Distribution, Composition and Functions of Gelatinous Tissues in Deep-Sea Fishes
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												Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. - 
												
												Phylogeny Classification Additional Readings Clupeomorpha and Ostariophysi
Teleostei - AccessScience from McGraw-Hill Education http://www.accessscience.com/content/teleostei/680400 (http://www.accessscience.com/) Article by: Boschung, Herbert Department of Biological Sciences, University of Alabama, Tuscaloosa, Alabama. Gardiner, Brian Linnean Society of London, Burlington House, Piccadilly, London, United Kingdom. Publication year: 2014 DOI: http://dx.doi.org/10.1036/1097-8542.680400 (http://dx.doi.org/10.1036/1097-8542.680400) Content Morphology Euteleostei Bibliography Phylogeny Classification Additional Readings Clupeomorpha and Ostariophysi The most recent group of actinopterygians (rayfin fishes), first appearing in the Upper Triassic (Fig. 1). About 26,840 species are contained within the Teleostei, accounting for more than half of all living vertebrates and over 96% of all living fishes. Teleosts comprise 517 families, of which 69 are extinct, leaving 448 extant families; of these, about 43% have no fossil record. See also: Actinopterygii (/content/actinopterygii/009100); Osteichthyes (/content/osteichthyes/478500) Fig. 1 Cladogram showing the relationships of the extant teleosts with the other extant actinopterygians. (J. S. Nelson, Fishes of the World, 4th ed., Wiley, New York, 2006) 1 of 9 10/7/2015 1:07 PM Teleostei - AccessScience from McGraw-Hill Education http://www.accessscience.com/content/teleostei/680400 Morphology Much of the evidence for teleost monophyly (evolving from a common ancestral form) and relationships comes from the caudal skeleton and concomitant acquisition of a homocercal tail (upper and lower lobes of the caudal fin are symmetrical). This type of tail primitively results from an ontogenetic fusion of centra (bodies of vertebrae) and the possession of paired bracing bones located bilaterally along the dorsal region of the caudal skeleton, derived ontogenetically from the neural arches (uroneurals) of the ural (tail) centra. - 
												
												Species Divers. 17(2): 169-172 (2012)
Species Diversity 17: 169–172 25 November 2012 Record of a Rare Ophidiid Fish, Barathrites iris (Actinopterygii: Teleostei: Ophidiiformes), from o Southern Japan Shinpei Ohashi1,3, Hisashi Imamura2 and Mamoru Yabe2 1 Chair of Marine Biology and Biodiversity (Systematic Ichthyology), Graduate School of Fisheries Sciences, Hokkaido University, 3-1-1 Minato-cho, Hakodate, Hokkaido 041-8611, Japan E-mail: [email protected] 2 Laboratory of Marine Biology and Biodiversity (Systematic Ichthyology), Research Faculty of Fisheries Sciences, Hokkaido University, Hakodate, Hokkaido 041-8611, Japan 3 Corresponding author (Received 14 November 2011; Accepted 23 March 2012) Two specimens of a rare ophidiid sh, Barathrites iris Zugmayer, 1911, were collected from the abyssal Pacic Ocean, o Kagoshima Prefecture, southern Japan. ey agree with the diagnosis of Barathrites in having two pelvic-n rays, ve to six long gill rakers on the anterior gill arch, and a small head (33.5–33.8% of pre-anal-n length) and eye (1.6–1.8% standard length, SL). Additionally, they can be separated from B. parri Nybelin, 1957, the only other known species of the genus, by their lack of basibranchial tooth patches, smaller eye (10.7–12.3% head length), and shorter pre-dorsal-n region (17.1–18.9% SL). Previously B. iris was said to dier from B. parri in the number of branchiostegal rays (six versus seven, respectively), but one of the present specimens of B. iris (413 mm SL) has seven branchiostegal rays on the le side and six on the right. Earlier workers have suggested the occurrence of Barathrites in the Pacic Ocean, but no documented records from this ocean appear to exist. - 
												
