The Freshwater Ascomycetes
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LUNDY FUNGI: FURTHER SURVEYS 2004-2008 by JOHN N
Journal of the Lundy Field Society, 2, 2010 LUNDY FUNGI: FURTHER SURVEYS 2004-2008 by JOHN N. HEDGER1, J. DAVID GEORGE2, GARETH W. GRIFFITH3, DILUKA PEIRIS1 1School of Life Sciences, University of Westminster, 115 New Cavendish Street, London, W1M 8JS 2Natural History Museum, Cromwell Road, London, SW7 5BD 3Institute of Biological Environmental and Rural Sciences, University of Aberystwyth, SY23 3DD Corresponding author, e-mail: [email protected] ABSTRACT The results of four five-day field surveys of fungi carried out yearly on Lundy from 2004-08 are reported and the results compared with the previous survey by ourselves in 2003 and to records made prior to 2003 by members of the LFS. 240 taxa were identified of which 159 appear to be new records for the island. Seasonal distribution, habitat and resource preferences are discussed. Keywords: Fungi, ecology, biodiversity, conservation, grassland INTRODUCTION Hedger & George (2004) published a list of 108 taxa of fungi found on Lundy during a five-day survey carried out in October 2003. They also included in this paper the records of 95 species of fungi made from 1970 onwards, mostly abstracted from the Annual Reports of the Lundy Field Society, and found that their own survey had added 70 additional records, giving a total of 156 taxa. They concluded that further surveys would undoubtedly add to the database, especially since the autumn of 2003 had been exceptionally dry, and as a consequence the fruiting of the larger fleshy fungi on Lundy, especially the grassland species, had been very poor, resulting in under-recording. Further five-day surveys were therefore carried out each year from 2004-08, three in the autumn, 8-12 November 2004, 4-9 November 2007, 3-11 November 2008, one in winter, 23-27 January 2006 and one in spring, 9-16 April 2005. -
Molecular Systematics of the Marine Dothideomycetes
available online at www.studiesinmycology.org StudieS in Mycology 64: 155–173. 2009. doi:10.3114/sim.2009.64.09 Molecular systematics of the marine Dothideomycetes S. Suetrong1, 2, C.L. Schoch3, J.W. Spatafora4, J. Kohlmeyer5, B. Volkmann-Kohlmeyer5, J. Sakayaroj2, S. Phongpaichit1, K. Tanaka6, K. Hirayama6 and E.B.G. Jones2* 1Department of Microbiology, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla, 90112, Thailand; 2Bioresources Technology Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Paholyothin Road, Khlong 1, Khlong Luang, Pathum Thani, 12120, Thailand; 3National Center for Biothechnology Information, National Library of Medicine, National Institutes of Health, 45 Center Drive, MSC 6510, Bethesda, Maryland 20892-6510, U.S.A.; 4Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, 97331, U.S.A.; 5Institute of Marine Sciences, University of North Carolina at Chapel Hill, Morehead City, North Carolina 28557, U.S.A.; 6Faculty of Agriculture & Life Sciences, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan *Correspondence: E.B. Gareth Jones, [email protected] Abstract: Phylogenetic analyses of four nuclear genes, namely the large and small subunits of the nuclear ribosomal RNA, transcription elongation factor 1-alpha and the second largest RNA polymerase II subunit, established that the ecological group of marine bitunicate ascomycetes has representatives in the orders Capnodiales, Hysteriales, Jahnulales, Mytilinidiales, Patellariales and Pleosporales. Most of the fungi sequenced were intertidal mangrove taxa and belong to members of 12 families in the Pleosporales: Aigialaceae, Didymellaceae, Leptosphaeriaceae, Lenthitheciaceae, Lophiostomataceae, Massarinaceae, Montagnulaceae, Morosphaeriaceae, Phaeosphaeriaceae, Pleosporaceae, Testudinaceae and Trematosphaeriaceae. Two new families are described: Aigialaceae and Morosphaeriaceae, and three new genera proposed: Halomassarina, Morosphaeria and Rimora. -
