1038/s41467-021-25308-w OPEN Phylogenomics of a new fungal phylum reveals multiple waves of reductive evolution across Holomycota ✉ ✉ Luis Javier Galindo 1 , Purificación López-García 1, Guifré Torruella1, Sergey Karpov2,3 & David Moreira 1 Compared to multicellular fungi and unicellular yeasts, unicellular fungi with free-living fla- gellated stages (zoospores) remain poorly known and their phylogenetic position is often 1234567890():,; unresolved. Recently, rRNA gene phylogenetic analyses of two atypical parasitic fungi with amoeboid zoospores and long kinetosomes, the sanchytrids Amoeboradix gromovi and San- chytrium tribonematis, showed that they formed a monophyletic group without close affinity with known fungal clades. Here, we sequence single-cell genomes for both species to assess their phylogenetic position and evolution. Phylogenomic analyses using different protein datasets and a comprehensive taxon sampling result in an almost fully-resolved fungal tree, with Chytridiomycota as sister to all other fungi, and sanchytrids forming a well-supported, fast-evolving clade sister to Blastocladiomycota. Comparative genomic analyses across fungi and their allies (Holomycota) reveal an atypically reduced metabolic repertoire for sanchy- trids. We infer three main independent flagellum losses from the distribution of over 60 flagellum-specific proteins across Holomycota. Based on sanchytrids’ phylogenetic position and unique traits, we propose the designation of a novel phylum, Sanchytriomycota. In addition, our results indicate that most of the hyphal morphogenesis gene repertoire of multicellular fungi had already evolved in early holomycotan lineages. 1 Ecologie Systématique Evolution, CNRS, Université Paris-Saclay, AgroParisTech, Orsay, France. 2 Zoological Institute, Russian Academy of Sciences, St. ✉ Petersburg, Russia. 3 St. -
Master Document Template
Copyright by Benjamin Joseph Liebeskind 2014 The Dissertation Committee for Benjamin Joseph Liebeskind Certifies that this is the approved version of the following dissertation: Ion Channels and the Tree of Life Committee: Harold Zakon, Supervisor David Hillis, Co-Supervisor Richard Aldrich Hans Hofmann Mikhail Matz Ion Channels and the Tree of Life by Benjamin Joseph Liebeskind, B.A. Dissertation Presented to the Faculty of the Graduate School of The University of Texas at Austin in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy The University of Texas at Austin December 2014 Dedication For my father, John. Acknowledgements I would first of all like to acknowledge my advisors Harold Zakon and David Hillis for their guidance, support, and, especially, for the excellent example they set as scientists, scholars, thinkers, and teachers. I also thank my committee members, Richard Aldrich, Hans Hofmann, and Mikhail Matz for their advice and support on this dissertation and on my personal development as a scientist. The members of the Zakon and Hillis labs from 2009 – 2014 have been a wonderful source of feedback and support over the years. I would especially like to acknowledge Thomas Keller, Emily-Jane McTavish, April Wright, Alfredo Ghezzi, Kristin Koenig and Ammon Thompson. This dissertation relied largely on computational skills that I did not possess when I began it. Several individuals put aside time to bring me up to speed, but I would most of all like to acknowledge James Derry, who devotes a huge portion of his own time to helping scientists learn about programming. Finally, I thank my family for their care and support. -
A Flagellate-To-Amoeboid Switch in the Closest Living Relatives of Animals
RESEARCH ARTICLE A flagellate-to-amoeboid switch in the closest living relatives of animals Thibaut Brunet1,2*, Marvin Albert3, William Roman4, Maxwell C Coyle1,2, Danielle C Spitzer2, Nicole King1,2* 1Howard Hughes Medical Institute, Chevy Chase, United States; 2Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States; 3Department of Molecular Life Sciences, University of Zu¨ rich, Zurich, Switzerland; 4Department of Experimental and Health Sciences, Pompeu Fabra University (UPF), CIBERNED, Barcelona, Spain Abstract Amoeboid cell types are fundamental to animal biology and broadly distributed across animal diversity, but their evolutionary origin is unclear. The closest living relatives of animals, the choanoflagellates, display a polarized cell architecture (with an apical flagellum encircled by microvilli) that resembles that of epithelial cells and suggests homology, but this architecture differs strikingly from the deformable phenotype of animal amoeboid cells, which instead evoke more distantly related eukaryotes, such as diverse amoebae. Here, we show that choanoflagellates subjected to confinement become amoeboid by retracting their flagella and activating myosin- based motility. This switch allows escape from confinement and is conserved across choanoflagellate diversity. The conservation of the amoeboid cell phenotype across animals and choanoflagellates, together with the conserved role of myosin, is consistent with homology of amoeboid motility in both lineages. We hypothesize that -