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OPHIDIIFORMES (part 2) · 1 The ETYFish Project © Christopher Scharpf and Kenneth J. Lazara COMMENTS: v. 9.0 - 24 Aug. 2020 Order OPHIDIIFORMES (part 2 of 2) Suborder BYTHITOIDEI Family BYTHITIDAE Viviparous (or Livebearing) Brotulas 34 genera · 125 species · Taxonomic note: includes taxa sometimes placed in Aphyonidae. Acarobythites Machida 2000 acaro, small, referring to its small size (up to 25.2 mm SL); Bythites, type genus of family Acarobythites larsonae Machida 2000 in honor of Helen Larson, Curator of Fishes, Museum and Art Gallery of the Northern Territory (Darwin, Australia), who kindly sent bythitid and ophidiid specimens to Machida for study Anacanthobythites Anderson 2008 an-, not and acanthus, thorn or prickle, referring to lack of developed gill rakers on first branchial arch; Bythites, type genus of family Anacanthobythites platycephalus Anderson 2008 platys, broad; cephalus, head, referring to its depressed head Anacanthobythites tasmaniensis Anderson 2008 -ensis, suffix denoting place: Tasmania, Australia, type locality Aphyonus Günther 1878 aphya, anchovy or small, translucent fish, referring to its transparent, colorless skin; onus, presumably a latinization of onos, a name dating to Aristotle, originally referring to Phycis blennoides (Gadiformes: Gadidae) but often mistakenly applied to Merluccius merluccius (Gadiformes: Merlucciidae) and hence used several times by Günther as a suffix for a hake-like fish Aphyonus gelatinosus Günther 1878 gelatinous or jelly-like, referring to “thin, scaleless, loose” skin, forming - 
												
												A Dataset of Deep-Sea Fishes Surveyed by Research Vessels in the Waters Around Taiwan
A peer-reviewed open-access journal ZooKeys 466:A Dataset 103–110 of(2014) Deep-Sea Fishes Surveyed by Research Vessels in the Waters around Taiwan 103 doi: 10.3897/zookeys.466.8523 DATA PAPER http://zookeys.pensoft.net Launched to accelerate biodiversity research A Dataset of Deep-Sea Fishes Surveyed by Research Vessels in the Waters around Taiwan Kwang-Tsao Shao1, Jack Lin1, Hsin-Ming Yeh2, Mao-Yin Lee1, Lee-Sea Chen1, Hen-Wei Lin1 1 Biodiversity Research Center, Academia Sinica, No. 128, Sec. 2, Academia Rd. Nankang Dist., 115, Taipei, TAIWAN 2 Coastal and Offshore Resources Research Center, Fisheries Research Institute, COA, No.6, Yugang N. 3rd Rd., Qianzhen Dist., 806, Kaohsiung City, TAIWAN Corresponding authors: Jack Lin ([email protected]); Hsin-Ming Yeh ([email protected]) Academic editor: L. Penev | Received 29 August 2014 | Accepted 1 December 2014 | Published 19 December 2014 http://zoobank.org/083BACA5-921D-4C9D-8243-5CDC40F66C43 Citation: Shao K-T, Lin J, Yeh H-M, Lee M-Y, Chen L-S, Lin H-W (2014) A Dataset of Deep-Sea Fishes Surveyed by Research Vessels in the Waters around Taiwan. ZooKeys 466: 103–110. doi: 10.3897/zookeys.466.8523 Abstract The study of deep-sea fish fauna is hampered by a lack of data due to the difficulty and high cost incurred in its surveys and collections. Taiwan is situated along the edge of the Eurasia plate, at the junction of three Large Marine Ecosystems or Ecoregions of the East China Sea, South China Sea and the Philippines. As nearly two-thirds of its surrounding marine ecosystems are deep-sea environments, Taiwan is expected to hold a rich diversity of deep-sea fish. - 
												