The Phylogeny of Plant and Animal Pathogens in the Ascomycota
Physiological and Molecular Plant Pathology (2001) 59, 165±187 doi:10.1006/pmpp.2001.0355, available online at http://www.idealibrary.com on MINI-REVIEW The phylogeny of plant and animal pathogens in the Ascomycota MARY L. BERBEE* Department of Botany, University of British Columbia, 6270 University Blvd, Vancouver, BC V6T 1Z4, Canada (Accepted for publication August 2001) What makes a fungus pathogenic? In this review, phylogenetic inference is used to speculate on the evolution of plant and animal pathogens in the fungal Phylum Ascomycota. A phylogeny is presented using 297 18S ribosomal DNA sequences from GenBank and it is shown that most known plant pathogens are concentrated in four classes in the Ascomycota. Animal pathogens are also concentrated, but in two ascomycete classes that contain few, if any, plant pathogens. Rather than appearing as a constant character of a class, the ability to cause disease in plants and animals was gained and lost repeatedly. The genes that code for some traits involved in pathogenicity or virulence have been cloned and characterized, and so the evolutionary relationships of a few of the genes for enzymes and toxins known to play roles in diseases were explored. In general, these genes are too narrowly distributed and too recent in origin to explain the broad patterns of origin of pathogens. Co-evolution could potentially be part of an explanation for phylogenetic patterns of pathogenesis. Robust phylogenies not only of the fungi, but also of host plants and animals are becoming available, allowing for critical analysis of the nature of co-evolutionary warfare. Host animals, particularly human hosts have had little obvious eect on fungal evolution and most cases of fungal disease in humans appear to represent an evolutionary dead end for the fungus. -
Misapplications Type Species Generic (Excluded Species) the Species
PERS OONIA Published by Rijksherbarium / Hortus Botanicus, Leiden Volume 16, Part 2, pp. 141-190 (1996) Contributions towards a monograph of Phoma (Coelomycetes) — III. 2. Misapplications of the type species name and the generic synonyms of section Plenodomus (Excluded species) G.H. Boerema W.M. Loerakker & Maria+E.C. Hamers Various old records of Phoma lingam (teleomorph Leptosphaeria maculans) on non-crucif- erous plants proved to be based on misidentifications. In the past the fungus has also often been confused with other fungi occurring on crucifers. Forty-five species formerly classified the and under generic synonyms Plenodomus, Diploptenodomus, Leptophoma Deuterophoma excluded from Phoma of them were sect. Plenodomus, seventeen being non-scleroplecten- of Phoma. Asteromella Asteromella and Phoma versa- chymatous species cocogena, pomi bilis are described as new species and twelve new combinations are proposed: Ascochyta Pha- aggregata (Höhnel), Cytosporella cenangium(Corda), Fusicoccum hoveniae (Gucevicz), cidiella hiemalis (Desm.), Phoma cruenta (Sydow), Phoma filarszkyana (Moesz), Phoma haematites (Petrak), Phoma syriaca (Petrak), Phomopsis allescheriana (P. Henn.), Phomop- sis destruens (Harter),Pleurophoma cava (Schulzer) and Pyrenochaeta corni (Batista & Vital). The species, subspecies and varieties at present classified in Phoma sect. Plenodomus (Preuss) Boerema et al. have been treated in Contribution III—1 of this series (Boerema 4 in the et al., 1994) . They are characterized by theirability to produce scleroplectenchyma peridium of the pycnidium, i.e. hyaline cells with thick walls and a relatively small lumen. Many of these anamorphs, especially those occurring on herbaceous plants, are meta- genetically related to scleroplectenchyma-producing species of the Ascomycete genus Leptosphaeria Ces. & de Not. (group doliolum Holm, 1957). -