Lifestyle of the Octoradiate Eoandromeda in the Ediacaran
Lifestyle of the Octoradiate Eoandromeda in the Ediacaran Authors: Wang, Ye, Wang, Yue, Tang, Feng, Zhao, Mingsheng, and Liu, Pei Source: Paleontological Research, 24(1) : 1-13 Published By: The Palaeontological Society of Japan URL: https://doi.org/10.2517/2019PR001 BioOne Complete (complete.BioOne.org) is a full-text database of 200 subscribed and open-access titles in the biological, ecological, and environmental sciences published by nonprofit societies, associations, museums, institutions, and presses. Your use of this PDF, the BioOne Complete website, and all posted and associated content indicates your acceptance of BioOne’s Terms of Use, available at www.bioone.org/terms-of-use. Usage of BioOne Complete content is strictly limited to personal, educational, and non - commercial use. Commercial inquiries or rights and permissions requests should be directed to the individual publisher as copyright holder. BioOne sees sustainable scholarly publishing as an inherently collaborative enterprise connecting authors, nonprofit publishers, academic institutions, research libraries, and research funders in the common goal of maximizing access to critical research. Downloaded From: https://bioone.org/journals/Paleontological-Research on 15 Feb 2020 Terms of Use: https://bioone.org/terms-of-use Access provided by Bing Search Engine Paleontological Research, vol. 24, no. 1, pp. 1–13, JanuaryEoandromeda 1, 2020 ’s Lifestyle 1 © by the Palaeontological Society of Japan doi:10.2517/2019PR001 Lifestyle of the Octoradiate Eoandromeda in the Ediacaran YE WANG1, YUE WANG1, FENG TANG2, MINGSHENG ZHAO3 and PEI LIU1 1Resource and Environmental Engineering College, Guizhou University, Huanx 550025, Guiyang, Guizhou, China (e-mail: [email protected]) 2Institute of Geology, Chinese Academy of Geological Sciences, 26 Baiwanzhuang Street 100037, Beijing, China 3College of Paleontology, Shenyang Normal Univeristy, 253 Huanhe N Street 110034, Shengyang, Liaoning, China Received May 14, 2018; Revised manuscript accepted January 26, 2019 Abstract. -
The Cambrian Substrate Revolution and the Early Evolution of Attachment in MARK Suspension-Feeding Echinoderms
Earth-Science Reviews 171 (2017) 478–491 Contents lists available at ScienceDirect Earth-Science Reviews journal homepage: www.elsevier.com/locate/earscirev The Cambrian Substrate Revolution and the early evolution of attachment in MARK suspension-feeding echinoderms ⁎ Samuel Zamoraa,b, , Bradley Delinec, J. Javier Álvarod, Imran A. Rahmane a Instituto Geológico y Minero de España, C/Manuel Lasala, 44, 9B, Zaragoza 50006, Spain b Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington DC 20013-7012, USA c University of West Georgia, Carrollton, GA, USA d Instituto de Geociencias (CSIC-UCM), c/José Antonio Novais 12, 28040 Madrid, Spain e Oxford University Museum of Natural History, Parks Road, Oxford OX1 3PW, UK ARTICLE INFO ABSTRACT Keywords: The Cambrian, characterized by the global appearance of diverse biomineralized metazoans in the fossil record Palaeoecology for the first time, represents a pivotal point in the history of life. This period also documents a major change in Evolution the nature of the sea floor: Neoproterozoic-type substrates stabilized by microbial mats were replaced by un- fl Sea oor consolidated soft substrates with a well-developed mixed layer. The effect of this transition on the ecology and Attachment evolution of benthic metazoans is termed the Cambrian Substrate Revolution (CSR), and this is thought to have impacted greatly on early suspension-feeding echinoderms in particular. According to this paradigm, most echinoderms rested directly on non-bioturbated soft substrates as sediment attachers and stickers during the Cambrian Epoch 2. As the substrates became increasingly disturbed by burrowing, forming a progressively thickening mixed layer, echinoderms developed new strategies for attaching to firm and hard substrates. -
