Aegis Boa (Polyporales, Basidiomycota) a New Neotropical Genus and Species Based on Morphological Data and Phylogenetic Evidences
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Why Mushrooms Have Evolved to Be So Promiscuous: Insights from Evolutionary and Ecological Patterns
fungal biology reviews 29 (2015) 167e178 journal homepage: www.elsevier.com/locate/fbr Review Why mushrooms have evolved to be so promiscuous: Insights from evolutionary and ecological patterns Timothy Y. JAMES* Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109, USA article info abstract Article history: Agaricomycetes, the mushrooms, are considered to have a promiscuous mating system, Received 27 May 2015 because most populations have a large number of mating types. This diversity of mating Received in revised form types ensures a high outcrossing efficiency, the probability of encountering a compatible 17 October 2015 mate when mating at random, because nearly every homokaryotic genotype is compatible Accepted 23 October 2015 with every other. Here I summarize the data from mating type surveys and genetic analysis of mating type loci and ask what evolutionary and ecological factors have promoted pro- Keywords: miscuity. Outcrossing efficiency is equally high in both bipolar and tetrapolar species Genomic conflict with a median value of 0.967 in Agaricomycetes. The sessile nature of the homokaryotic Homeodomain mycelium coupled with frequent long distance dispersal could account for selection favor- Outbreeding potential ing a high outcrossing efficiency as opportunities for choosing mates may be minimal. Pheromone receptor Consistent with a role of mating type in mediating cytoplasmic-nuclear genomic conflict, Agaricomycetes have evolved away from a haploid yeast phase towards hyphal fusions that display reciprocal nuclear migration after mating rather than cytoplasmic fusion. Importantly, the evolution of this mating behavior is precisely timed with the onset of diversification of mating type alleles at the pheromone/receptor mating type loci that are known to control reciprocal nuclear migration during mating. -
Identification of Three Wood Decay Fungi in Yeoninsan Provincial Park, Korea
Journal240 of Species Research 7(3):240-247, 2018JOURNAL OF SPECIES RESEARCH Vol. 7, No. 3 Identification of three wood decay fungi in Yeoninsan Provincial Park, Korea Sun Lul Kwon1, Seokyoon Jang1, Min-Ji Kim2, Kyeongwon Kim1, Chul-Whan Kim1, Yeongseon Jang3, Young Woon Lim2, Changmu Kim4 and Jae-Jin Kim1,* 1Division of Environmental Science & Ecological Engineering, College of Life Science & Biotechnology, Korea University, Seoul 02841, Republic of Korea 2School of Biological Sciences, Seoul National University, Seoul 08826, Republic of Korea 3Division of Wood Chemistry and Microbiology, National Institute of Forest Science, Seoul 02455, Republic of Korea 4Microorganism Resources Division, National Institute of Biological Resources, Incheon 22689, Republic of Korea *Correspondent: [email protected] Though several wood decay fungi have been reported in the world-wide, only about 600 wood decay fungi have been reported in Korea to date. Thus, the objective of this study was to secure resources for the wood decay fungi in Korea. We investigated wood decay fungi in Yeoninsan Provincial Park, Korea, and the collected specimens were identified based on ITS sequence analysis. Two species were unrecorded species in Korea: Postia hirsuta (Polyporales, Basidiomycota) and Hyphodontia reticulata (Hymenochaetales, Basidiomycota). Another species was previously reported without detailed description: Ceriporia alachuana (Polyporales, Basidiomycota). Here, we provided additional detailed microscopic features and phylogenetic analysis of these species. Keywords: Basidiomycota, ITS, morphology, phylogeny, taxonomy Ⓒ 2018 National Institute of Biological Resources DOI:10.12651/JSR.2018.7.3.240 INTRODUCTION ITS show low species resolution for some fungi (Hong et al., 2015), it is suitable for most wood decay fungi (Jang Wood decay fungi play a significant role in forest eco- et al., 2016b). -