Towards a Phylogenetic Clarification of Lophiostoma / Massarina and Morphologically Similar Genera in the Pleosporales
Fungal Diversity Towards a phylogenetic clarification of Lophiostoma / Massarina and morphologically similar genera in the Pleosporales Zhang, Y.1, Wang, H.K.2, Fournier, J.3, Crous, P.W.4, Jeewon, R.1, Pointing, S.B.1 and Hyde, K.D.5,6* 1Division of Microbiology, School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, P.R. China 2Biotechnology Institute, Zhejiang University, 310029, P.R. China 3Las Muros, Rimont, Ariège, F 09420, France 4Centraalbureau voor Schimmelcultures, Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands 5School of Science, Mae Fah Luang University, Tasud, Muang, Chiang Rai 57100, Thailand 6International Fungal Research & Development Centre, The Research Institute of Resource Insects, Chinese Academy of Forestry, Kunming, Yunnan, P.R. China 650034 Zhang, Y., Wang, H.K., Fournier, J., Crous, P.W., Jeewon, R., Pointing, S.B. and Hyde, K.D. (2009). Towards a phylogenetic clarification of Lophiostoma / Massarina and morphologically similar genera in the Pleosporales. Fungal Diversity 38: 225-251. Lophiostoma, Lophiotrema and Massarina are similar genera that are difficult to distinguish morphologically. In order to obtain a better understanding of these genera, lectotype material of the generic types, Lophiostoma macrostomum, Lophiotrema nucula and Massarina eburnea were examined and are re-described. The phylogeny of these genera is investigated based on the analysis of 26 Lophiostoma- and Massarina-like taxa and three genes – 18S, 28S rDNA and RPB2. These taxa formed five well-supported sub-clades in Pleosporales. This study confirms that both Lophiostoma and Massarina are polyphyletic. Massarina-like taxa can presently be differentiated into two groups – the Lentithecium group and the Massarina group. -
On the Structure, Ecology and Distribution of the Species of Mitrula S.Lat
On the structure, ecology and distribution of the species of Mitrula s.lat. (Ascomycetes, Geoglossaceae) Esteri Kankainen The Subarctic Research Station of the University of Turku, Turku. Finland Introduction the notes of KALLIO & KANKAINEN ( 1964, 1966) are also plotted on the maps (Figs. 1, The matter under consideration is a part 3). of my research including the larger fungi in I express my best thanks. for direction and arctic and subarctic regions. For eight years I advice of great value to my teacher Prof. Paa have also collected Mitrula material, and so vo Kallio, for valuable notes and discussion me notes are published in KALLIO & KANKAI to Phil. lie. Tauno Ulvinen, for determinat NEN (1964, 1966 ). I have had the opportunity ion of the mosses in question to Phil. mag. to participate on the excursions of Kevo, the Unto Laine, and for the linguistic revision to Subarctic Research Station of the University Mrs. Linna Miiller-Wille. I have received of Turku under the leadership of Prof. Paavo financial support from Suomen. Kulttuurira Kallio. Our Mitrula collections from these hasto. trips to Spitsbergen in 1966 and northeastern Mit r u l a Fr., Syst. Myc. 1, p. 491. 1821. Canada in 1967 are taken into consideration (sensu strict.) in the present paper. The specimens studied lMAI ( 1941 ) and MAAS GEESTERANUS are preserved in the following herbariums: ( 1964) have unravelled the history of the genus Mitrula, and we only ascertain the lar H Botanical Museum of the Univer ge variation in its content from one extreme sity of Helsinki to the other, from the wide opinion of HFR Finnish Forest Research Institute, KARSTEN ( 1871) and MASSEE ( 1897) to the Helsinki narrow one of IMAI (1941, 1956) and MAAS HPP Department of Phytopathology, GEESTERANUS ( 1964). -