Plated Cambrian Bilaterians Reveal the Earliest Stages of Echinoderm Evolution
Zamora, S., Rahman, I. A., & Smith, A. B. (2012). Plated Cambrian bilaterians reveal the earliest stages of echinoderm evolution. PLoS ONE, 7(6), [e38296]. https://doi.org/10.1371/journal.pone.0038296 Publisher's PDF, also known as Version of record Link to published version (if available): 10.1371/journal.pone.0038296 Link to publication record in Explore Bristol Research PDF-document University of Bristol - Explore Bristol Research General rights This document is made available in accordance with publisher policies. Please cite only the published version using the reference above. Full terms of use are available: http://www.bristol.ac.uk/red/research-policy/pure/user-guides/ebr-terms/ Plated Cambrian Bilaterians Reveal the Earliest Stages of Echinoderm Evolution Samuel Zamora1, Imran A. Rahman2, Andrew B. Smith1* 1 Department of Palaeontology, The Natural History Museum, London, United Kingdom, 2 School of Geography, Earth & Environmental Sciences, University of Birmingham, Edgbaston, Birmingham, United Kingdom Abstract Echinoderms are unique in being pentaradiate, having diverged from the ancestral bilaterian body plan more radically than any other animal phylum. This transformation arises during ontogeny, as echinoderm larvae are initially bilateral, then pass through an asymmetric phase, before giving rise to the pentaradiate adult. Many fossil echinoderms are radial and a few are asymmetric, but until now none have been described that show the original bilaterian stage in echinoderm evolution. Here we report new fossils from the early middle Cambrian of southern Europe that are the first echinoderms with a fully bilaterian body plan as adults. Morphologically they are intermediate between two of the most basal classes, the Ctenocystoidea and Cincta. -
A Stem Group Echinoderm from the Basal Cambrian of China and the Origins of Ambulacraria
ARTICLE https://doi.org/10.1038/s41467-019-09059-3 OPEN A stem group echinoderm from the basal Cambrian of China and the origins of Ambulacraria Timothy P. Topper 1,2,3, Junfeng Guo4, Sébastien Clausen 5, Christian B. Skovsted2 & Zhifei Zhang1 Deuterostomes are a morphologically disparate clade, encompassing the chordates (including vertebrates), the hemichordates (the vermiform enteropneusts and the colonial tube-dwelling pterobranchs) and the echinoderms (including starfish). Although deuter- 1234567890():,; ostomes are considered monophyletic, the inter-relationships between the three clades remain highly contentious. Here we report, Yanjiahella biscarpa, a bilaterally symmetrical, solitary metazoan from the early Cambrian (Fortunian) of China with a characteristic echinoderm-like plated theca, a muscular stalk reminiscent of the hemichordates and a pair of feeding appendages. Our phylogenetic analysis indicates that Y. biscarpa is a stem- echinoderm and not only is this species the oldest and most basal echinoderm, but it also predates all known hemichordates, and is among the earliest deuterostomes. This taxon confirms that echinoderms acquired plating before pentaradial symmetry and that their history is rooted in bilateral forms. Yanjiahella biscarpa shares morphological similarities with both enteropneusts and echinoderms, indicating that the enteropneust body plan is ancestral within hemichordates. 1 Shaanxi Key Laboratory of Early Life and Environments, State Key Laboratory of Continental Dynamics and Department of Geology, Northwest University, 710069 Xi’an, China. 2 Department of Palaeobiology, Swedish Museum of Natural History, Box 50007104 05, Stockholm, Sweden. 3 Department of Earth Sciences, Durham University, Durham DH1 3LE, UK. 4 School of Earth Science and Resources, Key Laboratory for the study of Focused Magmatism and Giant Ore Deposits, MLR, Chang’an University, 710054 Xi’an, China. -
Evolution of the Horse M
