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The Use of Algae and Fungi for Removal of Pharmaceuticals by Bioremediation and Biosorption Processes: a Review
Review The Use of Algae and Fungi for Removal of Pharmaceuticals by Bioremediation and Biosorption Processes: A Review Andreia Silva, Cristina Delerue-Matos, Sónia A. Figueiredo and Olga M. Freitas * REQUIMTE/LAQV, Instituto Superior de Engenharia do Porto, Rua Dr. António Bernardino de Almeida 431, 4200-072 Porto, Portugal * Correspondence: [email protected] Received: 3 July 2019; Accepted: 25 July 2019; Published: 27 July 2019 Abstract: The occurrence and fate of pharmaceuticals in the aquatic environment is recognized as one of the emerging issues in environmental chemistry. Conventional wastewater treatment plants (WWTPs) are not designed to remove pharmaceuticals (and their metabolites) from domestic wastewaters. The treatability of pharmaceutical compounds in WWTPs varies considerably depending on the type of compound since their biodegradability can differ significantly. As a consequence, they may reach the aquatic environment, directly or by leaching of the sludge produced by these facilities. Currently, the technologies under research for the removal of pharmaceuticals, namely membrane technologies and advanced oxidation processes, have high operation costs related to energy and chemical consumption. When chemical reactions are involved, other aspects to consider include the formation of harmful reaction by-products and the management of the toxic sludge produced. Research is needed in order to develop economic and sustainable treatment processes, such as bioremediation and biosorption. The use of low-cost materials, such as biological matrices (e.g., algae and fungi), has advantages such as low capital investment, easy operation, low operation costs, and the non-formation of degradation by-products. An extensive review of existing research on this subject is presented. -
Oxalic Acid Degradation by a Novel Fungal Oxalate Oxidase from Abortiporus Biennis Marcin Grąz1*, Kamila Rachwał2, Radosław Zan2 and Anna Jarosz-Wilkołazka1
Vol. 63, No 3/2016 595–600 http://dx.doi.org/10.18388/abp.2016_1282 Regular paper Oxalic acid degradation by a novel fungal oxalate oxidase from Abortiporus biennis Marcin Grąz1*, Kamila Rachwał2, Radosław Zan2 and Anna Jarosz-Wilkołazka1 1Department of Biochemistry, Maria Curie-Skłodowska University, Lublin, Poland; 2Department of Genetics and Microbiology, Maria Curie-Skłodowska University, Lublin, Poland Oxalate oxidase was identified in mycelial extracts of a to formic acid and carbon dioxide (Mäkelä et al., 2002). basidiomycete Abortiporus biennis strain. Intracellular The degradation of oxalate via action of oxalate oxidase enzyme activity was detected only after prior lowering (EC 1.2.3.4), described in our study, is atypical for fun- of the pH value of the fungal cultures by using oxalic or gi and was found predominantly in higher plants. The hydrochloric acids. This enzyme was purified using size best characterised oxalate oxidase originates from cereal exclusion chromatography (Sephadex G-25) and ion-ex- plants (Dunwell, 2000). Currently, only three oxalate oxi- change chromatography (DEAE-Sepharose). This enzyme dases of basidiomycete fungi have been described - an exhibited optimum activity at pH 2 when incubated at enzyme from Tilletia contraversa (Vaisey et al., 1961), the 40°C, and the optimum temperature was established at best characterised so far enzyme from Ceriporiopsis subver- 60°C. Among the tested organic acids, this enzyme ex- mispora (Aguilar et al., 1999), and an enzyme produced by hibited specificity only towards oxalic acid. Molecular Abortiporus biennis (Grąz et al., 2009). The enzyme from mass was calculated as 58 kDa. The values of Km for oxa- C. -