The Use of Algae and Fungi for Removal of Pharmaceuticals by Bioremediation and Biosorption Processes: a Review
Review The Use of Algae and Fungi for Removal of Pharmaceuticals by Bioremediation and Biosorption Processes: A Review Andreia Silva, Cristina Delerue-Matos, Sónia A. Figueiredo and Olga M. Freitas * REQUIMTE/LAQV, Instituto Superior de Engenharia do Porto, Rua Dr. António Bernardino de Almeida 431, 4200-072 Porto, Portugal * Correspondence: [email protected] Received: 3 July 2019; Accepted: 25 July 2019; Published: 27 July 2019 Abstract: The occurrence and fate of pharmaceuticals in the aquatic environment is recognized as one of the emerging issues in environmental chemistry. Conventional wastewater treatment plants (WWTPs) are not designed to remove pharmaceuticals (and their metabolites) from domestic wastewaters. The treatability of pharmaceutical compounds in WWTPs varies considerably depending on the type of compound since their biodegradability can differ significantly. As a consequence, they may reach the aquatic environment, directly or by leaching of the sludge produced by these facilities. Currently, the technologies under research for the removal of pharmaceuticals, namely membrane technologies and advanced oxidation processes, have high operation costs related to energy and chemical consumption. When chemical reactions are involved, other aspects to consider include the formation of harmful reaction by-products and the management of the toxic sludge produced. Research is needed in order to develop economic and sustainable treatment processes, such as bioremediation and biosorption. The use of low-cost materials, such as biological matrices (e.g., algae and fungi), has advantages such as low capital investment, easy operation, low operation costs, and the non-formation of degradation by-products. An extensive review of existing research on this subject is presented. -
Oxalic Acid Degradation by a Novel Fungal Oxalate Oxidase from Abortiporus Biennis Marcin Grąz1*, Kamila Rachwał2, Radosław Zan2 and Anna Jarosz-Wilkołazka1
Vol. 63, No 3/2016 595–600 http://dx.doi.org/10.18388/abp.2016_1282 Regular paper Oxalic acid degradation by a novel fungal oxalate oxidase from Abortiporus biennis Marcin Grąz1*, Kamila Rachwał2, Radosław Zan2 and Anna Jarosz-Wilkołazka1 1Department of Biochemistry, Maria Curie-Skłodowska University, Lublin, Poland; 2Department of Genetics and Microbiology, Maria Curie-Skłodowska University, Lublin, Poland Oxalate oxidase was identified in mycelial extracts of a to formic acid and carbon dioxide (Mäkelä et al., 2002). basidiomycete Abortiporus biennis strain. Intracellular The degradation of oxalate via action of oxalate oxidase enzyme activity was detected only after prior lowering (EC 1.2.3.4), described in our study, is atypical for fun- of the pH value of the fungal cultures by using oxalic or gi and was found predominantly in higher plants. The hydrochloric acids. This enzyme was purified using size best characterised oxalate oxidase originates from cereal exclusion chromatography (Sephadex G-25) and ion-ex- plants (Dunwell, 2000). Currently, only three oxalate oxi- change chromatography (DEAE-Sepharose). This enzyme dases of basidiomycete fungi have been described - an exhibited optimum activity at pH 2 when incubated at enzyme from Tilletia contraversa (Vaisey et al., 1961), the 40°C, and the optimum temperature was established at best characterised so far enzyme from Ceriporiopsis subver- 60°C. Among the tested organic acids, this enzyme ex- mispora (Aguilar et al., 1999), and an enzyme produced by hibited specificity only towards oxalic acid. Molecular Abortiporus biennis (Grąz et al., 2009). The enzyme from mass was calculated as 58 kDa. The values of Km for oxa- C. -
