Systematic Studies in the Genus Solanum in Africa
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A Phylogenetic Framework for Evolutionary Study of the Nightshades
Särkinen et al. BMC Evolutionary Biology 2013, 13:214 http://www.biomedcentral.com/1471-2148/13/214 RESEARCH ARTICLE Open Access A phylogenetic framework for evolutionary study of the nightshades (Solanaceae): a dated 1000-tip tree Tiina Särkinen1,2*, Lynn Bohs3, Richard G Olmstead4 and Sandra Knapp1 Abstract Background: The Solanaceae is a plant family of great economic importance. Despite a wealth of phylogenetic work on individual clades and a deep knowledge of particular cultivated species such as tomato and potato, a robust evolutionary framework with a dated molecular phylogeny for the family is still lacking. Here we investigate molecular divergence times for Solanaceae using a densely-sampled species-level phylogeny. We also review the fossil record of the family to derive robust calibration points, and estimate a chronogram using an uncorrelated relaxed molecular clock. Results: Our densely-sampled phylogeny shows strong support for all previously identified clades of Solanaceae and strongly supported relationships between the major clades, particularly within Solanum. The Tomato clade is shown to be sister to section Petota, and the Regmandra clade is the first branching member of the Potato clade. The minimum age estimates for major splits within the family provided here correspond well with results from previous studies, indicating splits between tomato & potato around 8 Million years ago (Ma) with a 95% highest posterior density (HPD) 7–10 Ma, Solanum & Capsicum c. 19 Ma (95% HPD 17–21), and Solanum & Nicotiana c. 24 Ma (95% HPD 23–26). Conclusions: Our large time-calibrated phylogeny provides a significant step towards completing a fully sampled species-level phylogeny for Solanaceae, and provides age estimates for the whole family. -
Insects of Western North America 4. Survey of Selected Insect Taxa of Fort Sill, Comanche County, Oklahoma 2
Insects of Western North America 4. Survey of Selected Insect Taxa of Fort Sill, Comanche County, Oklahoma 2. Dragonflies (Odonata), Stoneflies (Plecoptera) and selected Moths (Lepidoptera) Contributions of the C.P. Gillette Museum of Arthropod Diversity Colorado State University Survey of Selected Insect Taxa of Fort Sill, Comanche County, Oklahoma 2. Dragonflies (Odonata), Stoneflies (Plecoptera) and selected Moths (Lepidoptera) by Boris C. Kondratieff, Paul A. Opler, Matthew C. Garhart, and Jason P. Schmidt C.P. Gillette Museum of Arthropod Diversity Department of Bioagricultural Sciences and Pest Management Colorado State University, Fort Collins, Colorado 80523 March 15, 2004 Contributions of the C.P. Gillette Museum of Arthropod Diversity Colorado State University Cover illustration (top to bottom): Widow Skimmer (Libellula luctuosa) [photo ©Robert Behrstock], Stonefly (Perlesta species) [photo © David H. Funk, White- lined Sphinx (Hyles lineata) [photo © Matthew C. Garhart] ISBN 1084-8819 This publication and others in the series may be ordered from the C.P. Gillette Museum of Arthropod Diversity, Department of Bioagricultural Sciences, Colorado State University, Fort Collins, Colorado 80523 Copyrighted 2004 Table of Contents EXECUTIVE SUMMARY……………………………………………………………………………….…1 INTRODUCTION…………………………………………..…………………………………………….…3 OBJECTIVE………………………………………………………………………………………….………5 Site Descriptions………………………………………….. METHODS AND MATERIALS…………………………………………………………………………….5 RESULTS AND DISCUSSION………………………………………………………………………..…...11 Dragonflies………………………………………………………………………………….……..11 -
The Natural History of Reproduction in Solanum and Lycianthes (Solanaceae) in a Subtropical Moist Forest