Volume 2 | Issue 2 Article 10 1940 Evolution of the Horse M. R. Benson Iowa State College Follow this and additional works at: https://lib.dr.iastate.edu/iowastate_veterinarian Part of the Evolution Commons, and the Large or Food Animal and Equine Medicine Commons Recommended Citation Benson, M. R. (1940) "Evolution of the Horse," Iowa State University Veterinarian: Vol. 2 : Iss. 2 , Article 10. Available at: https://lib.dr.iastate.edu/iowastate_veterinarian/vol2/iss2/10 This Article is brought to you for free and open access by the Journals at Iowa State University Digital Repository. It has been accepted for inclusion in Iowa State University Veterinarian by an authorized editor of Iowa State University Digital Repository. For more information, please contact [email protected]. Evolution of the Horse M. R. BENSON Class of 1940 HE phylogeny of the horse family digits (c) on both fore and rear feet. The T is perhaps the most complete record animal was more adapted for speed. of organic evolution that modern science Many representatives of this group have has discovered. This article is an at been discovered, ranging from 18 inches tempt to show briefly the outstanding to 24 inches, or 6 hands in height. This steps in the development of the modern animal is usually considered as a tran horse. sitional type between the earlier forest Most investigators agree that the horse dwelling animal and the later plains tribe originated during the Eocene epoch. inhabiting creature. Luxuriant forests grew in the warm, The Miocene era was a time of great humid climate which characterized this topographical change during which our era in North America. -
( DOI: 10.1002/Gj.L015 Pi>8J7> ZSZO
Sp£r/g*cL(Tfiyt> Vktgu^ ZOOS Natural History Museum Of Los Angeles County GEOLOGICAL JOURNAL Invertebrate Paleontology Geol. J. 40: 281-293 (2005) Published online 13 May 2005 in Wiley InterScience (www.interscience.wiley.com). DOI: 10.1002/gj.l015 pi>8J7> ZSZO Deconstructing helicoplacoids: reinterpreting the most enigmatic Cambrian echinoderms JAMES SPRINKLE* and BRYAN C. WILBUR Department of Geological Sciences, Jackson School of Geosciences, University of Texas, 1 University Station C1100, Austin, TX 78712-0254, USA < Oz § r* c ^aped theca with numerous interambulacral pleats and a long triradiate ambulacrum. They occur in western Laurentia along g. g S with the earliest edrioasteroids and epispire-bearing eocrinoids(?), but unlike these other groups, helicoplacoids do not show iB > I pentameral symmetry around a centrally located, upward-facing mouth. It is uncertain where the major body openings were • eg 2. located in helicoplacoids, where new plates were added during thecal growth, and whether helicoplacoids were primitive, pre- fi» 5" ^ pentameral, stem-group echinoderms or derived, relatively specialized forms that had lost several ambulacra, o q 2 We made highly modified, side-layout, plating diagrams of different helicoplacoid species by cutting the theca apart half-way o3 ~c between the spiraling ambulacra, leaving four to six interambulacral pleats on each side. This deconstructed thecal strip resulted jg ^ £ in an elongate sigmoid-shaped plating diagram with a long central single or paired ambulacrum that is interpreted as three «< ambulacral branches (A down, C and D up) around a central mouth on the side of the theca. The unrolled plating diagram resembles an elongate French curve drawing template with nearly parallel sides, a large or small sigmoidal top (where the theca is rounded and the interambulacral pleats converge), and an open deviated bottom, where the interambulacral pleats turn down to a truncated conical base. -
Biological Sciences
A Comprehensive Book on Environmentalism Table of Contents Chapter 1 - Introduction to Environmentalism Chapter 2 - Environmental Movement Chapter 3 - Conservation Movement Chapter 4 - Green Politics Chapter 5 - Environmental Movement in the United States Chapter 6 - Environmental Movement in New Zealand & Australia Chapter 7 - Free-Market Environmentalism Chapter 8 - Evangelical Environmentalism Chapter 9 -WT Timeline of History of Environmentalism _____________________ WORLD TECHNOLOGIES _____________________ A Comprehensive Book on Enzymes Table of Contents Chapter 1 - Introduction to Enzyme Chapter 2 - Cofactors Chapter 3 - Enzyme Kinetics Chapter 4 - Enzyme Inhibitor Chapter 5 - Enzymes Assay and Substrate WT _____________________ WORLD TECHNOLOGIES _____________________ A Comprehensive Introduction to Bioenergy Table of Contents Chapter 1 - Bioenergy Chapter 2 - Biomass Chapter 3 - Bioconversion of Biomass to Mixed Alcohol Fuels Chapter 4 - Thermal Depolymerization Chapter 5 - Wood Fuel Chapter 6 - Biomass Heating System Chapter 7 - Vegetable Oil Fuel Chapter 8 - Methanol Fuel Chapter 9 - Cellulosic Ethanol Chapter 10 - Butanol Fuel Chapter 11 - Algae Fuel Chapter 12 - Waste-to-energy and Renewable Fuels Chapter 13 WT- Food vs. Fuel _____________________ WORLD TECHNOLOGIES _____________________ A Comprehensive Introduction to Botany Table of Contents Chapter 1 - Botany Chapter 2 - History of Botany Chapter 3 - Paleobotany Chapter 4 - Flora Chapter 5 - Adventitiousness and Ampelography Chapter 6 - Chimera (Plant) and Evergreen Chapter