Oral Administration of Compound Probiotics Ameliorates HFD

Total Page:16

File Type:pdf, Size:1020Kb

Oral Administration of Compound Probiotics Ameliorates HFD Probiotics and Antimicrobial Proteins https://doi.org/10.1007/s12602-017-9378-3 Oral Administration of Compound Probiotics Ameliorates HFD-Induced Gut Microbe Dysbiosis and Chronic Metabolic Inflammation via the G Protein-Coupled Receptor 43 in Non-alcoholic Fatty Liver Disease Rats Yinji Liang1 & Shu Liang2 & Yupei Zhang2 & Yuanjun Deng2 & Yifang He2 & Yanning Chen2 & Chan Liu3 & Chenli Lin3 & Qinhe Yang2 # Springer Science+Business Media, LLC, part of Springer Nature 2018 Abstract The aim of this study was to investigate how the effects of compound probiotics modulate the gut microbiota, short-chain fatty acid (SCFA), body composition, serum and liver lipids, and inflammatory markers in non-alcoholic fatty liver disease (NAFLD) rats. Twenty-four male SD rats were randomly divided into 3 groups: normal control group (standard feed), high-fat diet (HFD) feeding group (83% standard feed + 10% lard oil + 1.5% cholesterol + 0.5% cholate + 5% sucrose), and compound probiotics intervention group (HFD + 0.6 g × kg−1 ×d−1 compound probiotics). The microbial population was assessed by 16S rDNA amplification and sequence analysis. Body composition, serum and liver lipids, serum inflammatory markers, colonic SCFAs, and relative proteins were assessed. The results showed that compound probiotics significantly reduced body weight, visceral and total fat mass, and the levels of hepatic TC and TG and serum TG, FFA, ALT, LPS, IL-1β, and IL-18 (P<0.05). The proportions of TM7 phylum (0.06 vs 1.57%, P<0.05) clearly increased, while that of Verrucomicrobia phylum (5.69 vs 2.61%, P<0.05) clearly decreased. Compound probiotics also increased the representation of Ruminococcus genus (0.95 vs 1.83%, P<0.05), while the proportion of Veillonella genus decreased (0.10 vs 0.03%, P<0.05). The levels of colonic SCFAs and GPR43, NLRP3, ASC, and CASPASE-1 proteins also changed significantly (P<0.05). Compound probiotics modulated gut microbiota, SCFAs, and their receptor GPR43 in NAFLD rats. These changes might inhibit lipid deposition and chronic metabolic inflammation in response to the insult of HFD. Keywords Non-alcoholic fatty liver disease . Probiotics . Gut microbiota . Inflammation . G protein-coupled receptor 43 Introduction has considered NAFLD to be a manifestation of metabolic syndrome in the liver, often associated with obesity, dyslipid- At present, non-alcoholic fatty liver disease (NAFLD) is emia, and insulin resistance [2]. According to the latest statis- among the most common liver diseases affecting the health tics, the incidence of NAFLD in adults was approximately of both adults and children worldwide [1]. Modern medicine 25.24% (N = 8,515,431) worldwide [3], and the number of cases was approximately 1 billion [4], approximately 30– Electronic supplementary material The online version of this article 40% in men and 15–20% in women [5]. The incidence of (https://doi.org/10.1007/s12602-017-9378-3) contains supplementary NAFLD in China was 15 to 30% [6], and the trend was in- material, which is available to authorized users. creasing annually. Increasing evidence suggests that NAFLD was a multisys- * Qinhe Yang tem disease. In addition to the progression of end-stage liver [email protected] disease, NAFLD is also closely related to many diseases, such 1 School of Nursing, Jinan University, No. 601 Huangpu Avenue West, as cardiovascular disease (CVD), type 2 diabetes mellitus Guangzhou, Guangdong 510632, China (T2DM), chronic kidney disease (CKD), and cancer [7]. 2 School of Traditional Chinese Medicine, Jinan University, No. 601 More than 70% of T2DM patients have been found to have Huangpu Avenue West, Guangzhou, Guangdong 510632, China NAFLD [8, 9]. A recent meta-analysis showed that the total 3 School of Basic Medicine, Jinan University, No. 601 Huangpu mortality of NAFLD increased by 57% due to NAFLD- Avenue West, Guangzhou, Guangdong 510632, China related CVD [10]. In addition, NAFLD increases the Probiotics & Antimicro. Prot. incidence and severity of CKD [11]. A comprehensive under- chain fatty acid (SCFA) production, and G protein-coupled standing of the harm to human health caused by NAFLD has receptor 43 (GPR43) in NAFLD rats. been obtained. However, the effective prevention and treat- ment of NAFLD in clinical practice remain lacking, and re- search on the pathogenesis of NAFLD is particularly