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Faculty Publications in the Biological Sciences Papers in the Biological Sciences 11-28-2002 The Natural History of Reproduction in Solanum and Lycianthes (Solanaceae) in a Subtropical Moist Forest Stacey DeWitt Smith University of Nebraska - Lincoln, [email protected] Sandra Knapp Natural History Museum, London Follow this and additional works at: https://digitalcommons.unl.edu/bioscifacpub Part of the Life Sciences Commons Smith, Stacey DeWitt and Knapp, Sandra, "The Natural History of Reproduction in Solanum and Lycianthes (Solanaceae) in a Subtropical Moist Forest" (2002). Faculty Publications in the Biological Sciences. 104. https://digitalcommons.unl.edu/bioscifacpub/104 This Article is brought to you for free and open access by the Papers in the Biological Sciences at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Faculty Publications in the Biological Sciences by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Bull. nat. Hist. Mus. Lond. (Bot.) 32(2): 125–136 Issued 28 November 2002 The natural history of reproduction in Solanum and Lycianthes (Solanaceae) in a subtropical moist forest STACEY D. SMITH Department of Botany, 132 Birge Hall, 430 Lincoln Drive, University of Wisconsin, Madison WI 53706-1381, U.S.A. SANDRA KNAPP Department of Botany, The Natural History Museum, Cromwell Road, London SW7 5BD CONTENTS Introduction ............................................................................................................................................................................ -
Campanulaceae) Based on ITS and Tranl-F Sequence Data: Implications for a Reclassification
CORE Metadata, citation and similar papers at core.ac.uk Provided by University of the Western Cape Research Repository Cupido, C. N. et al. (2013). Phylogeny of Southern African and Australasian Wahlenbergioids (Campanulaceae) based on ITS and tranL-F sequence data: implications for a reclassification. Systematic Botany, 38(2): 523 – 535 http:// doi.org/10.1600/036364413X666714 dx. Phylogeny of Southern African and Australasian Wahlenbergioids (Campanulaceae) based on ITS and trnL-F sequence data: implications for a reclassification Christopher N. Cupido , Jessica M. Prebble , and William M. M. Eddie Abstract The Campanulaceae: Wahlenbergioideae currently comprises 15 genera, one of which, Wahlenbergia, is widespread over the southern continents. Southern Africa is the region with maximum wahlenbergioid diversity with 12 genera and approximately 252 species. A second center is Australasia with 38 Wahlenbergia species. This study used a broad sample of wahlenbergioid diversity from South Africa, Australia, and New Zealand to reconstruct a phylogeny based on chloroplast trnL-F and nuclear ITS sequences. Data were analyzed separately and in combination using parsimony and Bayesian methods. The results suggest that for the wahlenbergioids to be monophyletic Wahlenbergia hederacea has to be excluded and that none of the South African, Australian or New Zealand lineages are strictly monophyletic. There are five species assemblages that are in some disagreement with current classification in the family. Wahlenbergia, Prismatocarpus and Roella are shown to be non-monophyletic and implications for a reclassification are presented. Careful consideration of morphological characters is suggested before the adjustment of generic circumscriptions can be accomplished. Recent family-wide molecular phylogenetic studies have supported the view that the Campanulaceae s.s. -
Document Downloaded From: This Paper Must Be Cited As: the Final Publication Is Available at Copyright Additional Information Ht
Document downloaded from: http://hdl.handle.net/10251/96051 This paper must be cited as: San José, R.; Plazas Ávila, MDLO.; Sánchez-Mata, MC.; Cámara Hurtado, MM.; Prohens Tomás, J. (2016). Diversity in composition of scarlet (S. aethiopicum) and gboma (S. macrocarpon) eggplants and of interspecific hybrids between S. aethiopicum and common eggplant (S. melongena). Journal of Food Composition and Analysis. 45:130-140. doi:10.1016/j.jfca.2015.10.009 The final publication is available at http://doi.org/10.1016/j.jfca.2015.10.009 Copyright Elsevier Additional Information Original Research Article Diversity for composition in scarlet (S. aethiopicum) and gboma (S. macrocarpon) eggplants and in interspecific hybrids between S. aethiopicum and common eggplant (S. melongena) Raquel San José a, Mariola Plazas b, M. Cortes Sánchez-Mata a, Montaña Cámara a, Jaime Prohens b, * a Departamento de Nutrición y Bromatología II – Bromatología, Facultad de Farmacia, Universidad Complutense de Madrid, Plaza Ramón y Cajal s/n, 28040 Madrid, Spain b Instituto de Conservación y Mejora de la Agrodiversidad Valenciana, Universitat Politècnica de València, Camino de Vera 14, 46022 Valencia, Spain *Corresponding author: Tel. +34 963879424; fax: +34 963879422. E-mail address: [email protected] (J. Prohens). ABSTRACT Scarlet (Solanum aethiopicum) and gboma (S. macrocarpon) eggplants are cultivated vegetable crops native to Africa for which no comprehensive reports exist on composition and its diversity. We have evaluated diversity for composition in three varieties of scarlet eggplant and four varieties of gboma eggplant as well as in four interspecific hybrids between scarlet and common eggplant (S. melongena) and their respective parents. -