												Cusk Eels, Brotulas [=Cherublemma Trotter [E
FAMILY Ophidiidae Rafinesque, 1810 - cusk eels SUBFAMILY Ophidiinae Rafinesque, 1810 - cusk eels [=Ofidini, Otophidioidei, Lepophidiinae, Genypterinae] Notes: Ofidini Rafinesque, 1810b:38 [ref. 3595] (ordine) Ophidion [as Ophidium; latinized to Ophididae by Bonaparte 1831:162, 184 [ref. 4978] (family); stem corrected to Ophidi- by Lowe 1843:92 [ref. 2832], confirmed by Günther 1862a:317, 370 [ref. 1969], by Gill 1872:3 [ref. 26254] and by Carus 1893:578 [ref. 17975]; considered valid with this authorship by Gill 1893b:136 [ref. 26255], by Goode & Bean 1896:345 [ref. 1848], by Nolf 1985:64 [ref. 32698], by Patterson 1993:636 [ref. 32940] and by Sheiko 2013:63 [ref. 32944] Article 11.7.2; family name sometimes seen as Ophidionidae] Otophidioidei Garman, 1899:390 [ref. 1540] (no family-group name) Lepophidiinae Robins, 1961:218 [ref. 3785] (subfamily) Lepophidium Genypterinae Lea, 1980 (subfamily) Genypterus [in unpublished dissertation: Systematics and zoogeography of cusk-eels of the family Ophidiidae, subfamily Ophidiinae, from the eastern Pacific Ocean, University of Miami, not available] GENUS Cherublemma Trotter, 1926 - cusk eels, brotulas [=Cherublemma Trotter [E. S.], 1926:119, Brotuloides Robins [C. R.], 1961:214] Notes: [ref. 4466]. Neut. Cherublemma lelepris Trotter, 1926. Type by monotypy. •Valid as Cherublemma Trotter, 1926 -- (Pequeño 1989:48 [ref. 14125], Robins in Nielsen et al. 1999:27, 28 [ref. 24448], Castellanos-Galindo et al. 2006:205 [ref. 28944]). Current status: Valid as Cherublemma Trotter, 1926. Ophidiidae: Ophidiinae. (Brotuloides) [ref. 3785]. Masc. Leptophidium emmelas Gilbert, 1890. Type by original designation (also monotypic). •Synonym of Cherublemma Trotter, 1926 -- (Castro-Aguirre et al. 1993:80 [ref. 21807] based on placement of type species, Robins in Nielsen et al. - 
												
												Updated Checklist of Marine Fishes (Chordata: Craniata) from Portugal and the Proposed Extension of the Portuguese Continental Shelf
European Journal of Taxonomy 73: 1-73 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2014.73 www.europeanjournaloftaxonomy.eu 2014 · Carneiro M. et al. This work is licensed under a Creative Commons Attribution 3.0 License. Monograph urn:lsid:zoobank.org:pub:9A5F217D-8E7B-448A-9CAB-2CCC9CC6F857 Updated checklist of marine fishes (Chordata: Craniata) from Portugal and the proposed extension of the Portuguese continental shelf Miguel CARNEIRO1,5, Rogélia MARTINS2,6, Monica LANDI*,3,7 & Filipe O. COSTA4,8 1,2 DIV-RP (Modelling and Management Fishery Resources Division), Instituto Português do Mar e da Atmosfera, Av. Brasilia 1449-006 Lisboa, Portugal. E-mail: [email protected], [email protected] 3,4 CBMA (Centre of Molecular and Environmental Biology), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal. E-mail: [email protected], [email protected] * corresponding author: [email protected] 5 urn:lsid:zoobank.org:author:90A98A50-327E-4648-9DCE-75709C7A2472 6 urn:lsid:zoobank.org:author:1EB6DE00-9E91-407C-B7C4-34F31F29FD88 7 urn:lsid:zoobank.org:author:6D3AC760-77F2-4CFA-B5C7-665CB07F4CEB 8 urn:lsid:zoobank.org:author:48E53CF3-71C8-403C-BECD-10B20B3C15B4 Abstract. The study of the Portuguese marine ichthyofauna has a long historical tradition, rooted back in the 18th Century. Here we present an annotated checklist of the marine fishes from Portuguese waters, including the area encompassed by the proposed extension of the Portuguese continental shelf and the Economic Exclusive Zone (EEZ). The list is based on historical literature records and taxon occurrence data obtained from natural history collections, together with new revisions and occurrences. - 
												
