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Deficiency in the DNA Repair Protein ERCC1 Triggers a Link Between Senescence and Apoptosis in Human Fibroblasts and Mouse Skin
Lawrence Berkeley National Laboratory Recent Work Title Deficiency in the DNA repair protein ERCC1 triggers a link between senescence and apoptosis in human fibroblasts and mouse skin. Permalink https://escholarship.org/uc/item/73j1s4d1 Journal Aging cell, 19(3) ISSN 1474-9718 Authors Kim, Dong Eun Dollé, Martijn ET Vermeij, Wilbert P et al. Publication Date 2020-03-01 DOI 10.1111/acel.13072 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Received: 10 June 2019 | Revised: 7 October 2019 | Accepted: 30 October 2019 DOI: 10.1111/acel.13072 ORIGINAL ARTICLE Deficiency in the DNA repair protein ERCC1 triggers a link between senescence and apoptosis in human fibroblasts and mouse skin Dong Eun Kim1 | Martijn E. T. Dollé2 | Wilbert P. Vermeij3,4 | Akos Gyenis5 | Katharina Vogel5 | Jan H. J. Hoeijmakers3,4,5 | Christopher D. Wiley1 | Albert R. Davalos1 | Paul Hasty6 | Pierre-Yves Desprez1 | Judith Campisi1,7 1Buck Institute for Research on Aging, Novato, CA, USA Abstract 2Centre for Health Protection Research, ERCC1 (excision repair cross complementing-group 1) is a mammalian endonuclease National Institute of Public Health and that incises the damaged strand of DNA during nucleotide excision repair and inter- the Environment (RIVM), Bilthoven, The −/Δ Netherlands strand cross-link repair. Ercc1 mice, carrying one null and one hypomorphic Ercc1 3Department of Molecular Genetics, allele, have been widely used to study aging due to accelerated aging phenotypes Erasmus University Medical Center, −/Δ Rotterdam, The Netherlands in numerous organs and their shortened lifespan. Ercc1 mice display combined 4Princess Máxima Center for Pediatric features of human progeroid and cancer-prone syndromes. -
BRIP1, BRCA1 Interacting Protein C-Terminal Helicase 1 Polyclonal Antibody
BRIP1, BRCA1 interacting protein C-terminal helicase 1 polyclonal antibody RCA1 interacts in vivo with BRCA1 interacting protein C-terminal helicase 1 (BRIP1) also called BACH1, is a member of the or Research Use Only. Not for B FDiagnostic or Therapeutic Use. RecQ DEAH helicase family and interacts with the BRCT repeats of Purchase does not include or carry the breast cancer type 1 protein (BRCA1). Helicases of the RecQ any right to resell or transfer this DEAH family have been shown to be important for the maintenance product either as a stand-alone of genomic integrity in prokaryotes and eukaryotes. Members of this product or as a component of another family are genes responsible for cancer predisposition disorders like product. Any use of this product other Bloom’s syndrome, Werner’s syndrome and Rothmund-Thomson than the permitted use without the syndrome. The BRCA1/BRIP complex is important in the normal express written authorization of Allele double-strand break repair function of BRCA1. Since mutations in Biotech is strictly prohibited BRIP1 interfere with normal double-strand break repair in a manner that is dependent on its BRCA1 binding function, BRIP1 may be a target of germline cancer-inducing mutations. Website: www.allelebiotech.com Buffers Call: 1-800-991-RNAi/858-587-6645 (Pacific Time: 9:00AM~5:00PM) Purified rabbit polyclonal antibody supplied in PBS with 0.09% (W/V) Email: [email protected] sodium azide. This antibody is purified through a protein G column and eluted out with both high and low pH buffers and neutralized immediately after elution then followed by dialysis against PBS. -
Structure and Function of the Human Recq DNA Helicases
Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2005 Structure and function of the human RecQ DNA helicases Garcia, P L Posted at the Zurich Open Repository and Archive, University of Zurich ZORA URL: https://doi.org/10.5167/uzh-34420 Dissertation Published Version Originally published at: Garcia, P L. Structure and function of the human RecQ DNA helicases. 2005, University of Zurich, Faculty of Science. Structure and Function of the Human RecQ DNA Helicases Dissertation zur Erlangung der naturwissenschaftlichen Doktorw¨urde (Dr. sc. nat.) vorgelegt der Mathematisch-naturwissenschaftlichen Fakultat¨ der Universitat¨ Z ¨urich von Patrick L. Garcia aus Unterseen BE Promotionskomitee Prof. Dr. Josef Jiricny (Vorsitz) Prof. Dr. Ulrich H ¨ubscher Dr. Pavel Janscak (Leitung der Dissertation) Z ¨urich, 2005 For my parents ii Summary The RecQ DNA helicases are highly conserved from bacteria to man and are required for the maintenance of genomic stability. All unicellular organisms contain a single RecQ helicase, whereas the number of RecQ homologues in higher organisms can vary. Mu- tations in the genes encoding three of the five human members of the RecQ family give rise to autosomal recessive disorders called Bloom syndrome, Werner syndrome and Rothmund-Thomson syndrome. These diseases manifest commonly with genomic in- stability and a high predisposition to cancer. However, the genetic alterations vary as well as the types of tumours in these syndromes. Furthermore, distinct clinical features are observed, like short stature and immunodeficiency in Bloom syndrome patients or premature ageing in Werner Syndrome patients. Also, the biochemical features of the human RecQ-like DNA helicases are diverse, pointing to different roles in the mainte- nance of genomic stability. -
What Is Fanconi Anemia and How Is It Diagnosed
Fanconi anemia and its diagnosis: Fanconi anemia (FA), named for the Swiss pediatrician Guido Fanconi, is an inherited disorder that can lead to bone marrow failure (aplastic anemia), leukemia and/or solid tumors, with oral and gynecologic tumors being the most common. FA is almost exclusively a recessive disorder: if both parents carry a defect (mutation) in the same FA gene, each of their children has a 25% chance of inheriting the defective gene from both parents. When this happens, the child will have FA. While the total number of FA patients is not documented worldwide, scientists estimate that the carrier frequency (carriers are people carrying a defect in one copy of a particular FA gene, whose other copy of that same FA gene is normal) for FA in the U.S. is 1 in 181. The incidence rate, or the likelihood of a child being born with FA, is about 1 in 131,000 in the U.S., with approximately 31 babies born with FA each year. Scientists have now discovered 19 FA genes [FANCA, -B, -C, -D1 (also known as BRCA2), D2, E, F, G, I, J, L, M, N, O, P, Q, RAD51, BRCA1, and T]. Mutations in these genes account for more than 95% of reported Fanconi anemia cases. Mutations in FANCA, FANCC and FANCG are the most common and account for approximately 85% of FA patients worldwide. FANCD1, FANCD2, FANCE, FANCF and FANCL account for 10%, while the remaining FA genes, FANCB, FANCI, FANCJ, FANCM, FANCN, FANCO, FANCP, and FANCQ represent less than 5%. Some individuals with FA do not appear to have mutations in these 19 genes, so we anticipate that additional FA genes will be discovered in the future. -
Nucleotide Excision Repair Gene ERCC2 and ERCC5 Variants Increase Risk of Uterine Cervical Cancer