urgent. Materials and Methods Recent research has led to widespread acceptance of the Bmultiple hit^ hypothesis regarding the pathogenesis Animals and Dietary Treatments of NAFLD [12]. The multiple hit factors mainly refer to the interaction of host genes, the environment (especially Twenty-four male Sprague Dawley rats (6 weeks old) were diet), and intestinal microorganisms, which could lead to obtained from the Laboratory Animal Research Center of gut microbiota dysbiosis, cause intestinal mucosa barrier Guangzhou University of Traditional Chinese Medicine dysfunction, and induce the translocation of the gut mi- (Animal License No. SCXK (Yue) 2013-0034). The basic diet crobiota and its metabolites [13, 14]. These factors inter- and high-fat diet (HFD) were provided, respectively, by the act to cause liver fat degeneration and activate the innate Animal Administration Laboratory of Jinan University and immune system, especially Toll-like receptors (TLRs) and the Center of Laboratory Animal Science of Guangdong NOD-like receptors (NLRs), inducing inflammation, cell (License No. SCXK (Yue) 2013-0002). Compound probiotics death, or progressive liver damage [12]. Professor Jeffrey were provided by Professor Heping Zhang from Inner Gordon’s team conducted a study on gut microbiota that Mongolia Agricultural University [23]. After adaptive feeding confirmed gut microbiota imbalance to be closely related for 1 week, the rats were randomly divided into three groups to metabolic diseases such as malnutrition, obesity, and with 8 rats per group, namely, the normal control group (NC diabetes [15]. However, the composition of the gut micro- group), the high-fat diet feeding group (HFD group), and the bial population may change dynamically in different en- compound probiotics intervention group (CP group). This an- vironments, nutrition conditions, or immune states. In ad- imal experiment protocol was approved by the Laboratory dition, disorders of the gut microbiota exert a profound Animal Ethics Committee of Jinan University. NC group rats impact on the host health and a variety of diseases [16]. A were fed standard feed, and the other groups were fed a HFD randomized controlled trial showed that the populations of (83% standard feed + 10% lard oil + 1.5% cholesterol + 0.5% aerobic bacteria such as Enterobacteriaceae and cholate + 5% sucrose). At the same time, each rat was, respec- Enterococcus faecalis were significantly increased in pa- tively, given distilled water or the relevant medicine by ga- tients with NASH compared with the healthy control vage. The HFD group rats were given deionized distilled wa- group, while Lactobacillus, Bifidobacteria, and other an- ter, and the CP group rats were given compound probiotics aerobic bacteria were decreased [17]. The severity of (more than 600 billion CFU/100 g) at 0.6 g × kg−1 ×d−1.The NAFLD is also closely related to the abundance of γ- compound probiotics contained 9 strains of probiotics, includ- Proteus in the intestine [18]. Despite some controversial ing 6 strains of Lactobacillus and 3 strains of Bifidobacterium results, these studies indicated that certain specific phy- combined with 15 g/100 g of the prebiotic galacto- lum, class, order, family, genus, or species populations oligosaccharide (GOS). Composition of feed used in the study may be beneficial or harmful to NAFLD patients. was shown in Supplemental Table 1–3. Body weight and food Therefore, the regulation of the intestinal ecological bal- intake were measured weekly. The rats were allowed to drink ance may be an important means of preventing and water freely and were kept in separate cages in an SPF animal treating NAFLD. The intestinal ecological balance de- laboratory with 12-h alternating periods of dark and light at pends on the stability of the intestinal epithelial mucosa, 18–22 °C for 16 weeks. the gut microbiota, and the regulation of its metabolites. Recently, some studies found that the gut microbiota, as- Gut Microbiota Sequencing Analyses sociated high concentrations of intestinal SCFAs and G protein-coupled receptors (GPCRs), played a key role in At 1–2 days before euthanasia, fresh stool samples (n =8 NAFLD [19–22], but it remained unclear how the gut rats/group) were collected in sterile tubes and stored in liquid microbiota communicated with the liver. Thus, due to nitrogen. Fecal sample DNA was extracted with QiaAmp the close relationship between the liver and gut, the ques- DNA Mini Kits (Qiagen, Valencia, CA, USA), and the