Wood Decay by Inonotus Rickii and Bjerkandera Adusta: a Micro- and Ultra-Structural Approach
IAWARobles Journal et al.35 – (1), Wood 2014: decay 51–60 51 WOOD DECAY BY INONOTUS RICKII AND BJERKANDERA ADUSTA: A MICRO- AND ULTRA-STRUCTURAL APPROACH Carolina Analía Robles1,*, María Agueda Castro2 and Silvia Edith Lopez1 1PROPLAME-PRHIDEB-CONICET & 2Laboratorio de Anatomía Vegetal Aplicada, Departamento de Biodiversidad y Biología Experimental, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, PB II, 4to piso, CP 1428EHA Ciudad Autónoma de Buenos Aires, Argentina *Corresponding author; e-mail: [email protected] ABSTRACT Bjerkandera adusta (Willd.) P. Karst. and Inonotus rickii (Pat.) D.A. Reid. are important xylophagous fungi affecting street trees in Buenos Aires City, Ar- gentina. The objective of this paper is to describe the decay patterns produced by these species in London plane wood (Platanus acerifolia (Ait.) Willd.), which is one of the most abundant tree species in the city, through light microscopy (LM), scanning electron microscopy (SEM) and transmission electron microscopy (TEM). A better knowledge of the decay patterns of these fungi at early stages would provide useful information for optimizing tree management programs. Microscopic observations showed that B. adusta, having caused an important loss of dry weight, showed more extensive degradation of wood after three months than I. rickii, affecting mainly fiber walls with potential consequences in tree strength and stiffness. Inonotus rickii, on the other hand, selectively af- fected vessel walls and middle lamellae between fibers. Rays remained virtually unaltered in all decayed wood. Keywords: Wood-rotting fungi, white rot, delignification, Platanus acerifolia. INTRODUCTION White-rot fungi remove lignin, cellulose and hemicelluloses from wood. -
Climacodon Pulcherrimus a Badly Known Tropical Species, Present in Europe
Cryptogamie,Mycologie, 2007, 28 (1): 3-11 © 2007 Adac. Tous droits réservés Climacodon pulcherrimus a badly known tropical species, present in Europe Gabriel MORENOa*, María Natividad BLANCOa , Ibai OLARIAGAb &Julia CHECAa a Dpto. Biología Vegetal, Fac. Biología. Univ. de Alcalá, E-28871,Alcalá de Henares, Madrid. e-mail: [email protected] b Dpto. Biología Vegetal y Ecología (Botánica). Fac. Ciencias y Tecnología. Campus de Leioa. Univ. del País Vasco. Apartado 644. E-48080 Bilbao. Abstract – Climacodon pulcherrimus,apolymorphous species with a large distribution and habitat, is described macro- and microscopically. Its uncertain taxonomic position has led to the description of many synonymous species and placement in different genera. The type species of Hydnum pulcherrimum Berk. &M.A. Curtis is examined for the first time and it is compared with other collections from Malay Peninsula, Pakistan, USA and Spain. The study of Spanish collections enlarges the distribution to the South of Europe. Basidiomycota / Meruliaceae / Climacodon / Donkia / Hydnum / systematics / chorology / taxonomy INTRODUCTION In the last four years, we have collected some basidiomata of a saprophyte fungus with a basidioma of medium size, normally dimidiate with trametoid appearance and hydnoid hymenophore. Microscopically it is characterized by the presence of double or multiple clamp connections, ellipsoid basidiospores and absence of cystidia. Finally, we could determine it, with some difficulties, as a member of the genus Climacodon P. Karst., belonging to the family Meruliaceae P. Karst., order Polyporales Gäum. (Kirk et al., 2001). This genus includes species with conspicuous cystidia and hyphae with single clamp connections, with the only exception of C. pulcherrimus (Berk. -