Plastid Phylogenomic Insights Into the Evolution of the Caprifoliaceae S.L. (Dipsacales)
Molecular Phylogenetics and Evolution 142 (2020) 106641 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Plastid phylogenomic insights into the evolution of the Caprifoliaceae s.l. T (Dipsacales) Hong-Xin Wanga,1, Huan Liub,c,1, Michael J. Moored, Sven Landreine, Bing Liuf,g, Zhi-Xin Zhua, ⁎ Hua-Feng Wanga, a Key Laboratory of Tropical Biological Resources of Ministry of Education, School of Life and Pharmaceutical Sciences, Hainan University, Haikou 570228, China b BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China c State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen 518083, China d Department of Biology, Oberlin College, Oberlin, OH 44074, USA e Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun, 666303, China f State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Science, Beijing 100093, China g Sino-African Joint Research Centre, Chinese Academy of Science, Wuhan 430074, China ARTICLE INFO ABSTRACT Keywords: The family Caprifoliaceae s.l. is an asterid angiosperm clade of ca. 960 species, most of which are distributed in Caprifoliaceae s.l. temperate regions of the northern hemisphere. Recent studies show that the family comprises seven major Dipsacales clades: Linnaeoideae, Zabelia, Morinoideae, Dipsacoideae, Valerianoideae, Caprifolioideae, and Diervilloideae. Plastome However, its phylogeny at the subfamily or genus level remains controversial, and the backbone relationships Phylogenetics among subfamilies are incompletely resolved. In this study, we utilized complete plastome sequencing to resolve the relationships among the subfamilies of the Caprifoliaceae s.l. and clarify several long-standing controversies. We generated and analyzed plastomes of 48 accessions of Caprifoliaceae s.l., representing 44 species, six sub- families and one genus. -
Bio 308-Course Guide
COURSE GUIDE BIO 308 BIOGEOGRAPHY Course Team Dr. Kelechi L. Njoku (Course Developer/Writer) Professor A. Adebanjo (Programme Leader)- NOUN Abiodun E. Adams (Course Coordinator)-NOUN NATIONAL OPEN UNIVERSITY OF NIGERIA BIO 308 COURSE GUIDE National Open University of Nigeria Headquarters 14/16 Ahmadu Bello Way Victoria Island Lagos Abuja Office No. 5 Dar es Salaam Street Off Aminu Kano Crescent Wuse II, Abuja e-mail: [email protected] URL: www.nou.edu.ng Published by National Open University of Nigeria Printed 2013 ISBN: 978-058-434-X All Rights Reserved Printed by: ii BIO 308 COURSE GUIDE CONTENTS PAGE Introduction ……………………………………......................... iv What you will Learn from this Course …………………............ iv Course Aims ……………………………………………............ iv Course Objectives …………………………………………....... iv Working through this Course …………………………….......... v Course Materials ………………………………………….......... v Study Units ………………………………………………......... v Textbooks and References ………………………………........... vi Assessment ……………………………………………….......... vi End of Course Examination and Grading..................................... vi Course Marking Scheme................................................................ vii Presentation Schedule.................................................................... vii Tutor-Marked Assignment ……………………………….......... vii Tutors and Tutorials....................................................................... viii iii BIO 308 COURSE GUIDE INTRODUCTION BIO 308: Biogeography is a one-semester, 2 credit- hour course in Biology. It is a 300 level, second semester undergraduate course offered to students admitted in the School of Science and Technology, School of Education who are offering Biology or related programmes. The course guide tells you briefly what the course is all about, what course materials you will be using and how you can work your way through these materials. It gives you some guidance on your Tutor- Marked Assignments. There are Self-Assessment Exercises within the body of a unit and/or at the end of each unit. -
