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Research Article Jmb J. Microbiol. Biotechnol. (2013), 23(11), 1–7 http://dx.doi.org/10.4014/jmb.1404.04021 Research Article jmb Table S1. All GenBank (and JGI) sequences used in this study, their database identification, and corrected species information. GenBank Numbers Species Group Original ID (including JGI sequence) ITS B. adusta B. adusta Bjerkandera adusta JGI, AB096737, AB567717, AB592333, AB733118, AB733157, AF455410, AF455440, AF455468, AF455521, AY319191, AY354210, AY618221, AY781249, AY787666, AY805605, AY805628, EF441742, EU918694, FJ228211, FJ608590, FJ810147, FJ850965, FJ903311, FN995241, GU062301, GU067733, GU731546, HE774483, HQ327995, HQ331068, HQ331091, HQ916334, JF340266, JF439464, JN182863, JN198491, JQ697552, JX049389, JX082339, JX424327, JX946675, JX946676, KC176308, KC176310, KC176311, KC176312, KC176315, KC176317, KC176322, KC176323, KC176332, KC176334, KC176335, KC176339, KC176354, KC460894, KC484654, KC768070, KC831590, KF313125, KF381079, KF475891, KF562014, KF562019, KJ093490, KJ140569 Bjerkandera adustus AY089741 Bjerkandera adjusta AJ006672 B. fumosa Bjerkandera fumosa JX891534 Bjerkandera sp. Bjerkandera sp. AB638337, AM981215, AY633927, DQ060095, DQ060096, EU162066, HM595572, HQ637322, KC834790, KF208520, KF802455 Uncultured Bjerkandera FJ824611 R. solani Rhizoctonia solani isolate AF455419, AJ276054, KF758399 Rhizoctonia sp. DQ117961, FJ853489 Thanatephorus cucumeris AJ000198, EU326212, FJ791155, FR670341, JN104544 Thanatephorus cucumeris isolate AF455435, AF455438, AF455445, AF455459, AF455461, AF455463, DQ426512, DQ426519, DQ426529, EF155506, FJ426396, FJ441020, GU480955, KJ093500, FJ467364, FJ467377, GQ996576, KC460872, KF381087, KF990139 Other spp. Ceratobasidium stevensii AJ427405 Entrophospora sp. AY035664 Ganoderma lobatum strain JQ520165 Trichaptum abietinum U63474 Trichaptum abietinum strain FJ768676 Unidentified Agaricomycetes sp. JF288553, KF159979 Agaricomycetes strain GQ221186, GQ221187 Basidiomycete isolate AF455417, AF455421, AF455454 Basidiomycete sp. AM084821, AM084841, AM930994, AM981213, AM981217, DQ355927, AB075608, AB075609, AB075610, AJ279464, AJ279465, AJ279471, GQ922566, HM589360, KF638514, KF638527 Fungal endophyte sp. FM200566, HM537062 Fungal sp. AM231371, FJ609288, FJ609294, FJ609296, GQ906943, HQ834829, JF330182, JQ070429, JQ070430, JQ919920, JQ919921, JQ919922, JQ919923, KF212216 Fungal sp. clone KF212215 Polyporales sp. JQ312134, JQ312173 Uncultured basidiomycete AM901877, AM901992 Uncultured fungus clone FJ213533, FJ213541, FJ820495, GQ999352, GQ999360, GU559103, HM164585, JF721422, JF721423, JF721425, KF780611 The name in the group column refers to the name in Figs. 2B and 2C. September 2013 ⎪ Vol. 23⎪ No. 9 2 Name et al. Table S1. Continued. GenBank Numbers Species Group Original ID (including JGI sequence) B. fumosa B. adusta Bjerkandera adusta AB733156, DQ060097, JN182883, KF681360 B. fumosa Bjerkandera fumosa AJ006673, FJ903376, KJ140583 Bjerkandera sp. Bjerkandera sp. JQ388260 Unidentified Uncultured fungus FJ820598 Other Others Bjerkandera adusta JN628105, JN861758 Bjerkandera sp. HQ596906, KF578081, KJ174457 Outgroup Phanerochaete chrysosporium AY219344 LSU B. adusta B. adusta Bjerkandera adusta JGI, AB096738, AB733334, AY858352, FN298244, FN996994, GQ470629, JF416673, JQ388758, KC176308, KC176309, KC176310, KC176311, KC176312, KC176315, KC176317, KC176322, KC176323, KC176332, KC176334, KC176335, KC176339, KC176354 Bjerkandera sp. Bjerkandera sp. HM595615 Uncultured Bjerkandera JX132617 A. malicola Antrodia malicola AY333836 Unidentified Fungal sp. JQ249221 B. fumosa B. adusta Bjerkandera adusta AB733333, AF287848 Other Others Bjerkandera adusta AJ406530 Bjerkandera sp. KF578081 Outgroup Phanerochaete chrysosporium JN874484 Fig. S1. Unrooted maximum likelihood analyses of the four datasets. Clusters for Bjerkandera adusta, B. fumosa, and misidentified species are noted with the dotted lines. J. Microbiol. Biotechnol. Title 3 Fig. S2. Neighbor-joining analysis of the ITS sequences labeled as “Bjerkandera” in GenBank. Numbers at nodes indicate support values from the bootstrap analysis. September 2013 ⎪ Vol. 23⎪ No. 9 4 Name et al. Fig. S3. Neighbor-joining analysis of the ITS sequences labeled as “Bjerkandera”, along with highly similar sequences in GenBank identified using BLAST. Numbers at nodes indicate support values from the bootstrap analysis. J. Microbiol. Biotechnol. Title 5 Fig. S4. Neighbor-joining analysis of the LSU sequences labeled as “Bjerkandera” in GenBank. Numbers at nodes indicate support values from the bootstrap analysis. September 2013 ⎪ Vol. 23⎪ No. 9 6 Name et al. Fig. S5. Neighbor-joining analysis of the LSU sequences labeled as “Bjerkandera”, along with highly similar sequences in GenBank identified using BLAST. Numbers at nodes indicate support values from the bootstrap analysis. J. Microbiol. Biotechnol. Title 7 Fig. S6. Neighbor-joining tree identifying Bjerkandera adusta sequences in GenBank incorrectly labeled as Thanatephorous cucumeris or anamorphic name Rhizoctonia solani. Select ITS sequences of T. cucumeris and Bjerkandera were compared. Bootstrap values higher than 85 are displayed. Names in red font are B. adusta incorrectly labeled as T. cucumeris or R. solani in GenBank. September 2013 ⎪ Vol. 23⎪ No. 9.
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