Prilozi Contributions
ISSN 1857–9027 e-ISSN 1857–9949 MAKEDONSKA AKADEMIJA NA NAUKITE I UMETNOSTITE ODDELENIE ZA PRIRODNO-MATEMATI^KI I BIOTEHNI^KI NAUKI MACEDONIAN ACADEMY OF SCIENCES AND ARTS SECTION OF NATURAL, MATHEMATICAL AND BIOTECHNICAL SCIENCES PRILOZI CONTRIBUTIONS 40 (2) СКОПЈЕ – SKOPJE 2019 Publisher: Macedonian Academy of Sciences and Arts Editor-in-Chief Gligor Jovanovski, Macedonia Guest editors Kiril Sotirovski, Macedonia Viktor Gjamovski, Macedonia Co-editor-in-Chief Dončo Dimovski, Macedonia E d i t o r i a l B o a r d: Sjur Baardsen, Norway Lars Lonnstedt, Sweden Ivan Blinkov, Macedonia Vlado Matevski, Macedonia Blažo Boev, Macedonia Dubravka Matković-Čalogović, Croatia Stevo Božinovski, USA Nenad Novkovski, Macedonia Mitrofan Cioban, Moldova Nikola Panov, Macedonia Andraž Čarni, Slovenia Shushma Patel, England Ludwik Dobrzynski, France Dejan Prelević, Germany Gjorgji Filipovski, Macedonia Kiril Sotirovski, Macedonia Viktor Gjamovski, Macedonia Hari M. Srivastava, Canada Marjan Gušev, Macedonia Ivo Šlaus, Croatia Gordan Karaman, Montenegro Bogdan Šolaja, Serbia Borislav Kobiljski, Serbia Franci Štampar, Slovenia Dénes Loczy, Hungary Petar Zhelev, Bulgaria * Editorial assistant: Sonja Malinovska * Macedonian language adviser: Sofija Cholakovska-Popovska * Technical editor: Sonja Malinovska * Printed by: MAR-SAZ – Skopje * Number of copies: 300 * 2019 Published twice a year The Contributions, Sec. Nat. Math. Biotech. Sci. is indexed in: Chemical Abstracts, Mathematical Reviews, Google Scholar, EBSCO and DOAJ http://manu.edu.mk/contributions/NMBSci/ Прилози, Одд. прир. мат. биотех. науки, МАНУ Том Бр. стр. Скопје 40 2 145–276 2019 Contributions, Sec. Nat. Math. Biotech. Sci., MASA Vol. No. pp. Skopje T ABL E O F CONTENTS Marjan Andreevski, Duško Mukaetov CONTENT OF EXCHANGEABLE CATIONS IN ALBIC LUVISOLS IN THE REPUBLIC OF MACEDONIA ........................................................................................................ -
271 REFERENCES Abdullah, S.K. and Taj-Aldeen, S.J. (1989
271 REFERENCES Abdullah, S.K. and Taj-Aldeen, S.J. (1989). Extracellular enzymatic activity of aquatic and aero-aquatic conidial fungi. Hydrobiologia 174: 217–223. Abler, S.W. (2003). Ecology and taxonomy of Leptosphaerulina spp. associated with turfgrasses in the United States. M.S. Thesis. Faculty of the Virginia Polytechnic Institute and State University, Blacksburg, Virginia. Adams, D.J. (2004). Fungal cell wall chitinases and glucanases. Microbiology 150: 2029–2035. Agrios, G.N. (2005). Plant Pathology. 5th ed. Department of Plant Pathology, University of Florida. Elsevier Academic Press. Ahn, Y. (1996). Taxonomic revision of taxa originally described in Leptosphaeria from species in the Ranunculaceae, Papaveraceae and Magnoliaceae. Ph.D. Thesis. University of Illinois at Urbana-Campaign. Ainsworth, G.C. and Bisby, G.R. (1943). Dictionary of The Fungi. Wallingford, UK, CAB International. Alexopoulos, C.J., Mims, C.W. and Blackwell, M. (1996). Introductory Mycology. 4th ed. New York, John Wiley & Sons, Inc. Alias, S.A., Kuthubutheen, A.J.and Jones, E.B.G. (1995). Frequency of occurrence of fungi on wood in Malaysian mangroves. Hydrobiologia 295 : 97–106. Allen, R.B., Buchanan, P.K., Clinton, P.W. and Cone, A.J. (2000). Composition and diversity of fungi on decaying logs in a New Zealand temperate beech 272 (Nothofagus) forest. Canadian Journal of Forest Research 30: 1025–1033. Anderson, N.H. and Sedell, J.R. (1979). Detritus processing by macroinvertebrates in stream ecosystems. Annual Review of Entomology 24: 351–377. Ando, K. (1992). A Study of terrestrial aquatic Hyphomycetes. Transaction of Mycological Society of Japan 33: 415–425. Anonymous. (1995). JMP® Statistics and graphics guide. -
Carotenoid Distribution in Nature