Abundance and Diversity of Ground-Dwelling Arthropods of Pest Management Importance in Commercial Bt and Non-Bt Cotton Fields
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by DigitalCommons@University of Nebraska University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Faculty Publications: Department of Entomology Entomology, Department of 2007 Abundance and diversity of ground-dwelling arthropods of pest management importance in commercial Bt and non-Bt cotton fields J. B. Torres Universidade Federal Rural de Pernarnbuco, [email protected] J. R. Ruberson University of Georgia Follow this and additional works at: https://digitalcommons.unl.edu/entomologyfacpub Part of the Entomology Commons Torres, J. B. and Ruberson, J. R., "Abundance and diversity of ground-dwelling arthropods of pest management importance in commercial Bt and non-Bt cotton fields" (2007). Faculty Publications: Department of Entomology. 762. https://digitalcommons.unl.edu/entomologyfacpub/762 This Article is brought to you for free and open access by the Entomology, Department of at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Faculty Publications: Department of Entomology by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Annals of Applied Biology ISSN 0003-4746 RESEARCH ARTICLE Abundance and diversity of ground-dwelling arthropods of pest management importance in commercial Bt and non-Bt cotton fields J.B. Torres1,2 & J.R. Ruberson2 1 Departmento de Agronomia – Entomologia, Universidade Federal Rural de Pernambuco, Dois Irma˜ os, Recife, Pernambuco, Brazil 2 Department of Entomology, University of Georgia, Tifton, GA, USA Keywords Abstract Carabidae; Cicindelinae; Falconia gracilis; genetically modified cotton; Labiduridae; The modified population dynamics of pests targeted by the Cry1Ac toxin in predatory heteropterans; Staphylinidae. -
Insertion of Badnaviral DNA in the Late Blight Resistance Gene (R1a)
Insertion of Badnaviral DNA in the Late Blight Resistance Gene (R1a) of Brinjal Eggplant (Solanum melongena) Saad Serfraz, Vikas Sharma, Florian Maumus, Xavier Aubriot, Andrew Geering, Pierre-Yves Teycheney To cite this version: Saad Serfraz, Vikas Sharma, Florian Maumus, Xavier Aubriot, Andrew Geering, et al.. Insertion of Badnaviral DNA in the Late Blight Resistance Gene (R1a) of Brinjal Eggplant (Solanum melongena). Frontiers in Plant Science, Frontiers, 2021, 12, 10.3389/fpls.2021.683681. hal-03328857 HAL Id: hal-03328857 https://hal.inrae.fr/hal-03328857 Submitted on 30 Aug 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License fpls-12-683681 July 22, 2021 Time: 17:32 # 1 ORIGINAL RESEARCH published: 23 July 2021 doi: 10.3389/fpls.2021.683681 Insertion of Badnaviral DNA in the Late Blight Resistance Gene (R1a) of Brinjal Eggplant (Solanum melongena) Saad Serfraz1,2,3, Vikas Sharma4†, Florian Maumus4, Xavier Aubriot5, Andrew D. W. Geering6 and Pierre-Yves Teycheney1,2* -
Chec List What Survived from the PLANAFLORO Project
Check List 10(1): 33–45, 2014 © 2014 Check List and Authors Chec List ISSN 1809-127X (available at www.checklist.org.br) Journal of species lists and distribution What survived from the PLANAFLORO Project: PECIES S Angiosperms of Rondônia State, Brazil OF 1* 2 ISTS L Samuel1 UniCarleialversity of Konstanz, and Narcísio Department C.of Biology, Bigio M842, PLZ 78457, Konstanz, Germany. [email protected] 2 Universidade Federal de Rondônia, Campus José Ribeiro Filho, BR 364, Km 9.5, CEP 76801-059. Porto Velho, RO, Brasil. * Corresponding author. E-mail: Abstract: The Rondônia Natural Resources Management Project (PLANAFLORO) was a strategic program developed in partnership between the Brazilian Government and The World Bank in 1992, with the purpose of stimulating the sustainable development and protection of the Amazon in the state of Rondônia. More than a decade after the PLANAFORO program concluded, the aim of the present work is to recover and share the information from the long-abandoned plant collections made during the project’s ecological-economic zoning