bacte- tion of whether compound probiotics could regulate the rial genomic DNA was detected by gel electrophoresis. The gut microbiota and its metabolites in NAFLD is worthy of sample DNA was amplified to enrich for the bacterial 16S further study. V3–V4 rDNA region with a specific primer with a barcode Our study investigated the effects of compound probiotics [ 24]. The primer sequences were 341F: on the gut microbiota and its impact on body composition, CCTAYGGGRBGCASCAG and 806R: serum and liver lipids, serum inflammatory markers, short- GGACTACNNGGGTATCTAAT. Then, the PCR Probiotics & Antimicro. Prot. amplification product was recovered and quantified using a mass, fat volume, average CT value, and fat ratio and can QuantiFluorTM fluorometer. The purified amplification prod- obtain the CT value ratio and the fat ratio of the liver to deter- ucts were mixed in equal amounts, ligated to sequencing mine the degree of deterioration of the fatty liver [26]. adapters to construct a sequencing library, and sequenced on a HiSeq2500 system using the PE250 run mode. For taxo- Biochemical Measurements in Serum and Hepatic nomic classification, tag reads were grouped into operational Tissue taxonomic units (OTUs) at a sequence similarity level of 97%.
Recommended publications
  • Actinobacteria and the Vitamin Metabolism of Firebugs
    Actinobacteria and the Vitamin Metabolism of Firebugs - Characterizing a mutualism's specificity and functional importance - Seit 1558 Dissertation To Fulfill the Requirements for the Degree of „Doctor of Philosophy“ (PhD) Submitted to the Council of the Faculty of Biology and Pharmacy of the Friedrich Schiller University Jena by M.S. Hassan Salem Born on 16.01.1986 in Cairo, Egypt i Das Promotionsgesuch wurde eingereicht und bewilligt am: Gutachter: 1) 2) 3) Das Promotionskolloquium wurde abgelegt am: ii To Nagla and Samy, for ensuring that life’s possibilities remain endless To Aly, for sharing everything* And to Aileen, my beloved HERC2 mutant * Everything except our first Gameboy (circa 1993). For all else, I am profoundly grateful. i ii CONTENTS LIST OF PUBLICATIONS ................................................................................................... 1 CHAPTER 1: SYMBIOSIS AND THE EVOLUTION OF BIOLOGICAL NOVELTY IN INSECTS ............................................................................................................................ 3 1.1 The organism in the age of the holobiont: It, itself, they .................................................. 3 1.2 Adaptive significance of symbiosis .................................................................................. 4 1.3 Symbiont-mediated diversification ................................................................................... 5 1.4 Revisiting Darwin’s mystery of mysteries: The role of symbiosis in species formation 6 1.5 Homeostasis of symbioses
    [Show full text]
  • Microbiome of Odontogenic Abscesses
    microorganisms Article Microbiome of Odontogenic Abscesses Sebastian Böttger 1,* , Silke Zechel-Gran 2, Daniel Schmermund 1, Philipp Streckbein 1 , Jan-Falco Wilbrand 1 , Michael Knitschke 1 , Jörn Pons-Kühnemann 3, Torsten Hain 2,4, Markus Weigel 2 , Hans-Peter Howaldt 1, Eugen Domann 4,5 and Sameh Attia 1 1 Department of Oral and Maxillofacial Surgery, Justus-Liebig-University Giessen, University Hospital Giessen and Marburg, Giessen, D-35392 Giessen, Germany; [email protected] (D.S.); [email protected] (P.S.); [email protected] (J.-F.W.); [email protected] (M.K.); [email protected] (H.-P.H.); [email protected] (S.A.) 2 Institute of Medical Microbiology, Justus-Liebig-University Giessen, D-35392 Giessen, Germany; [email protected] (S.Z.-G.); [email protected] (T.H.); [email protected] (M.W.) 3 Institute of Medical Informatics, Justus-Liebig-University Giessen, D-35392 Giessen, Germany; [email protected] 4 German Center for Infection Research (DZIF), Justus-Liebig-University Giessen, Partner Site Giessen-Marburg-Langen, D-35392 Giessen, Germany; [email protected] 5 Institute of Hygiene and Environmental Medicine, Justus-Liebig-University Giessen, D-35392 Giessen, Germany * Correspondence: [email protected]; Tel.: +49-641-98546271 Abstract: Severe odontogenic abscesses are regularly caused by bacteria of the physiological oral Citation: Böttger, S.; Zechel-Gran, S.; microbiome. However, the culture of these bacteria is often prone to errors and sometimes does not Schmermund, D.; Streckbein, P.; result in any bacterial growth.