Chapter 1 Carotenoid Distribution in Nature Jennifer Alcaíno, Marcelo Baeza, and Víctor Cifuentes Abstract Carotenoids are naturally occurring red, orange and yellow pigments that are synthesized by plants and some microorganisms and fulfill many important physiological functions. This chapter describes the distribution of carotenoid in microorganisms, including bacteria, archaea, microalgae, filamentous fungi and yeasts. We will also focus on their functional aspects and applications, such as their nutritional value, their benefits for human and animal health and their potential protection against free radicals. The central metabolic pathway leading to the synthesis of carotenoids is described as the three following principal steps: (i) the synthesis of isopentenyl pyrophosphate and the formation of dimethylallyl pyrophosphate, (ii) the synthesis of geranylgeranyl pyrophosphate and (iii) the synthesis of carotenoids per se, highlighting the differences that have been found in several carotenogenic organisms and providing an evolutionary perspective. Finally, as an example, the synthesis of the xanthophyll astaxanthin is discussed. Keywords Carotenogenesis • Microbial carotenoids • Astaxanthin 1.1 Introduction Carotenoids are red, orange and yellow natural pigments that are synthesized by plants and some microorganisms fulfilling important physiological functions. For example, in photosynthetic organisms, carotenoids are essential for photosynthesis and photoprotection, whereas in non-photosynthetic organisms; they participate in alleviating photooxidative damage. Considering their properties, carotenoids have various industrial applications as dyes, and due to their various beneficial effects for health, they have been exploited by the food and nutraceutical industries and recently, by the pharmacological industry, with an estimated annual production greater than 100 million tons (Fraser and Bramley 2004). For these reasons, there J. -
The Family Geoglossaceae Spicuous Inoperculate Discomycetes
PERSOONIA Published by Rijksherbarium / Hortus Botanicus, Leiden Volume Part 405-430 15, 4, pp. (1994) Ultrastructure of the ascus apical apparatus in Leotia lubrica and some Geoglossaceae (Leotiales, Ascomycotina) Gerard+J.M. Verkley Rijksherbarium/Hortus Botanicus, P.O. Box 9514, 2300 RA Leiden, The Netherlands The ultrastructure of the apical apparatus and lateral ascus wall is compared in Leotia lubrica and five species currently placed in the Geoglossaceae. The lateral ascus wall consists of two layers, of which the inner one increases in thickness in the apical apparatus. Considerable differences in substructure of both layers are described. On the basis of generalmorphology of the apical apparatus, structure and PA-TCH-SP reactivity of the apical thickening and annulus, and occurrence of an annular protrusion four main categories are distinguished. A reactive annulus is demonstrated in the apical apparatus of all species, including L. lubrica. The species studied are arranged as follows: Category 1a. Geoglossum nigritum and G. cookeianum; 1b. Trichoglossum hirsutum; 2. Leotia lubrica; 3. Microglossum viride; 4. Mitrula paludosa. Most fundamental is considered the position of the annulus in the api- cal thickening, either fully (category 1) or partly (2—4) occupying the apical thickening, either associated with an annular protrusion (3, 4) or not (1, 2). The data on the ultrastruc- ture of the ascus apical apparatus and lateral wall, and mode of dehiscence indicate that L. lubrica takes an isolated position, distant from the other Leotioideae (including Ombro- philoideae) and the Geoglossaceae. Geoglossum, Trichoglossum, and Microglossum can best be maintained as separate genera in the family Geoglossaceae. -
Suomen Helttasienten Ja Tattien Ekologia, Levinneisyys Ja Uhanalaisuus