pISSN 1598-2998, eISSN 2005-9256 Cancer Res Treat. 2016;48(2):708-714 http://dx.doi.org/10.4143/crt.2015.098 Original Article Open Access Nucleotide Excision Repair Gene ERCC2 and ERCC5 Variants Increase Risk of Uterine Cervical Cancer Jungnam Joo, PhD 1, Kyong-Ah Yoon, PhD 2, Tomonori Hayashi, PhD 3, Sun-Young Kong, MD, PhD 4, Hye-Jin Shin, MS 5, Boram Park, MS 1, Young Min Kim, PhD 6, Sang-Hyun Hwang, MD, PhD 7, Jeongseon Kim, PhD 8, Aesun Shin, MD, PhD 8,9 , Joo-Young Kim, MD, PhD 5,10 1Biometric Research Branch, 2Lung Cancer Branch, National Cancer Center, Goyang, Korea, 3Department of Radiobiology and Molecular Epidemiology, Radiation Effects Research Foundation, Hiroshima, Japan, 4Translational Epidemiology Research Branch and Department of Laboratory Medicine, 5Radiation Medicine Branch, National Cancer Center, Goyang, Korea, 6Department of Statistics, Radiation Effects Research Foundation, Hiroshima, Japan, 7Hematologic Malignancy Branch and Department of Laboratory Medicine, 8Molecular Epidemiology Branch, National Cancer Center, Goyang, 9Department of Preventive Medicine, Seoul National University College of Medicine, Seoul, 10 Center for Proton Therapy, Research Institute and Hospital, National Cancer Center, Goyang, Korea Supplementary Data Table of Contents Supplementary Fig. S1 ........................................................................................................................................................................... 2 Supplementary Table 1 ......................................................................................................................................................................... -
A Novel Breast Cancer ^ Associated BRIP1 (FANCJ/BACH1) Germ- Line Mutation Impairs Protein Stability and Function
Cancer Prevention and Susceptibility A Novel Breast Cancer ^ Associated BRIP1 (FANCJ/BACH1)Germ- line Mutation Impairs Protein Stability and Function Arcangela De Nicolo,1MariellaTancredi,4 Grazia Lombardi,4 Cristina Chantal Flemma,4 Serena Barbuti,4 Claudio Di Cristofano,4 Bijan Sobhian,1Generoso Bevilacqua,4 Ronny Drapkin,2,3 andMariaAdelaideCaligo4 Abstract Purpose: BRCA1-interacting protein 1 (BRIP1; FANCJ/BACH1), which encodes a DNA helicase that interacts with BRCA1, has been suggested to be a low-penetrance breast cancer predispos- ing gene.We aimed to assess whether BRIP1 mutations contribute to breast cancer susceptibility in our population and, if so, to investigate the effect of such mutation(s) on BRIP1function. Experimental Design: A series of49 breast/ovarian cancer families, devoid ofa BRCA1/ BRCA2 mutation, were screened for BRIP1 mutations. Functional analyses, including coimmuno- precipitation and stability assays, were employed to further characterize a previously unreported variant. Results: Five sequence alterations were identified, of which four had been already described. Herein, we report a novel BRIP1 germ-line mutation identified in a woman with early-onset breast cancer. The mutation consists ofa 4-nucleotide deletion (c.2992-2995delAAGA) in BRIP1 exon 20 that causes a shift in the reading frame, disrupts the BRCA1-binding domain of BRIP1, and creates a premature stop codon. Functional analysis ofthe recombinant mutant protein in transfected cells showed that the truncation interferes with the stability of the protein and with its ability to interact with BRCA1. Loss ofthe wild-type BRIP1 allele with retention ofthe mutated one was observed in the patient’s breast tumor tissue. Conclusions: These results, by showing that the newly identified BRIP1 c.2992-2995delAAGA mutation is associated with instability and functional impairment of the encoded protein, provide further evidence of a breast cancer ^ related role for BRIP1. -
Inherited Bone Marrow Failure Syndrome (IBMFS) Testing