phase. Most of the material analyzed was sterile, but the fertile voucher specimens recovered are listed here. The material examined represents 378 species in 234 genera and 76 families of angiosperms. Some 8 genera, 68 species, 3 subspecies and 1 variety are new records for Rondônia State. It is our intention that this information will stimulate future studies and contribute to a better understanding and more effective conservation of the plant diversity in the southwestern Amazon of Brazil. Introduction The PLANAFLORO Project funded botanical expeditions In early 1990, Brazilian Amazon was facing remarkably in different areas of the state to inventory arboreal plants high rates of forest conversion (Laurance et al. -
Red Data List Special Edition
Newsletter of the Southern African Botanical Diversity Network Volume 6 No. 3 ISSN 1027-4286 November 2001 Invasive Alien Plants Part 2 Southern Mozambique Expedition Living Plant Collections: Lowveld, Mozambique, Namibia REDSABONET NewsDATA Vol. 6 No. 3 November LIST 2001 SPECIAL EDITION153 c o n t e n t s Red Data List Features Special 157 Profile: Ezekeil Kwembeya ON OUR COVER: 158 Profile: Anthony Mapaura Ferraria schaeferi, a vulnerable 162 Red Data Lists in Southern Namibian near-endemic. 159 Tribute to Paseka Mafa (Photo: G. Owen-Smith) Africa: Past, Present, and Future 190 Proceedings of the GTI Cover Stories 169 Plant Red Data Books and Africa Regional Workshop the National Botanical 195 Herbarium Managers’ 162 Red Data List Special Institute Course 192 Invasive Alien Plants in 170 Mozambique RDL 199 11th SSC Workshop Southern Africa 209 Further Notes on South 196 Announcing the Southern 173 Gauteng Red Data Plant Africa’s Brachystegia Mozambique Expedition Policy spiciformis 202 Living Plant Collections: 175 Swaziland Flora Protection 212 African Botanic Gardens Mozambique Bill Congress for 2002 204 Living Plant Collections: 176 Lesotho’s State of 214 Index Herbariorum Update Namibia Environment Report 206 Living Plant Collections: 178 Marine Fishes: Are IUCN Lowveld, South Africa Red List Criteria Adequate? Book Reviews 179 Evaluating Data Deficient Taxa Against IUCN 223 Flowering Plants of the Criterion B Kalahari Dunes 180 Charcoal Production in 224 Water Plants of Namibia Malawi 225 Trees and Shrubs of the 183 Threatened -
Principales Especies Vegetales De La Flora Silvestre Y Bosque Plantado Comercializadas En Colombia
SIEF Sistema de Informacion Estadistico Forestal PO 34/94 Rev. 1 (M) MINISTERIO DEL MEDIO AMBIENTE PRINCIPALES ESPECIES VEGETALES DE LA FLORA SILVESTRE Y BOSQUE PLANTADO COMERCIALIZADAS EN COLOMBIA SANTAFE DE BOGOTA D.C., 1.999 SIEF Sistema de Informaci6n Estadistico I~restal IDB PD 34/94 Rev. 1 (M) MINISTERtO DEL ~lEDlO AMBIE\TE PRINCIPALES ESPECIES VEGETALES DE LA FLORA SILVESTRE Y BOSQUE PLANTADO COMERCIALIZADAS EN COLOMBIA SANTAFE DE BOC:;OTA D.C.~ 1.999 Mil1istro del Media Ambiente Juan Mayr Vic:eministro de Politica y Regulacion Luis Gaviria Vic:eministra de Coordinaci6n del SINA Claudia Martinez Directora Tecnica de Ecosistemas Angela Andrade Representante de la OIMT Jairo Castano Coordinador Nacional Proyecto SiEF Fermin Mada Sanabria Coordinador Forestal Proyecto SIEF Geovani MartInez Cortes Consultora Maria Eugenia Pach6n Calder6n Editores Fernim Macfa Sanabria Geovani Martinez Cortes CONTENIDO PRESENTACl6N FAMILlAS, NOMBRES CIENTIFICOS ACEPTADOS, NOMBRES CIENTIFICOS SINONIMOS Y NOMBRES COMUNES DE LAS PRINCIPALES ESPECIES VEGETALES DE LA FLORA SILVESTRE Y BOSQUE PLP\NTADO COMERCIALIZADAS EN COLOMBIA. ............................... Pag. 1-33 REFERENCIAS BIBLIOGRAFICAS APENDICE DE FAMIUAS APENDICE DE GENEROS APENDICE DE NOMBRES CIENTiFICOS APENDICE DE NOMBRES CIENTIFICOS ACEPTADOS APENDICE DE NOMBRES CIENTIFICOS SINON/MOS APENDICE DE NOMBRES COMUNES APENDICE DE CORPORACIONES GLOSARIO DE TERMINOS ABREVIATURAS ABREVIATURAS DE ALGUNOS AUTORES PRESENTACION Es claro que el en manejo de toda informacion, la susceptibilidad y probabilidad de error siempre son significativas, especial mente si se trata del complejo lexico botanico. Par tai razon la informacion de las especies vegetales reportadas al Sistema de Informacion Estadistico Forestal (SIEF), por las diferentes instituciones ambientales regionales, ha sido sometida a una revision en cuanto a nomenclatura se refiere.