												UC San Diego Bulletin of the Scripps Institution of Oceanography
UC San Diego Bulletin of the Scripps Institution of Oceanography Title Systematics, Variation, Distribution, And Biology Of Rockfishes Of The Subgenus Sebastomus (Pisces, Scorpaenidae, Sebastes) Permalink https://escholarship.org/uc/item/3g86j50t Author Chen, Lo-Chai Publication Date 1971-06-18 Peer reviewed eScholarship.org Powered by the California Digital Library University of California SYSTEMATICS, VARIATION, DISTRIBUTION, AND BIOLOGY OF ROCKFISHES OF THE SUBGENUS SEBASTOMUS (PISCES, SCORPAENIDAE, SEBASTES) BY LO-CHAI CHEN BULLETIN OF THE SCRIPPS INSTITUTION OF OCEANOGRAPHY UNIVERSITY OF CALIFORNIA, SAN DIEGO LA JOLLA, CALIFORNIA Vol ume 18 UNIVERSITY OF CALIFORNIA PRESS BULLETIN OF THE SCRIPPS INSTTTUTION OF OCEANOGRAPHY OF THE UNIVERSITY OF CALIFORNIA LA JOLLA, CALIFORNIA ADVISORY EDITORS: G. O. S. ARRHENIUS, C. S. Cox, E. W. FACER, C. H. HAND, TODD NEWBERRY, M. B. SCHAEFER, E. L. WINTERER Approved for publication May 15, 1970 Issued June 18, 1971 UNIVERSITY OF CALIFORNIA PRESS BERKELEY AND LOS ANGELES CALIFORNIA UNIVERSITY OF CALIFORNIA PRESS, LTD. LONDON, ENGLAND ISBN: 0-520-093-70-4 LIBRARY OF CONGRESS CATALOG CARD NUMBER: 70–631857 [CONTRIBUTION FROM THE SCRIPPS INSTITUTION OF OCEANOGRAPHY, NEW SERIES] © 1971 BY THE REGENTS OF THE UNIVERSITY OF CALIFORNIA PRINTED IN THE UNITED STATES OF AMERICA CONTENTS Abstract 1 Introduction 1 Acknowledgments 2 Materials and Methods 3 Taxonomy 4 Genus Sebastes Cuvier, 1829 4 Subgenus Sebastomus Gill, 1864 6 Key to north Pacific species referred to subgenus 8 Sebastomus Sebastes constellatus (Jordan and Gilbert, 1880) 9 Sebastes rosaceus Girard, 1854 11 Sebastes helvomaculatus Ayres, 1859 14 Sebastes simulator, sp. nov. 16 Sebastes ensifer, sp. nov. 19 Sebastes notius, sp. - 
												
												XIV. Appendices
Appendix 1, Page 1 XIV. Appendices Appendix 1. Vertebrate Species of Alaska1 * Threatened/Endangered Fishes Scientific Name Common Name Eptatretus deani black hagfish Lampetra tridentata Pacific lamprey Lampetra camtschatica Arctic lamprey Lampetra alaskense Alaskan brook lamprey Lampetra ayresii river lamprey Lampetra richardsoni western brook lamprey Hydrolagus colliei spotted ratfish Prionace glauca blue shark Apristurus brunneus brown cat shark Lamna ditropis salmon shark Carcharodon carcharias white shark Cetorhinus maximus basking shark Hexanchus griseus bluntnose sixgill shark Somniosus pacificus Pacific sleeper shark Squalus acanthias spiny dogfish Raja binoculata big skate Raja rhina longnose skate Bathyraja parmifera Alaska skate Bathyraja aleutica Aleutian skate Bathyraja interrupta sandpaper skate Bathyraja lindbergi Commander skate Bathyraja abyssicola deepsea skate Bathyraja maculata whiteblotched skate Bathyraja minispinosa whitebrow skate Bathyraja trachura roughtail skate Bathyraja taranetzi mud skate Bathyraja violacea Okhotsk skate Acipenser medirostris green sturgeon Acipenser transmontanus white sturgeon Polyacanthonotus challengeri longnose tapirfish Synaphobranchus affinis slope cutthroat eel Histiobranchus bathybius deepwater cutthroat eel Avocettina infans blackline snipe eel Nemichthys scolopaceus slender snipe eel Alosa sapidissima American shad Clupea pallasii Pacific herring 1 This appendix lists the vertebrate species of Alaska, but it does not include subspecies, even though some of those are featured in the CWCS. - 
												
												Pseudoliparis Swirei Sp. Nov.: a Newly-Discovered Hadal Snailfish (Scorpaeniformes: Liparidae) from the Mariana Trench
Zootaxa 4358 (1): 161–177 ISSN 1175-5326 (print edition) http://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2017 Magnolia Press ISSN 1175-5334 (online edition) https://doi.org/10.11646/zootaxa.4358.1.7 http://zoobank.org/urn:lsid:zoobank.org:pub:84494502-9E85-49DA-8530-092AF8918D88 Pseudoliparis swirei sp. nov.: A newly-discovered hadal snailfish (Scorpaeniformes: Liparidae) from the Mariana Trench MACKENZIE E. GERRINGER1, THOMAS D. LINLEY2, ALAN J. JAMIESON2, ERICA GOETZE1 & JEFFREY C. DRAZEN1 1Dept. Of Oceanography, University of Hawaiʻi at Mānoa, HI 96822. E-mail: [email protected], [email protected], [email protected] 2School of Marine Science and Technology, Ridley Building, Newcastle University, Newcastle Upon Tyne, UK. NE1 7RU. E-mail: [email protected], [email protected] Abstract Pseudoliparis swirei sp. nov. is described from 37 individuals collected in the Mariana Trench at depths 6898–7966 m. The collection of this new species is the deepest benthic capture of a vertebrate with corroborated depth data. Here, we describe P. swirei sp. nov. and discuss aspects of its morphology, biology, distribution, and phylogenetic relationships to other hadal liparids based on analysis of three mitochondrial genes. Pseudoliparis swirei sp. nov. is almost certainly en- demic to the Mariana Trench, as other hadal liparids appear isolated to a single trench/ trench system in the Kermadec, Macquarie, South Sandwich, South Orkney, Peru-Chile, Kurile-Kamchatka and Japan trenches. The discovery of another hadal liparid species, apparently abundant at depths where other fish species are few and only found in low numbers, pro- vides further evidence for the dominance of this family among the hadal fish fauna. - 
												