    [Show full text]
  • Novel Molecular, Structural and Evolutionary Characteristics of the Phosphoketolases from Bifidobacteria and Coriobacteriales
    RESEARCH ARTICLE Novel molecular, structural and evolutionary characteristics of the phosphoketolases from bifidobacteria and Coriobacteriales Radhey S. Gupta*, Anish Nanda, Bijendra Khadka Department of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Ontario, Canada * [email protected] a1111111111 a1111111111 a1111111111 Abstract a1111111111 Members from the order Bifidobacteriales, which include many species exhibiting health a1111111111 promoting effects, differ from all other organisms in using a unique pathway for carbohydrate metabolism, known as the ªbifid shuntº, which utilizes the enzyme phosphoketolase (PK) to carry out the phosphorolysis of both fructose-6-phosphate (F6P) and xylulose-5-phosphate (X5P). In contrast to bifidobacteria, the PKs found in other organisms (referred to XPK) are OPEN ACCESS able to metabolize primarily X5P and show very little activity towards F6P. Presently, very lit- Citation: Gupta RS, Nanda A, Khadka B (2017) tle is known about the molecular or biochemical basis of the differences in the two forms of Novel molecular, structural and evolutionary PKs. Comparative analyses of PK sequences from different organisms reported here have characteristics of the phosphoketolases from bifidobacteria and Coriobacteriales. PLoS ONE 12 identified multiple high-specific sequence features in the forms of conserved signature (2): e0172176. doi:10.1371/journal.pone.0172176 inserts and deletions (CSIs) in the PK sequences that clearly distinguish the X5P/F6P phos- Editor: Eugene A. Permyakov, Russian Academy of phoketolases (XFPK) of bifidobacteria from the XPK homologs found in most other organ- Medical Sciences, RUSSIAN FEDERATION isms. Interestingly, most of the molecular signatures that are specific for the XFPK from Received: December 12, 2016 bifidobacteria are also shared by the PK homologs from the Coriobacteriales order of Acti- nobacteria.
    [Show full text]
  • Impact of the Interplay Between Bile Acids, Lipids, Intestinal Coriobacteriaceae and Diet on Host Metabolism
    Technische Universität München ZIEL – Zentralinstitut für Ernährungs- und Lebensmittelforschung Nachwuchsgruppe Intestinales Mikrobiom Impact of the interplay between bile acids, lipids, intestinal Coriobacteriaceae and diet on host metabolism Sarah Just Vollständiger Abdruck der von der Fakultät Wissenschaftszentrum Weihenstephan für Ernährung, Landnutzung und Umwelt der Technischen Universität München zur Erlangung des akademischen Grades eines Doktors der Naturwissenschaften (Dr. rer. nat.) genehmigten Dissertation. Vorsitzender: Prof. Dr. rer. nat. Siegfried Scherer Prüfer der Dissertation: 1. Prof. Dr. rer. nat. Dirk Haller 2. Prof. Dr. rer. nat. Martin Klingenspor Die Dissertation wurde am 14.02.2017 bei der Technischen Universität München eingereicht und durch die Fakultät Wissenschaftszentrum Weihenstephan für Ernährung, Landnutzung und Umwelt am 12.06.2017 angenommen. Abstract Abstract The gut microbiome is a highly diverse ecosystem which influences host metabolism via for instance via conversion of bile acids and production of short chain fatty acids. Changes in gut microbiota profiles are associated with metabolic diseases such as obesity, type-2 diabetes, and non-alcoholic fatty liver disease. However, beyond alteration of the ecosystem structure, only a handful of specific bacterial species were shown to influence host metabolism and knowledge about molecular mechanisms by which gut bacteria regulate host metabolism are scant. The family Coriobacteriaceae (phylum Actinobacteria) comprises dominant members of the human gut microbiome and can metabolize cholesterol-derived substrates such as bile acids. Furthermore, their occurrence has been associated with alterations of lipid and cholesterol metabolism. However, consequences for the host are unknown. Hence, the aim of the present study was to characterize the impact of Coriobacteriaceae on lipid, cholesterol, and bile acid metabolism in vivo.