Three Species of Wood-Decaying Fungi in <I>Polyporales</I> New to China
MYCOTAXON ISSN (print) 0093-4666 (online) 2154-8889 Mycotaxon, Ltd. ©2017 January–March 2017—Volume 132, pp. 29–42 http://dx.doi.org/10.5248/132.29 Three species of wood-decaying fungi in Polyporales new to China Chang-lin Zhaoa, Shi-liang Liua, Guang-juan Ren, Xiao-hong Ji & Shuanghui He* Institute of Microbiology, Beijing Forestry University, No. 35 Qinghuadong Road, Haidian District, Beijing 100083, P.R. China * Correspondence to: [email protected] Abstract—Three wood-decaying fungi, Ceriporiopsis lagerheimii, Sebipora aquosa, and Tyromyces xuchilensis, are newly recorded in China. The identifications were based on morphological and molecular evidence. The phylogenetic tree inferred from ITS+nLSU sequences of 49 species of Polyporales nests C. lagerheimii within the phlebioid clade, S. aquosa within the gelatoporia clade, and T. xuchilensis within the residual polyporoid clade. The three species are described and illustrated based on Chinese material. Key words—Basidiomycota, polypore, taxonomy, white rot fungus Introduction Wood-decaying fungi play a key role in recycling nutrients of forest ecosystems by decomposing cellulose, hemicellulose, and lignin of the plant cell walls (Floudas et al. 2015). Polyporales, a large order in Basidiomycota, includes many important genera of wood-decaying fungi. Recent molecular studies employing multi-gene datasets have helped to provide a phylogenetic overview of Polyporales, in which thirty-four valid families are now recognized (Binder et al. 2013). The diversity of wood-decaying fungi is very high in China because of the large landscape ranging from boreal to tropical zones. More than 1200 species of wood-decaying fungi have been found in China (Dai 2011, 2012), and some a Chang-lin Zhao and Shi-liang Liu contributed equally to this work and share first-author status 30 .. -
A Phylogenetic Overview of the Antrodia Clade (Basidiomycota, Polyporales)
Mycologia, 105(6), 2013, pp. 1391–1411. DOI: 10.3852/13-051 # 2013 by The Mycological Society of America, Lawrence, KS 66044-8897 A phylogenetic overview of the antrodia clade (Basidiomycota, Polyporales) Beatriz Ortiz-Santana1 phylogenetic studies also have recognized the genera Daniel L. Lindner Amylocystis, Dacryobolus, Melanoporia, Pycnoporellus, US Forest Service, Northern Research Station, Center for Sarcoporia and Wolfiporia as part of the antrodia clade Forest Mycology Research, One Gifford Pinchot Drive, (SY Kim and Jung 2000, 2001; Binder and Hibbett Madison, Wisconsin 53726 2002; Hibbett and Binder 2002; SY Kim et al. 2003; Otto Miettinen Binder et al. 2005), while the genera Antrodia, Botanical Museum, University of Helsinki, PO Box 7, Daedalea, Fomitopsis, Laetiporus and Sparassis have 00014, Helsinki, Finland received attention in regard to species delimitation (SY Kim et al. 2001, 2003; KM Kim et al. 2005, 2007; Alfredo Justo Desjardin et al. 2004; Wang et al. 2004; Wu et al. 2004; David S. Hibbett Dai et al. 2006; Blanco-Dios et al. 2006; Chiu 2007; Clark University, Biology Department, 950 Main Street, Worcester, Massachusetts 01610 Lindner and Banik 2008; Yu et al. 2010; Banik et al. 2010, 2012; Garcia-Sandoval et al. 2011; Lindner et al. 2011; Rajchenberg et al. 2011; Zhou and Wei 2012; Abstract: Phylogenetic relationships among mem- Bernicchia et al. 2012; Spirin et al. 2012, 2013). These bers of the antrodia clade were investigated with studies also established that some of the genera are molecular data from two nuclear ribosomal DNA not monophyletic and several modifications have regions, LSU and ITS. A total of 123 species been proposed: the segregation of Antrodia s.l. -