Wood Decay by Inonotus Rickii and Bjerkandera Adusta: a Micro- and Ultra-Structural Approach
IAWARobles Journal et al.35 – (1), Wood 2014: decay 51–60 51 WOOD DECAY BY INONOTUS RICKII AND BJERKANDERA ADUSTA: A MICRO- AND ULTRA-STRUCTURAL APPROACH Carolina Analía Robles1,*, María Agueda Castro2 and Silvia Edith Lopez1 1PROPLAME-PRHIDEB-CONICET & 2Laboratorio de Anatomía Vegetal Aplicada, Departamento de Biodiversidad y Biología Experimental, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, PB II, 4to piso, CP 1428EHA Ciudad Autónoma de Buenos Aires, Argentina *Corresponding author; e-mail: [email protected] ABSTRACT Bjerkandera adusta (Willd.) P. Karst. and Inonotus rickii (Pat.) D.A. Reid. are important xylophagous fungi affecting street trees in Buenos Aires City, Ar- gentina. The objective of this paper is to describe the decay patterns produced by these species in London plane wood (Platanus acerifolia (Ait.) Willd.), which is one of the most abundant tree species in the city, through light microscopy (LM), scanning electron microscopy (SEM) and transmission electron microscopy (TEM). A better knowledge of the decay patterns of these fungi at early stages would provide useful information for optimizing tree management programs. Microscopic observations showed that B. adusta, having caused an important loss of dry weight, showed more extensive degradation of wood after three months than I. rickii, affecting mainly fiber walls with potential consequences in tree strength and stiffness. Inonotus rickii, on the other hand, selectively af- fected vessel walls and middle lamellae between fibers. Rays remained virtually unaltered in all decayed wood. Keywords: Wood-rotting fungi, white rot, delignification, Platanus acerifolia. INTRODUCTION White-rot fungi remove lignin, cellulose and hemicelluloses from wood. -
Phylum Order Number of Species Number of Orders Family Genus Species Japanese Name Properties Phytopathogenicity Date Pref
Phylum Order Number of species Number of orders family genus species Japanese name properties phytopathogenicity date Pref. points R inhibition H inhibition R SD H SD Basidiomycota Polyporales 98 12 Meruliaceae Abortiporus Abortiporus biennis ニクウチワタケ saprobic "+" 2004-07-18 Kumamoto Haru, Kikuchi 40.4 -1.6 7.6 3.2 Basidiomycota Agaricales 171 1 Meruliaceae Abortiporus Abortiporus biennis ニクウチワタケ saprobic "+" 2004-07-16 Hokkaido Shari, Shari 74 39.3 2.8 4.3 Basidiomycota Agaricales 269 1 Agaricaceae Agaricus Agaricus arvensis シロオオハラタケ saprobic "-" 2000-09-25 Gunma Kawaba, Tone 87 49.1 2.4 2.3 Basidiomycota Polyporales 181 12 Agaricaceae Agaricus Agaricus bisporus ツクリタケ saprobic "-" 2004-04-16 Gunma Horosawa, Kiryu 36.2 -23 3.6 1.4 Basidiomycota Hymenochaetales 129 8 Agaricaceae Agaricus Agaricus moelleri ナカグロモリノカサ saprobic "-" 2003-07-15 Gunma Hirai, Kiryu 64.4 44.4 9.6 4.4 Basidiomycota Polyporales 105 12 Agaricaceae Agaricus Agaricus moelleri ナカグロモリノカサ saprobic "-" 2003-06-26 Nagano Minamiminowa, Kamiina 70.1 3.7 2.5 5.3 Basidiomycota Auriculariales 37 2 Agaricaceae Agaricus Agaricus subrutilescens ザラエノハラタケ saprobic "-" 2001-08-20 Fukushima Showa 67.9 37.8 0.6 0.6 Basidiomycota Boletales 251 3 Agaricaceae Agaricus Agaricus subrutilescens ザラエノハラタケ saprobic "-" 2000-09-25 Yamanashi Hakusyu, Hokuto 80.7 48.3 3.7 7.4 Basidiomycota Agaricales 9 1 Agaricaceae Agaricus Agaricus subrutilescens ザラエノハラタケ saprobic "-" 85.9 68.1 1.9 3.1 Basidiomycota Hymenochaetales 129 8 Strophariaceae Agrocybe Agrocybe cylindracea ヤナギマツタケ saprobic "-" 2003-08-23 -