    [Show full text]
  • Quantification of Slackia and Eggerthella Spp. in Human Feces
    fmicb-07-00658 May 5, 2016 Time: 16:44 # 1 View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Frontiers - Publisher Connector ORIGINAL RESEARCH published: 09 May 2016 doi: 10.3389/fmicb.2016.00658 Quantification of Slackia and Eggerthella spp. in Human Feces and Adhesion of Representatives Strains to Caco-2 Cells Gyu-Sung Cho1, Felix Ritzmann2, Marie Eckstein2, Melanie Huch2, Karlis Briviba3, Diana Behsnilian4, Horst Neve1 and Charles M. A. P. Franz1* 1 Department of Microbiology and Biotechnology, Max Rubner-Institut, Federal Research Institute of Nutrition and Food, Kiel, Germany, 2 Department of Safety and Quality of Fruit and Vegetables, Max Rubner-Institut, Federal Research Institute of Nutrition and Food, Karlsruhe, Germany, 3 Department of Physiology and Biochemistry of Nutrition, Max Rubner-Institut, Edited by: Federal Research Institute of Nutrition and Food, Karlsruhe, Germany, 4 Department of Food Technology and Bioprocess Andrea Gomez-Zavaglia, Engineering, Max Rubner-Institut, Federal Research Institute of Nutrition and Food, Karlsruhe, Germany Center for Research and Development in Food Cryotechnology – Consejo Nacional Eggerthella and Slackia spp. are gut associated bacteria that have been suggested to De Investigaciones Científicas Y play roles in host lipid and xenobiotic metabolism. A quantitative PCR method for the Técnicas, Argentina selective enumeration of bacteria belonging to either the genus Eggerthella or Slackia Reviewed by: was developed in order to establish the numbers of these bacteria occurring in human Paula Carasi, Universidad Nacional de La Plata, feces. The primers developed for selective amplification of these genera were tested first Argentina in conventional PCR to test for their specificity.
    [Show full text]
  • Sequence Analysis of Percent G+ C Fraction Libraries of Human Faecal
    BMC Microbiology BioMed Central Research article Open Access Sequence analysis of percent G+C fraction libraries of human faecal bacterial DNA reveals a high number of Actinobacteria Lotta Krogius-Kurikka1, Anna Kassinen1, Lars Paulin2, Jukka Corander3, Harri Mäkivuokko4,6, Jarno Tuimala5 and Airi Palva*1 Address: 1Department of Basic Veterinary Sciences, Faculty of Veterinary Medicine, PO Box 66, FI-00014 University of Helsinki, Finland, 2DNA Sequencing Laboratory, Institute of Biotechnology, University of Helsinki, Finland, 3Department of Mathematics, Åbo Akademi University, Finland, 4Danisco Innovation, Kantvik, Finland, 5CSC – Scientific Computing Ltd, Espoo, Finland and 6The Finnish Red Cross, Blood Service, Helsinki, Finland Email: Lotta Krogius-Kurikka - [email protected]; Anna Kassinen - [email protected]; Lars Paulin - [email protected]; Jukka Corander - [email protected]; Harri Mäkivuokko - [email protected]; Jarno Tuimala - [email protected]; Airi Palva* - [email protected] * Corresponding author Published: 8 April 2009 Received: 16 December 2008 Accepted: 8 April 2009 BMC Microbiology 2009, 9:68 doi:10.1186/1471-2180-9-68 This article is available from: http://www.biomedcentral.com/1471-2180/9/68 © 2009 Krogius-Kurikka et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: The human gastrointestinal (GI) tract microbiota is characterised by an abundance of uncultured bacteria most often assigned in phyla Firmicutes and Bacteroidetes. Diversity of this microbiota, even though approached with culture independent techniques in several studies, still requires more elucidation.