												Fish Bulletin 161. California Marine Fish Landings for 1972 and Designated Common Names of Certain Marine Organisms of California
UC San Diego Fish Bulletin Title Fish Bulletin 161. California Marine Fish Landings For 1972 and Designated Common Names of Certain Marine Organisms of California Permalink https://escholarship.org/uc/item/93g734v0 Authors Pinkas, Leo Gates, Doyle E Frey, Herbert W Publication Date 1974 eScholarship.org Powered by the California Digital Library University of California STATE OF CALIFORNIA THE RESOURCES AGENCY OF CALIFORNIA DEPARTMENT OF FISH AND GAME FISH BULLETIN 161 California Marine Fish Landings For 1972 and Designated Common Names of Certain Marine Organisms of California By Leo Pinkas Marine Resources Region and By Doyle E. Gates and Herbert W. Frey > Marine Resources Region 1974 1 Figure 1. Geographical areas used to summarize California Fisheries statistics. 2 3 1. CALIFORNIA MARINE FISH LANDINGS FOR 1972 LEO PINKAS Marine Resources Region 1.1. INTRODUCTION The protection, propagation, and wise utilization of California's living marine resources (established as common property by statute, Section 1600, Fish and Game Code) is dependent upon the welding of biological, environment- al, economic, and sociological factors. Fundamental to each of these factors, as well as the entire management pro- cess, are harvest records. The California Department of Fish and Game began gathering commercial fisheries land- ing data in 1916. Commercial fish catches were first published in 1929 for the years 1926 and 1927. This report, the 32nd in the landing series, is for the calendar year 1972. It summarizes commercial fishing activities in marine as well as fresh waters and includes the catches of the sportfishing partyboat fleet. Preliminary landing data are published annually in the circular series which also enumerates certain fishery products produced from the catch. - 
												
												Metabolic Enzyme Activities of Benthic Zoarcids Off the Coast of California
METABOLIC ENZYME ACTIVITIES OF BENTHIC ZOARCIDS OFF THE COAST OF CALIFORNIA A THESIS SUBMITTED TO THE GLOBAL ENVIRONMENTAL SCIENCE UNDERGRADUATE DIVISION IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF BACHELOR OF SCIENCE IN GLOBAL ENVIRONMENTAL SCIENCE DECEMBER 2011 By Erica June Aus Thesis Advisor Jeffrey Drazen I certify that I have read this thesis and that, in my opinion, it is satisfactory in scope and quality as a thesis for the degree of Bachelor of Science in Global Environmental Science. THESIS ADVISOR _________________________________ Jeffrey Drazen Department of Oceanography ii ACKNOWLEDGEMENTS This research project would not have been possible without the support of many people. It is an honor to have worked with my advisor Dr. Jeffrey Drazen, who has provided invaluable guidance and patience throughout this project. I also want to express my gratitude to both Nicole Condon and Jason Friedman. I wouldn’t have made it this far without their help, every step of the way. Thank you to everyone in the Drazen lab, including Anela Choy, Chris Demarke, and William Misa. Jane Schoonmaker, who has been there since day one of my journey through the Global Environmental Science degree, and provided much needed encouragement and assistance. Last but not least, all of my fellow Global Environmental Science majors who have laughed, cried, and suffered with me along the way. I appreciate all of the support. This research was conducted in accordance with the University of Hawaii Institutional Animal Care and Use Committee protocols. NSF provided funding for this work through a grant to Jeffrey Drazen (OCE 0727135).