Identification and Tracking Activity of Fungus from the Antarctic Pole on Antagonistic of Aquatic Pathogenic Bacteria
INTERNATIONAL JOURNAL OF AGRICULTURE & BIOLOGY ISSN Print: 1560–8530; ISSN Online: 1814–9596 19F–079/2019/22–6–1311–1319 DOI: 10.17957/IJAB/15.1203 http://www.fspublishers.org Full Length Article Identification and Tracking Activity of Fungus from the Antarctic Pole on Antagonistic of Aquatic Pathogenic Bacteria Chuner Cai1,2,3, Haobing Yu1, Huibin Zhao2, Xiaoyu Liu1*, Binghua Jiao1 and Bo Chen4 1Department of Biochemistry and Molecular Biology, College of Basic Medicine, Naval Medical University, Shanghai, 200433, China 2College of Marine Ecology and Environment, Shanghai Ocean University, Shanghai, 201306, China 3Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Lianyungang, Jiangsu, 222005, China 4Polar Research Institute of China, Shanghai, 200136, China *For correspondence: [email protected] Abstract To seek the lead compound with the activity of antagonistic aquatic pathogenic bacteria in Antarctica fungi, the work identified species of a previously collected fungus with high sensitivity to Aeromonas hydrophila ATCC7966 and Streptococcus agalactiae. Potential active compounds were separated from fermentation broth by activity tracking and identified in structure by spectrum. The results showed that this fungus had common characteristics as Basidiomycota in morphology. According to 18S rDNA and internal transcribed space (ITS) DNA sequencing, this fungus was identified as Bjerkandera adusta in family Meruliaceae. Two active compounds viz., veratric acid and erythro-1-(3, 5-dichlone-4- methoxyphenyl)-1, 2-propylene glycol were identified by nuclear magnetic resonance spectrum and mass spectrum. Veratric acid was separated for the first time from any fungus, while erythro-1-(3, 5-dichlone-4-methoxyphenyl)-1, 2-propylene glycol was once reported in Bjerkandera. -
The Fungi Constitute a Major Eukary- Members of the Monophyletic Kingdom Fungi ( Fig
American Journal of Botany 98(3): 426–438. 2011. T HE FUNGI: 1, 2, 3 … 5.1 MILLION SPECIES? 1 Meredith Blackwell 2 Department of Biological Sciences; Louisiana State University; Baton Rouge, Louisiana 70803 USA • Premise of the study: Fungi are major decomposers in certain ecosystems and essential associates of many organisms. They provide enzymes and drugs and serve as experimental organisms. In 1991, a landmark paper estimated that there are 1.5 million fungi on the Earth. Because only 70 000 fungi had been described at that time, the estimate has been the impetus to search for previously unknown fungi. Fungal habitats include soil, water, and organisms that may harbor large numbers of understudied fungi, estimated to outnumber plants by at least 6 to 1. More recent estimates based on high-throughput sequencing methods suggest that as many as 5.1 million fungal species exist. • Methods: Technological advances make it possible to apply molecular methods to develop a stable classifi cation and to dis- cover and identify fungal taxa. • Key results: Molecular methods have dramatically increased our knowledge of Fungi in less than 20 years, revealing a mono- phyletic kingdom and increased diversity among early-diverging lineages. Mycologists are making signifi cant advances in species discovery, but many fungi remain to be discovered. • Conclusions: Fungi are essential to the survival of many groups of organisms with which they form associations. They also attract attention as predators of invertebrate animals, pathogens of potatoes and rice and humans and bats, killers of frogs and crayfi sh, producers of secondary metabolites to lower cholesterol, and subjects of prize-winning research. -