A Re-Evaluation of Neotropical Junghuhnia S.Lat. (Polyporales, Basidiomycota) Based on Morphological and Multigene Analyses
Persoonia 41, 2018: 130–141 ISSN (Online) 1878-9080 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE https://doi.org/10.3767/persoonia.2018.41.07 A re-evaluation of Neotropical Junghuhnia s.lat. (Polyporales, Basidiomycota) based on morphological and multigene analyses M.C. Westphalen1,*, M. Rajchenberg2, M. Tomšovský3, A.M. Gugliotta1 Key words Abstract Junghuhnia is a genus of polypores traditionally characterised by a dimitic hyphal system with clamped generative hyphae and presence of encrusted skeletocystidia. However, recent molecular studies revealed that Mycodiversity Junghuhnia is polyphyletic and most of the species cluster with Steccherinum, a morphologically similar genus phylogeny separated only by a hydnoid hymenophore. In the Neotropics, very little is known about the evolutionary relation- Steccherinaceae ships of Junghuhnia s.lat. taxa and very few species have been included in molecular studies. In order to test the taxonomy proper phylogenetic placement of Neotropical species of this group, morphological and molecular analyses were carried out. Specimens were collected in Brazil and used for DNA sequence analyses of the internal transcribed spacer and the large subunit of the nuclear ribosomal RNA gene, the translation elongation factor 1-α gene, and the second largest subunit of RNA polymerase II gene. Herbarium collections, including type specimens, were studied for morphological comparison and to confirm the identity of collections. The molecular data obtained revealed that the studied species are placed in three different genera. Specimens of Junghuhnia carneola represent two distinct species that group in a lineage within the phlebioid clade, separated from Junghuhnia and Steccherinum, which belong to the residual polyporoid clade. -
Phylum Order Number of Species Number of Orders Family Genus Species Japanese Name Properties Phytopathogenicity Date Pref
Phylum Order Number of species Number of orders family genus species Japanese name properties phytopathogenicity date Pref. points R inhibition H inhibition R SD H SD Basidiomycota Polyporales 98 12 Meruliaceae Abortiporus Abortiporus biennis ニクウチワタケ saprobic "+" 2004-07-18 Kumamoto Haru, Kikuchi 40.4 -1.6 7.6 3.2 Basidiomycota Agaricales 171 1 Meruliaceae Abortiporus Abortiporus biennis ニクウチワタケ saprobic "+" 2004-07-16 Hokkaido Shari, Shari 74 39.3 2.8 4.3 Basidiomycota Agaricales 269 1 Agaricaceae Agaricus Agaricus arvensis シロオオハラタケ saprobic "-" 2000-09-25 Gunma Kawaba, Tone 87 49.1 2.4 2.3 Basidiomycota Polyporales 181 12 Agaricaceae Agaricus Agaricus bisporus ツクリタケ saprobic "-" 2004-04-16 Gunma Horosawa, Kiryu 36.2 -23 3.6 1.4 Basidiomycota Hymenochaetales 129 8 Agaricaceae Agaricus Agaricus moelleri ナカグロモリノカサ saprobic "-" 2003-07-15 Gunma Hirai, Kiryu 64.4 44.4 9.6 4.4 Basidiomycota Polyporales 105 12 Agaricaceae Agaricus Agaricus moelleri ナカグロモリノカサ saprobic "-" 2003-06-26 Nagano Minamiminowa, Kamiina 70.1 3.7 2.5 5.3 Basidiomycota Auriculariales 37 2 Agaricaceae Agaricus Agaricus subrutilescens ザラエノハラタケ saprobic "-" 2001-08-20 Fukushima Showa 67.9 37.8 0.6 0.6 Basidiomycota Boletales 251 3 Agaricaceae Agaricus Agaricus subrutilescens ザラエノハラタケ saprobic "-" 2000-09-25 Yamanashi Hakusyu, Hokuto 80.7 48.3 3.7 7.4 Basidiomycota Agaricales 9 1 Agaricaceae Agaricus Agaricus subrutilescens ザラエノハラタケ saprobic "-" 85.9 68.1 1.9 3.1 Basidiomycota Hymenochaetales 129 8 Strophariaceae Agrocybe Agrocybe cylindracea ヤナギマツタケ saprobic "-" 2003-08-23 -
Fungal Diversity in the Mediterranean Area