Lab Management Guidelines V2.0.2021 Inherited Bone Marrow Failure Syndrome (IBMFS) Testing MOL.TS.360.A v2.0.2021 Introduction Inherited bone marrow failure syndrome (IBMFS) genetic testing is addressed by this guideline. Procedures addressed The inclusion of any procedure code in this table does not imply that the code is under management or requires prior authorization. Refer to the specific Health Plan's procedure code list for management requirements. Procedures addressed by this Procedure codes guideline IBMFS Multigene panel 81479 What are inherited bone marrow failure syndromes Definition Bone marrow failure (BMF) is the inability of the bone marrow to produce a sufficient quantity of functional blood cells to meet physiologic demands.1 BMF is typically classified into three categories, based on presumed etiology: inherited, secondary, or idiopathic.1 Inherited bone marrow failure syndromes (IBMFSs) are a group of genetically defined disorders that are characterized by BMF. Individuals presenting with aplastic anemia (AA), myelodysplastic syndrome (MDS), acute myeloid leukemia (AML), and chronic unexplained cytopenias should be evaluated for an IBMFS.1 Incidence "The incidence of inherited bone marrow failures accounts for 10% to 15% of marrow aplasia and 30% of pediatric bone marrow failure disorders with approximately 65 cases per million live births every year."2 Seventy-five percent of children with an IBMFS have an identifiable cause.2 ©2021 eviCore healthcare. All Rights Reserved. 1 of 17 400 Buckwalter Place Boulevard, Bluffton, SC 29910 (800) 918-8924 www.eviCore.com Lab Management Guidelines V2.0.2021 Symptoms While specific features may vary by each type of IBMFS, features that are present in most IBMFSs include bone marrow failure with single or multi-lineage cytopenia. -
A Mutation in the XPBIERCC3 DNA Repair Transcription Gene, Associated with Trichothiodystrophy
Am. J. Hum. Genet. 60:320-329, 1997 A Mutation in the XPBIERCC3 DNA Repair Transcription Gene, Associated with Trichothiodystrophy G. Weeda,' E. Eveno,2 1. Donker,' W. Vermeulen,' 0. Chevallier-Lagente,2 A. Tafeb,3 A. Stary,2 J. H. J. Hoeijmakers,1 M. Mezzina,2 and A. Sarasin2 'MGC-Department of Cell Biology and Genetics, Erasmus University, Rotterdam; 2Laboratory of Molecular Genetics, UPR 42 Institut Federatif CNRS-IFC1 -Institut de Recherches sur le Cancer, Vilejuif, France; and 'Unit6 de Dermatologie P6diatrique, Centre Hospitalier Universitaire, Groupe Pellegrin, Hopital des Enfants, Bordeaux Summary Introduction Trichothiodystrophy (TD1) is a rare, autosomal recessive disorder characterized by sulfur-deficient brittle hair and To counteract the deleterious effects of mutagenic and nails, mental retardation, impaired sexual development, and carcinogenic agents, all organisms are equipped with a ichthyosis. Photosensitivity has been reported in -50% of sophisticated network of DNA repair systems that is the cases, but no skin cancer is associated with TI). Virtu- essential for genetic stability. Nucleotide excision repair ally all photosensitive ID patients have a deficiency in (NER)-one of the most studied repair pathways-re- the nucleotide excision repair (NER) of UV-induced DNA moves a wide diversity of DNA lesions, including UV- damage that is indistinguishable from that of xeroderma induced lesions, in a multistep process (Hoeijmakers pigmentosum (XP) complementation group D (XP-D) pa- 1993). tients. DNA repair defects in XP-D are associated with two Two subpathways are recognized in NER: a rapid additional, quite different diseases; XP, a sun-sensitive and preferential repair of the transcribed strand of active cancer-prone repair disorder, and Cockayne syndrome (CS), genes ("transcription-coupled repair") and the less effi- a photosensitive condition characterized by physical and cient global genome repair process (Bohr 1991; Hana- mental retardation and wizened facial appearance. -
CCR PEDIATRIC ONCOLOGY SERIES CCR Pediatric Oncology Series Recommendations for Surveillance for Children with Leukemia-Predisposing Conditions Christopher C