Basidiomycetes Inhabiting the Ornamental Tree Catalpa (Bignoniaceae)
©Österreichische Mykologische Gesellschaft, Austria, download unter www.biologiezentrum.at Österr. Z. Pilzk. 19(2010) Basidiomycetes inhabiting the ornamental tree Catalpa (Bignoniaceae) JURAJ PACLT Nam Benku, Martina 24/4083 81107 Bratislava 1, Slovakia Accepted 11. 1.2010 Key words: Basidiomycetes. - Fungus-host associations, Catalpa. Abstract: Attention is paid to all basidiomycetous species hitherto known to occur on Catalpa as host plant. During 1955-1997 more than 20 new fungus-host associations from diverse species of Catalpa grown in Europe could be found by the author. Zusammenfassung: Basidiomyzeten, die bisher von Catalpa als Wirtspflanze bekannt sind, werden aufgeführt. Dem Autor gelang es, 1955-1997 mehr als zwanzig neue Pilz-Wirt-Assoziationen von ver- schiedenen in Europa angepflanzten Catalpa-Artcn zu finden. Catalpa SCOP. (Bignoniaceae), called cigar-tree in the USA, a genus native to the United States of America [Southern Catalpa = C. hignonioides WALTER, Hardy Ca- talpa = C. speciosa (WARDER ex BARNEY) ENGELM.], West Indies and/or China. Common species of the genus are favoured as ornamental trees due to their showy panicles of flowers and long cigar-like pendent capsular fruits as well. In Europe, spe- cies of Catalpa are often cultivated as park- and street-trees. OUDEMANS (1923) mentioned only four species of Basidiomycetes for Catalpa, i.e., Polyponts distortus (= Abortipoms biennis). Pistil/aha mucedina. Pistil/aria mucoroides, and Polyponis distinctus (nomen dubium). Six further basidiomycetous species collected on Catalpa were listed in the next host index by SEYMOUR (1929): Exidia saccharina, Polyponis adustus (= Bjerkandera adusta), Schizophyllum commune, Stereum albobadium (= Dendrophora alhobadia), Stereum versicolor, and Trametes sepium (= Antrodia al- bida). -
9B Taxonomy to Genus
Fungus and Lichen Genera in the NEMF Database Taxonomic hierarchy: phyllum > class (-etes) > order (-ales) > family (-ceae) > genus. Total number of genera in the database: 526 Anamorphic fungi (see p. 4), which are disseminated by propagules not formed from cells where meiosis has occurred, are presently not grouped by class, order, etc. Most propagules can be referred to as "conidia," but some are derived from unspecialized vegetative mycelium. A significant number are correlated with fungal states that produce spores derived from cells where meiosis has, or is assumed to have, occurred. These are, where known, members of the ascomycetes or basidiomycetes. However, in many cases, they are still undescribed, unrecognized or poorly known. (Explanation paraphrased from "Dictionary of the Fungi, 9th Edition.") Principal authority for this taxonomy is the Dictionary of the Fungi and its online database, www.indexfungorum.org. For lichens, see Lecanoromycetes on p. 3. Basidiomycota Aegerita Poria Macrolepiota Grandinia Poronidulus Melanophyllum Agaricomycetes Hyphoderma Postia Amanitaceae Cantharellales Meripilaceae Pycnoporellus Amanita Cantharellaceae Abortiporus Skeletocutis Bolbitiaceae Cantharellus Antrodia Trichaptum Agrocybe Craterellus Grifola Tyromyces Bolbitius Clavulinaceae Meripilus Sistotremataceae Conocybe Clavulina Physisporinus Trechispora Hebeloma Hydnaceae Meruliaceae Sparassidaceae Panaeolina Hydnum Climacodon Sparassis Clavariaceae Polyporales Gloeoporus Steccherinaceae Clavaria Albatrellaceae Hyphodermopsis Antrodiella -
New Records of Polypores from Iran, with a Checklist of Polypores for Gilan Province