Suomen ympäristö 769 LUONTO JA LUONNONVARAT Pertti Salo, Tuomo Niemelä, Ulla Nummela-Salo ja Esteri Ohenoja (toim.) Suomen helttasienten ja tattien ekologia, levinneisyys ja uhanalaisuus .......................... SUOMEN YMPÄRISTÖKESKUS Suomen ympäristö 769 Pertti Salo, Tuomo Niemelä, Ulla Nummela-Salo ja Esteri Ohenoja (toim.) Suomen helttasienten ja tattien ekologia, levinneisyys ja uhanalaisuus SUOMEN YMPÄRISTÖKESKUS Viittausohje Viitatessa tämän raportin lukuihin, käytetään lukujen otsikoita ja lukujen kirjoittajien nimiä: Esim. luku 5.2: Kytövuori, I., Nummela-Salo, U., Ohenoja, E., Salo, P. & Vauras, J. 2005: Helttasienten ja tattien levinneisyystaulukko. Julk.: Salo, P., Niemelä, T., Nummela-Salo, U. & Ohenoja, E. (toim.). Suomen helttasienten ja tattien ekologia, levin- neisyys ja uhanalaisuus. Suomen ympäristökeskus, Helsinki. Suomen ympäristö 769. Ss. 109-224. Recommended citation E.g. chapter 5.2: Kytövuori, I., Nummela-Salo, U., Ohenoja, E., Salo, P. & Vauras, J. 2005: Helttasienten ja tattien levinneisyystaulukko. Distribution table of agarics and boletes in Finland. Publ.: Salo, P., Niemelä, T., Nummela- Salo, U. & Ohenoja, E. (eds.). Suomen helttasienten ja tattien ekologia, levinneisyys ja uhanalaisuus. Suomen ympäristökeskus, Helsinki. Suomen ympäristö 769. Pp. 109-224. Julkaisu on saatavana myös Internetistä: www.ymparisto.fi/julkaisut ISBN 952-11-1996-9 (nid.) ISBN 952-11-1997-7 (PDF) ISSN 1238-7312 Kannen kuvat / Cover pictures Vasen ylä / Top left: Paljakkaa. Utsjoki. Treeless alpine tundra zone. Utsjoki. Kuva / Photo: Esteri Ohenoja Vasen ala / Down left: Jalopuulehtoa. Parainen, Lenholm. Quercus robur forest. Parainen, Lenholm. Kuva / Photo: Tuomo Niemelä Oikea ylä / Top right: Lehtolohisieni (Laccaria amethystina). Amethyst Deceiver (Laccaria amethystina). Kuva / Photo: Pertti Salo Oikea ala / Down right: Vanhaa metsää. Sodankylä, Luosto. Old virgin forest. Sodankylä, Luosto. Kuva / Photo: Tuomo Niemelä Takakansi / Back cover: Ukonsieni (Macrolepiota procera). -
Distribution of <I>Alternaria</I> Species Among Sections. 2. Section <I>Alternaria</I>
ISSN (print) 0093-4666 © 2015. Mycotaxon, Ltd. ISSN (online) 2154-8889 MYCOTAXON http://dx.doi.org/10.5248/130.941 Volume 130, pp. 941–949 October–December 2015 Distribution of Alternaria species among sections. 2. Section Alternaria Philipp B. Gannibal Laboratory of Mycology and Phytopathology, All-Russian Institute of Plant Protection, Shosse Podbelskogo 3, Saint Petersburg, 196608, Russia Correspondence to: [email protected] Abstract — Among several groups of small-spored Alternaria species, A. sect. Alternaria (containing the generic type) has been found to be isolated, based on phylogenetic as well as morphological data. Molecular phylogenetic data confirm inclusion of twenty-one species in this section besides the type species. Examination of additional material, conforming to the morphological description for the section but not as yet phylogenetically characterized, allow confirmation of an additional 37 species. All 59 species are listed, and an emended description of Alternaria sect. Alternaria is presented. Key words — Alternaria alternata, A. herbiphorbicola, A. gomphrenae, Pseudoalternaria Introduction The genus Alternaria Nees is a large taxonomic group that comprises approximately 280 species (Simmons 2007). A series of large-scale works has attempted to resolve the phylogeny of Alternaria and other alternarioid hyphomycetes by employing more than ten different genomic loci (Pryor & Bigelow 2003; Hong et al. 2005; Runa et al. 2009; Lawrence et al. 2012, 2013, 2014; Woudenberg et al. 2013). Several well-supported phylogenetic lineages have been revealed within the alternarioid hyphomycetes, resulting in several taxonomic novelties. The genus Alternaria was divided into eight taxonomic sections by Lawrence et al. (2013). Presenting an alternative concept, Woudenberg et al.