Fungal Diversity in the Mediterranean Area • Giuseppe Venturella Fungal Diversity in the Mediterranean Area Edited by Giuseppe Venturella Printed Edition of the Special Issue Published in Diversity www.mdpi.com/journal/diversity Fungal Diversity in the Mediterranean Area Fungal Diversity in the Mediterranean Area Editor Giuseppe Venturella MDPI • Basel • Beijing • Wuhan • Barcelona • Belgrade • Manchester • Tokyo • Cluj • Tianjin Editor Giuseppe Venturella University of Palermo Italy Editorial Office MDPI St. Alban-Anlage 66 4052 Basel, Switzerland This is a reprint of articles from the Special Issue published online in the open access journal Diversity (ISSN 1424-2818) (available at: https://www.mdpi.com/journal/diversity/special issues/ fungal diversity). For citation purposes, cite each article independently as indicated on the article page online and as indicated below: LastName, A.A.; LastName, B.B.; LastName, C.C. Article Title. Journal Name Year, Article Number, Page Range. ISBN 978-3-03936-978-2 (Hbk) ISBN 978-3-03936-979-9 (PDF) c 2020 by the authors. Articles in this book are Open Access and distributed under the Creative Commons Attribution (CC BY) license, which allows users to download, copy and build upon published articles, as long as the author and publisher are properly credited, which ensures maximum dissemination and a wider impact of our publications. The book as a whole is distributed by MDPI under the terms and conditions of the Creative Commons license CC BY-NC-ND. Contents About the Editor .............................................. vii Giuseppe Venturella Fungal Diversity in the Mediterranean Area Reprinted from: Diversity 2020, 12, 253, doi:10.3390/d12060253 .................... 1 Elias Polemis, Vassiliki Fryssouli, Vassileios Daskalopoulos and Georgios I. -
Molecular Phylogeny and Taxonomic Position of Trametes Cervina and Description of a New Genus Trametopsis
CZECH MYCOL. 60(1): 1–11, 2008 Molecular phylogeny and taxonomic position of Trametes cervina and description of a new genus Trametopsis MICHAL TOMŠOVSKÝ Faculty of Forestry and Wood Technology, Mendel University of Agriculture and Forestry in Brno, Zemědělská 3, CZ-613 00, Brno, Czech Republic [email protected] Tomšovský M. (2008): Molecular phylogeny and taxonomic position of Trametes cervina and description of a new genus Trametopsis. – Czech Mycol. 60(1): 1–11. Trametes cervina (Schwein.) Bres. differs from other species of the genus by remarkable morpho- logical characters (shape of pores, hyphal system). Moreover, an earlier published comparison of the DNA sequences within the genus revealed considerable differences between this species and the re- maining European members of the genus Trametes. These results were now confirmed using se- quences of nuclear LSU and mitochondrial SSU regions of ribosomal DNA. The most related species of Trametes cervina are Ceriporiopsis aneirina and C. resinascens. According to these facts, the new genus Trametopsis Tomšovský is described and the new combination Trametopsis cervina (Schwein.) Tomšovský is proposed. Key words: Trametopsis, Trametes, ribosomal DNA, polypore, taxonomy. Tomšovský M. (2008): Molekulární fylogenetika a taxonomické zařazení outkovky jelení, Trametes cervina, a popis nového rodu Trametopsis. – Czech Mycol. 60(1): 1–11. Outkovka jelení, Trametes cervina (Schwein.) Bres., se liší od ostatních zástupců rodu nápadnými morfologickými znaky (tvar rourek, hyfový systém). Také dříve uveřejněné srovnání sekvencí DNA v rámci rodu Trametes odhalilo významné rozdíly mezi tímto druhem a ostatními evropskými zástupci rodu. Uvedené výsledky byly nyní potvrzeny za použití sekvencí jaderné LSU a mitochondriální SSU oblasti ribozomální DNA, přičemž nejpříbuznějšími druhu Trametes cervina jsou Ceriporiopsis anei- rina a C.