CZECH MYCOLOGY 68(2): 139–148, SEPTEMBER 27, 2016 (ONLINE VERSION, ISSN 1805-1421) New records of polypores from Iran, with a checklist of polypores for Gilan Province 1 2 MOHAMMAD AMOOPOUR ,MASOOMEH GHOBAD-NEJHAD *, 1 SEYED AKBAR KHODAPARAST 1 Department of Plant Protection, Faculty of Agricultural Sciences, University of Gilan, P.O. Box 41635-1314, Rasht 4188958643, Iran. 2 Department of Biotechnology, Iranian Research Organization for Science and Technology (IROST), P.O. Box 3353-5111, Tehran 3353136846, Iran; [email protected] *corresponding author Amoopour M., Ghobad-Nejhad M., Khodaparast S.A. (2016): New records of polypores from Iran, with a checklist of polypores for Gilan Province. – Czech Mycol. 68(2): 139–148. As a result of a survey of poroid basidiomycetes in Gilan Province, Antrodiella fragrans, Ceriporia aurantiocarnescens, Oligoporus tephroleucus, Polyporus udus,andTyromyces kmetii are newly reported from Iran, and the following seven species are reported as new to this province: Coriolopsis gallica, Fomitiporia punctata, Hapalopilus nidulans, Inonotus cuticularis, Oligo- porus hibernicus, Phylloporia ribis,andPolyporus tuberaster. An updated checklist of polypores for Gilan Province is provided. Altogether, 66 polypores are known from Gilan up to now. Key words: fungi, hyrcanian forests, poroid basidiomycetes. Article history: received 28 July 2016, revised 13 September 2016, accepted 14 September 2016, published online 27 September 2016. Amoopour M., Ghobad-Nejhad M., Khodaparast S.A. (2016): Nové nálezy chorošů pro Írán a checklist chorošů provincie Gilan. – Czech Mycol. 68(2): 139–148. Jako výsledek systematického výzkumu chorošotvarých hub v provincii Gilan jsou publikovány nové druhy pro Írán: Antrodiella fragrans, Ceriporia aurantiocarnescens, Oligoporus tephroleu- cus, Polyporus udus a Tyromyces kmetii. -
<I>Rhomboidia Wuliangshanensis</I> Gen. & Sp. Nov. from Southwestern
MYCOTAXON ISSN (print) 0093-4666 (online) 2154-8889 Mycotaxon, Ltd. ©2019 October–December 2019—Volume 134, pp. 649–662 https://doi.org/10.5248/134.649 Rhomboidia wuliangshanensis gen. & sp. nov. from southwestern China Tai-Min Xu1,2, Xiang-Fu Liu3, Yu-Hui Chen2, Chang-Lin Zhao1,3* 1 Yunnan Provincial Innovation Team on Kapok Fiber Industrial Plantation; 2 College of Life Sciences; 3 College of Biodiversity Conservation: Southwest Forestry University, Kunming 650224, P.R. China * Correspondence to: [email protected] Abstract—A new, white-rot, poroid, wood-inhabiting fungal genus, Rhomboidia, typified by R. wuliangshanensis, is proposed based on morphological and molecular evidence. Collected from subtropical Yunnan Province in southwest China, Rhomboidia is characterized by annual, stipitate basidiomes with rhomboid pileus, a monomitic hyphal system with thick-walled generative hyphae bearing clamp connections, and broadly ellipsoid basidiospores with thin, hyaline, smooth walls. Phylogenetic analyses of ITS and LSU nuclear RNA gene regions showed that Rhomboidia is in Steccherinaceae and formed as distinct, monophyletic lineage within a subclade that includes Nigroporus, Trullella, and Flabellophora. Key words—Polyporales, residual polyporoid clade, taxonomy, wood-rotting fungi Introduction Polyporales Gäum. is one of the most intensively studied groups of fungi with many species of interest to fungal ecologists and applied scientists (Justo & al. 2017). Species of wood-inhabiting fungi in Polyporales are important as saprobes and pathogens in forest ecosystems and in their application in biomedical engineering and biodegradation systems (Dai & al. 2009, Levin & al. 2016). With roughly 1800 described species, Polyporales comprise about 1.5% of all known species of Fungi (Kirk & al. -
Polyporales, Basidiomycota), a New Polypore Species and Genus from Finland