CCR PEDIATRIC ONCOLOGY SERIES CCR Pediatric Oncology Series Recommendations for Surveillance for Children with Leukemia-Predisposing Conditions Christopher C. Porter1, Todd E. Druley2, Ayelet Erez3, Roland P. Kuiper4, Kenan Onel5, Joshua D. Schiffman6, Kami Wolfe Schneider7, Sarah R. Scollon8, Hamish S. Scott9, Louise C. Strong10, Michael F. Walsh11, and Kim E. Nichols12 Abstract Leukemia, the most common childhood cancer, has long been patients. The panel recognized that for several conditions, recognized to occasionally run in families. The first clues about routine monitoring with complete blood counts and bone the genetic mechanisms underlying familial leukemia emerged marrow evaluations is essential to identify disease evolution in 1990 when Li-Fraumeni syndrome was linked to TP53 muta- and enable early intervention with allogeneic hematopoietic tions. Since this discovery, many other genes associated with stem cell transplantation. However, for others, less intensive hereditary predisposition to leukemia have been identified. surveillance may be considered. Because few reports describ- Although several of these disorders also predispose individuals ing the efficacy of surveillance exist, the recommendations to solid tumors, certain conditions exist in which individuals are derived by this panel are based on opinion, and local expe- specifically at increased risk to develop myelodysplastic syn- rience and will need to be revised over time. The development drome (MDS) and/or acute leukemia. The increasing identifica- of registries and clinical trials is urgently needed to enhance tion of affected individuals and families has raised questions understanding of the natural history of the leukemia-predis- around the efficacy, timing, and optimal methods of surveil- posing conditions, such that these surveillance recommenda- lance. -
Identification of Novel Pathogenic MSH2 Mutation and New DNA Repair Genes Variants: Investigation of a Tunisian Lynch Syndrome F
Jaballah‑Gabteni et al. J Transl Med (2019) 17:212 https://doi.org/10.1186/s12967‑019‑1961‑9 Journal of Translational Medicine RESEARCH Open Access Identifcation of novel pathogenic MSH2 mutation and new DNA repair genes variants: investigation of a Tunisian Lynch syndrome family with discordant twins Amira Jaballah‑Gabteni1,3* , Haifa Tounsi1,3, Maria Kabbage1,3, Yosr Hamdi3, Sahar Elouej3,4, Ines Ben Ayed1,3, Mouna Medhioub2, Moufda Mahmoudi2, Hamza Dallali3, Hamza Yaiche1,3, Nadia Ben Jemii1,3, Affa Maaloul1, Najla Mezghani1,3, Sonia Abdelhak3, Lamine Hamzaoui2, Mousaddak Azzouz2 and Samir Boubaker1,3 Abstract Background: Lynch syndrome (LS) is a highly penetrant inherited cancer predisposition syndrome, characterized by autosomal dominant inheritance and germline mutations in DNA mismatch repair genes. Despite several genetic variations that have been identifed in various populations, the penetrance is highly variable and the reasons for this have not been fully elucidated. This study investigates whether, besides pathogenic mutations, environment and low penetrance genetic risk factors may result in phenotype modifcation in a Tunisian LS family. Patients and methods: A Tunisian family with strong colorectal cancer (CRC) history that fulfll the Amsterdam I criteria for the diagnosis of Lynch syndrome was proposed for oncogenetic counseling. The index case was a man, diagnosed at the age of 33 years with CRC. He has a monozygotic twin diagnosed at the age of 35 years with crohn disease. Forty‑seven years‑old was the onset age of his paternal uncle withCRC. An immunohistochemical (IHC) labe‑ ling for the four proteins (MLH1, MSH2, MSH6 and PMS2) of the MisMatchRepair (MMR) system was performed for the index case. -
RAD51 Paralogs Promote Genomic Integrity and Chemoresistance in Cancer by Facilitating Homologous Recombination