    [Show full text]
  • Genomic and Phenotypic Description of the Newly Isolated Human Species Collinsella Bouchesdurhonensis Sp Nov
    Genomic and phenotypic description of the newly isolated human species Collinsella bouchesdurhonensis sp nov. Melhem Bilen, Mamadou Beye, Maxime Descartes Mbogning Fonkou, Saber Khelaifia, Frederic Cadoret, Nicholas Armstrong, Thi Tien Nguyen, Jeremy Delerce, Ziad Daoud, Didier Raoul, et al. To cite this version: Melhem Bilen, Mamadou Beye, Maxime Descartes Mbogning Fonkou, Saber Khelaifia, Frederic Cadoret, et al.. Genomic and phenotypic description of the newly isolated human species Collinsella bouchesdurhonensis sp nov.. MicrobiologyOpen, Wiley, 2018, 7 (5), pp.e00580. 10.1002/mbo3.580. hal-02004009 HAL Id: hal-02004009 https://hal.archives-ouvertes.fr/hal-02004009 Submitted on 10 Dec 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License Received: 8 September 2017 | Revised: 15 November 2017 | Accepted: 21 November 2017 DOI: 10.1002/mbo3.580 ORIGINAL RESEARCH Genomic and phenotypic description of the newly isolated human species Collinsella bouchesdurhonensis sp. nov.
    [Show full text]
  • Enorma Massiliensis Gen. Nov., Sp. Nov
    Standards in Genomic Sciences (2013) 8:290-305 DOI:10.4056/sigs.3426906 Non contiguous-finished genome sequence and description of Enorma massiliensis gen. nov., sp. nov., a new member of the Family Coriobacteriaceae Ajay Kumar Mishra1*, Perrine Hugon1*, Jean-Christophe Lagier1,Thi-Tien Nguyen1, Carine Couderc1, Didier Raoult1 and Pierre-Edouard Fournier1¶ 1Aix-Marseille Université, URMITE, Marseille, France Corresponding author: Pierre-Edouard Fournier ([email protected]) *These two authors contributed equally to this work. Keywords: Enorma massiliensis, genome, culturomics, taxono-genomics. Enorma massiliensis strain phIT is the type strain of E. massiliensis gen. nov., sp. nov., the type species of a new genus within the family Coriobacteriaceae, Enorma gen. nov. This strain, whose genome is described here, was isolated from the fecal flora of a 26-year-old woman suffering from morbid obe- sity. E. massiliensis strain phIT is a Gram-positive, obligately anaerobic bacillus. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,280,571 bp long genome (1 chromosome but no plasmid) exhibits a G+C content of 62.0% and contains 1,901 protein-coding and 51 RNA genes, including 3 rRNA genes. Introduction Enorma massiliensis strain phIT (= CSUR P183 = and may not be of any routine use in clinical la- DSMZ 25476) is the type strain of E. massiliensis boratories. As a consequence, we recently pro- gen. nov., sp. nov, which, in turn, is the type spe- posed a polyphasic approach [6-17] to describe cies of the genus Enorma gen. nov. This bacterium new bacterial taxa, in which the complete genome was isolated from the stool of a 26-year-old wom- sequence and MALDI-TOF of the protein spectrum an suffering from morbid obesity as part of a would be used together with their main phenotyp- culturomics study aimed at individually cultivat- ic characteristics (habitat, Gram staining, culture ing all of the bacterial species within human feces and metabolic characteristics and, when applica- [1].