Ann. Bot. Fennici 54: 159–167 ISSN 0003-3847 (print) ISSN 1797-2442 (online) Helsinki 18 April 2017 © Finnish Zoological and Botanical Publishing Board 2017 Caudicicola gracilis (Polyporales, Basidiomycota), a new polypore species and genus from Finland Heikki Kotiranta1,*, Matti Kulju2 & Otto Miettinen3 1) Finnish Environment Institute, Natural Environment Centre, P.O. Box 140, FI-00251 Helsinki, Finland (*corresponding author’s e-mail: [email protected]) 2) Biodiversity Unit, P.O. Box 3000, FI-90014 University of Oulu, Finland 3) Finnish Museum of Natural History, Botanical Museum, P.O. Box 7, FI-00014 University of Helsinki, Finland Received 10 Jan. 2017, final version received 23 Mar. 2017, accepted 27 Mar. 2017 Kotiranta H., Kulju M. & Miettinen O. 2017: Caudicicola gracilis (Polyporales, Basidiomycota), a new polypore species and genus from Finland. — Ann. Bot. Fennici 54: 159–167. A new monotypic polypore genus, Caudicicola Miettinen, Kotir. & Kulju, is described for the new species C. gracilis Kotir., Kulju & Miettinen. The species was collected in central Finland from Picea abies and Pinus sylvestris stumps, where it grew on undersides of stumps and roots. Caudicicola gracilis is characterized by very fragile basidiocarps, monomitic hyphal structure with clamps, short and wide tramal cells, smooth ellipsoid spores, basidia with long sterigmata and conidiogenous areas in the margins of the basidiocarp producing verrucose, slightly thick-walled conidia. The genus belongs to the residual polyporoid clade of the Polyporales in the vicinity of Steccherinaceae, but has no known close relatives. Introduction sis taxicola, Pycnoporellus fulgens and its suc- cessional predecessor Fomitopsis pinicola, and The species described here was found when deciduous tree trunks had such seldom collected Heino Kulju, the brother of the second author, species as Athelopsis glaucina (on Salix) and was making a forest road for tractors. -
Polypore Diversity in North America with an Annotated Checklist
Mycol Progress (2016) 15:771–790 DOI 10.1007/s11557-016-1207-7 ORIGINAL ARTICLE Polypore diversity in North America with an annotated checklist Li-Wei Zhou1 & Karen K. Nakasone2 & Harold H. Burdsall Jr.2 & James Ginns3 & Josef Vlasák4 & Otto Miettinen5 & Viacheslav Spirin5 & Tuomo Niemelä 5 & Hai-Sheng Yuan1 & Shuang-Hui He6 & Bao-Kai Cui6 & Jia-Hui Xing6 & Yu-Cheng Dai6 Received: 20 May 2016 /Accepted: 9 June 2016 /Published online: 30 June 2016 # German Mycological Society and Springer-Verlag Berlin Heidelberg 2016 Abstract Profound changes to the taxonomy and classifica- 11 orders, while six other species from three genera have tion of polypores have occurred since the advent of molecular uncertain taxonomic position at the order level. Three orders, phylogenetics in the 1990s. The last major monograph of viz. Polyporales, Hymenochaetales and Russulales, accom- North American polypores was published by Gilbertson and modate most of polypore species (93.7 %) and genera Ryvarden in 1986–1987. In the intervening 30 years, new (88.8 %). We hope that this updated checklist will inspire species, new combinations, and new records of polypores future studies in the polypore mycota of North America and were reported from North America. As a result, an updated contribute to the diversity and systematics of polypores checklist of North American polypores is needed to reflect the worldwide. polypore diversity in there. We recognize 492 species of polypores from 146 genera in North America. Of these, 232 Keywords Basidiomycota . Phylogeny . Taxonomy . species are unchanged from Gilbertson and Ryvarden’smono- Wood-decaying fungus graph, and 175 species required name or authority changes.