122 Editorial Page 1 of 6 RAD51 paralogs promote genomic integrity and chemoresistance in cancer by facilitating homologous recombination Janelle Louise Harris, Andrea Rabellino, Kum Kum Khanna QIMR Berghofer Medical Research Institute, Brisbane, Queensland, Australia Correspondence to: Kum Kum Khanna. QIMR Berghofer Medical Research Institute, Brisbane, Queensland, Australia. Email: [email protected]. Provenance: This is an invited Editorial commissioned by Section Editor Yazhou He, MD (Institute of Genetics and Molecular Medicine, Western General Hospital/Usher Institute of Population Health Sciences, University of Edinburgh, Edinburgh, UK). Comment on: Chen X, Li Y, Ouyang T, et al. Associations between RAD51D germline mutations and breast cancer risk and survival in BRCA1/2- negative breast cancers. Ann Oncol 2018;29:2046-51. Submitted Nov 30, 2018. Accepted for publication Dec 10, 2018. doi: 10.21037/atm.2018.12.30 View this article at: http://dx.doi.org/10.21037/atm.2018.12.30 Cancer is a major health burden, however advances in early a loss of function mutation in the DDR gene RAD51D, diagnosis and improved surgery and therapeutic options while such mutations were detected in 0.1% of the healthy have improved outcomes over the past several decades. population. For example, RAD51D mutation carriers had Nevertheless, many radiological and chemotherapeutic higher grade cancers and early relapse compared to wild treatments yield severe side effects, while relapse and types, implicating RAD51D loss as rare but penetrant breast subsequent outgrowth of treatment resistant tumours cancer mutation associated with more aggressive disease. is common. The majority of cancer treatments rely on During cancer progression the disruption of normal inhibition of cancer cells pro-growth signalling, blocking DDR drives accumulation of additional genetic defects that proliferation or inducing DNA damage. -
Association of Smoking and XPG, CYP1A1, OGG1, ERCC5, ERCC1, MMP2, and MMP9 Gene Polymorphisms with the Early Detection and Occurrence of Laryngeal Squamous Carcinoma
Journal of Cancer 2018, Vol. 9 968 Ivyspring International Publisher Journal of Cancer 2018; 9(6): 968-977. doi: 10.7150/jca.22841 Research Paper Association of Smoking and XPG, CYP1A1, OGG1, ERCC5, ERCC1, MMP2, and MMP9 Gene Polymorphisms with the early detection and occurrence of Laryngeal Squamous Carcinoma Yi Zhu1, Luo Guo2, ShengZi Wang1,Qun Yu3, JianXiong Lu3 1. Department of Radiation Oncology of Shanghai Eye and ENT Hospital of Fudan University, Shanghai, 200031, China 2. Department of Experiment centre of Shanghai Eye and ENT Hospital of Fudan University, Shanghai,200031, China 3. Department of TianPing health service centre of Shanghai,Shanghai,200031,China Corresponding author: ShengZi Wang, Mail address: Department of Radiation Oncology of Shanghai, Eye and ENT Hospital of Fudan University, Shanghai 200031, China. Telephone: 8618917761761; Email: [email protected] © Ivyspring International Publisher. This is an open access article distributed under the terms of the Creative Commons Attribution (CC BY-NC) license (https://creativecommons.org/licenses/by-nc/4.0/). See http://ivyspring.com/terms for full terms and conditions. Received: 2017.09.16; Accepted: 2018.01.16; Published: 2018.02.28 Abstract A total of 200 smoking-related laryngeal carcinoma patients with pathology confirmation from the Eye and ENT Hospital and 190 high-risk smokers were included in a survey. All of the participants had a smoking index greater than 400 (cigarettes/day*year.) We obtained data on clinical and baseline characteristics, and peripheral blood was obtained and subjected to DNA extraction to analyse the correlation between smoking and the occurrence of laryngeal carcinoma. We selected candidate genes and SNP fragments that were found to be closely associated with smoking-related tumours in preliminary studies.