    [Show full text]
  • Composition and Function of the Microbiotas in the Different Parts Of
    EUROPEAN JOURNAL OF ENTOMOLOGYENTOMOLOGY ISSN (online): 1802-8829 Eur. J. Entomol. 117: 352–371, 2020 http://www.eje.cz doi: 10.14411/eje.2020.040 ORIGINAL ARTICLE Composition and function of the microbiotas in the different parts of the midgut of Pyrrhocoris sibiricus (Hemiptera: Pyrrhocoridae) revealed using high-throughput sequencing of 16S rRNA RONGRONG LI 1, *, MIN LI 1 , *, JIANG YAN 1 and HUFANG ZHANG 2, ** 1 Taiyuan Normal University, Jinzhong, Shanxi 030619, China; e-mails: [email protected], [email protected], [email protected] 2 Xinzhou Teachers University, Xinzhou, Shanxi 034000, China; e-mail: [email protected] Key words. Pyrrhocoridae, Pyrrhocoris sibiricus, digestion, gut microbiota, community structure, functional profi ling, next- generation sequencing, 16S rRNA gene Abstract. In pyrrhocorids, digestion of food occurs mainly in the midgut, which is divided into four parts (M1–M4), and takes be- tween three and four days. Food is retained in M1 for about 5 h and passes quickly through M4. However, food is retained in M2 and M3 much longer, about 70 to 90 h. The different stages in digestion may be infl uenced by different microbial populations in the different parts of the midgut. In the present study, the microbiota in the four parts of the midgut of Pyrrhocoris sibiricus were analysed in detail using high-throughput sequencing of the 16S rRNA V3–V4 region. The most abundant bacteria in M3 were Actinobacteria (Coriobacteriaceae) whereas it was Proteobacteria (gammaproteobacteria) in M1, M2 and M4. Actinobacteria was the second most abundant bacterial group in M2. According to the PCA analysis, M2 and M3 have the most similar bacterial com- munities.
    [Show full text]
  • Direct Link to Fulltext
    IDENTIFICATION OF MICROBIAL COMMUNITY COLONIZING THE GUT OF DYSDERCUS CINGULATUS FABRICIUS (HEMIPTERA: PYRRHOCORIDAE) Shama Uzmi1, C. Shruthi Sureshan1,3, Sewali Ghosh2 & S. K. M. Habeeb1,3* Address(es): 1Department of Bioinformatics, School of Bioengineering, SRM Institute of Science and Technology, Kattankulathur Campus, Chennai – 603203. 2Department of Advance Zoology and Biotechnology, Guru Nanak College, Velachery, Chennai – 600042. 3Entomoinformatics Lab, Department of Genetic Engineering, School of Bioengineering, SRM Institute of Science and Technology, Kattankulathur Campus, Chennai – 603203. *Corresponding author: [email protected] , [email protected] doi: 10.15414/jmbfs.2019/20.9.3.496-501 ARTICLE INFO ABSTRACT Received 18. 10. 2018 Red cotton stainer Dysdercus cingulatus sucks the sap of cotton plant and hence considered as one of the serious pests of cotton across Revised 10. 5. 2019 the globe. Gut microbial community of this pest was studied using 16srRNA variable regions (V3 & V4) using Illumina MiSeq Accepted 12. 5. 2019 technology. Totally 11, 0,797 reads were obtained which were processed using QIIME pipeline. This study resulted in the identification Published 1. 12. 2019 of gut microbiota of D. cingulatus categorized into 34 different phyla, 88 classes, 132 classes, 206 families and 336 genera. Phylum level taxonomic classification identifies bacteria predominantly from Proteobacteria (46.7%), Actinobacteria (25.7%) and Firmicutes (18%). Species from the genus Coriobacterium, Bifidobacterium, Corynebacterium, Klebsiella & Pseudomonas are most abundant in Regular article the gut of D. cingulatus. Insights into the gut can help us to understand the role of microorganism which dismantles the plant. Keywords: Cotton Pest, Dysdercus cingulatus, 16s rRNA, Gut Microbiome, Bioinformatics, NGS MiSeq INTRODUCTION Dively, 2014).
    [Show full text]
  • Geographical and Ecological Stability of the Symbiotic Midgut Microbiota in European Firebugs, Pyrrhocoris Apterus (Hemiptera, P
    Molecular Ecology (2012) 21, 6134–6151 doi: 10.1111/mec.12027 Geographical and ecological stability of the symbiotic mid-gut microbiota in European firebugs, Pyrrhocoris apterus (Hemiptera, Pyrrhocoridae) SAILENDHARAN SUDAKARAN,* HASSAN SALEM,* CHRISTIAN KOST†‡ and MARTIN KALTENPOTH* *Max Planck Research Group Insect Symbiosis, Max Planck Institute for Chemical Ecology, Hans-Knoell-Str. 8, 07745 Jena, Germany, †Experimental Ecology and Evolution Research Group, Max Planck Institute for Chemical Ecology, Hans-Knoell-Str. 8, 07745 Jena, Germany, ‡Institute of Microbiology, Friedrich Schiller University, Philosophenweg 12, 07743 Jena, Germany Abstract Symbiotic bacteria often play an essential nutritional role for insects, thereby allowing them to exploit novel food sources and expand into otherwise inaccessible ecological niches. Although many insects are inhabited by complex microbial communities, most studies on insect mutualists so far have focused on single endosymbionts and their interactions with the host. Here, we provide a comprehensive characterization of the gut microbiota of the red firebug (Pyrrhocoris apterus, Hemiptera, Pyrrhocoridae), a model organism for physiological and endocrinological research. A combination of several culture-independent techniques (454 pyrosequencing, quantitative PCR and cloning/sequencing) revealed a diverse community of likely transient bacterial taxa in the mid-gut regions M1, M2 and M4. However, the completely anoxic M3 region har- boured a distinct microbiota consisting of facultative and obligate anaerobes including Actinobacteria (Coriobacterium glomerans and Gordonibacter sp.), Firmicutes (Clostri- dium sp. and Lactococcus lactis) and Proteobacteria (Klebsiella sp. and a previously undescribed Rickettsiales bacterium). Characterization of the M3 microbiota in differ- ent life stages of P. apterus indicated that the symbiotic bacterial community is verti- cally transmitted and becomes well defined between the second and third nymphal instar, which coincides with the initiation of feeding.
    [Show full text]
  • Impact of the Interplay Between Bile Acids, Lipids, Intestinal Coriobacteriaceae and Diet on Host Metabolism
    Technische Universität München ZIEL – Zentralinstitut für Ernährungs- und Lebensmittelforschung Nachwuchsgruppe Intestinales Mikrobiom Impact of the interplay between bile acids, lipids, intestinal Coriobacteriaceae and diet on host metabolism Sarah Just Vollständiger Abdruck der von der Fakultät Wissenschaftszentrum Weihenstephan für Ernährung, Landnutzung und Umwelt der Technischen Universität München zur Erlangung des akademischen Grades eines Doktors der Naturwissenschaften (Dr. rer. nat.) genehmigten Dissertation. Vorsitzender: Prof. Dr. rer. nat. Siegfried Scherer Prüfer der Dissertation: 1. Prof. Dr. rer. nat. Dirk Haller 2. Prof. Dr. rer. nat. Martin Klingenspor Die Dissertation wurde am 14.02.2017 bei der Technischen Universität München eingereicht und durch die Fakultät Wissenschaftszentrum Weihenstephan für Ernährung, Landnutzung und Umwelt am 12.06.2017 angenommen. Abstract Abstract The gut microbiome is a highly diverse ecosystem which influences host metabolism via for instance via conversion of bile acids and production of short chain fatty acids. Changes in gut microbiota profiles are associated with metabolic diseases such as obesity, type-2 diabetes, and non-alcoholic fatty liver disease. However, beyond alteration of the ecosystem structure, only a handful of specific bacterial species were shown to influence host metabolism and knowledge about molecular mechanisms by which gut bacteria regulate host metabolism are scant. The family Coriobacteriaceae (phylum Actinobacteria) comprises dominant members of the human gut microbiome and can metabolize cholesterol-derived substrates such as bile acids. Furthermore, their occurrence has been associated with alterations of lipid and cholesterol metabolism. However, consequences for the host are unknown. Hence, the aim of the present study was to characterize the impact of Coriobacteriaceae on lipid, cholesterol, and bile acid metabolism in vivo.
    [Show full text]