Fish Functional Traits Are Affected by Hydrodynamics at Small Spatial Scale
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Phylogeny of the Damselfishes (Pomacentridae) and Patterns of Asymmetrical Diversification in Body Size and Feeding Ecology
bioRxiv preprint doi: https://doi.org/10.1101/2021.02.07.430149; this version posted February 8, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Phylogeny of the damselfishes (Pomacentridae) and patterns of asymmetrical diversification in body size and feeding ecology Charlene L. McCord a, W. James Cooper b, Chloe M. Nash c, d & Mark W. Westneat c, d a California State University Dominguez Hills, College of Natural and Behavioral Sciences, 1000 E. Victoria Street, Carson, CA 90747 b Western Washington University, Department of Biology and Program in Marine and Coastal Science, 516 High Street, Bellingham, WA 98225 c University of Chicago, Department of Organismal Biology and Anatomy, and Committee on Evolutionary Biology, 1027 E. 57th St, Chicago IL, 60637, USA d Field Museum of Natural History, Division of Fishes, 1400 S. Lake Shore Dr., Chicago, IL 60605 Corresponding author: Mark W. Westneat [email protected] Journal: PLoS One Keywords: Pomacentridae, phylogenetics, body size, diversification, evolution, ecotype Abstract The damselfishes (family Pomacentridae) inhabit near-shore communities in tropical and temperature oceans as one of the major lineages with ecological and economic importance for coral reef fish assemblages. Our understanding of their evolutionary ecology, morphology and function has often been advanced by increasingly detailed and accurate molecular phylogenies. Here we present the next stage of multi-locus, molecular phylogenetics for the group based on analysis of 12 nuclear and mitochondrial gene sequences from 330 of the 422 damselfish species. -
Sharkcam Fishes
SharkCam Fishes A Guide to Nekton at Frying Pan Tower By Erin J. Burge, Christopher E. O’Brien, and jon-newbie 1 Table of Contents Identification Images Species Profiles Additional Info Index Trevor Mendelow, designer of SharkCam, on August 31, 2014, the day of the original SharkCam installation. SharkCam Fishes. A Guide to Nekton at Frying Pan Tower. 5th edition by Erin J. Burge, Christopher E. O’Brien, and jon-newbie is licensed under the Creative Commons Attribution-Noncommercial 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc/4.0/. For questions related to this guide or its usage contact Erin Burge. The suggested citation for this guide is: Burge EJ, CE O’Brien and jon-newbie. 2020. SharkCam Fishes. A Guide to Nekton at Frying Pan Tower. 5th edition. Los Angeles: Explore.org Ocean Frontiers. 201 pp. Available online http://explore.org/live-cams/player/shark-cam. Guide version 5.0. 24 February 2020. 2 Table of Contents Identification Images Species Profiles Additional Info Index TABLE OF CONTENTS SILVERY FISHES (23) ........................... 47 African Pompano ......................................... 48 FOREWORD AND INTRODUCTION .............. 6 Crevalle Jack ................................................. 49 IDENTIFICATION IMAGES ...................... 10 Permit .......................................................... 50 Sharks and Rays ........................................ 10 Almaco Jack ................................................. 51 Illustrations of SharkCam -
Chromis Katoi, a New Species of Damselfish from the Izu Islands, Japan, with a Key to Species in the Chromis Notata Species Complex (Perciforms: Pomacentridae)
aqua, International Journal of Ichthyology Chromis katoi, a new species of damselfish from the Izu Islands, Japan, with a key to species in the Chromis notata species complex (Perciforms: Pomacentridae) Hiroki Iwatsubo1 and Hiroyuki Motomura2* 1) Kagoshima Museum of Aquatic Biodiversity, Kagoshima MS Building, 11-21 Nishisengoku, Kagoshima 892-0847, Japan 2) Kagoshima University Museum, 1-21-30 Korimoto, Kagoshima 890-0065, Japan *Corresponding author: E-mail: [email protected] Received: 09 May 2018 – Accepted: 31 May 2018 Keywords Schwanzflosse bei erwachsenen Tieren (im Gegensatz zu Western Pacific Ocean, damselfishes, new species, einem breiten, waagerechten Band, das beide Lappen der Chromis kennensis, Chromis notata, Chromis pura, Chromis Schwanzflosse bei notata aufweisen), die gelbe Farbe des yamakawai, Chromis westaustralis ganzen Körpers bei Jungtieren (im Gegensatz zum gräulichen bis bräunlichen Farbton während des ganzen Abstract Lebens bei notata); außerdem hat die neue Art weniger we- Chromis katoi n. sp., a new damselfish (Pomacentridae) iche Rückenflossenstrahlen, mehr röhrenförmige Seiten- belonging to the Chromis notata species complex, is de- linien-Schuppen, Brustflossenstrahlen und Kiemen- scribed on the basis of 11 specimens collected at a depth of blättchen sowie eine größere Rumpftiefe und Prä- 18 m off Hachijo Island, Izu Islands, Japan. The new Analflossenlänge. Angefügt ist ein Bestimmungsschlüssel species is similar to C. notata in having an indistinct white für die Arten des C.-notata-Komplexes. blotch at the end of the dorsal-fin base, and 4 or 5 and 11 or 12 scale rows above and below the lateral line, respec- Sommario tively, but differs in having the spinous portion of the dor- Chromis katoi n. -
Trait Decoupling Promotes Evolutionary Diversification of The
Trait decoupling promotes evolutionary diversification of the trophic and acoustic system of damselfishes rspb.royalsocietypublishing.org Bruno Fre´de´rich1, Damien Olivier1, Glenn Litsios2,3, Michael E. Alfaro4 and Eric Parmentier1 1Laboratoire de Morphologie Fonctionnelle et Evolutive, Applied and Fundamental Fish Research Center, Universite´ de Lie`ge, 4000 Lie`ge, Belgium 2Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland Research 3Swiss Institute of Bioinformatics, Ge´nopode, Quartier Sorge, 1015 Lausanne, Switzerland 4Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095, USA Cite this article: Fre´de´rich B, Olivier D, Litsios G, Alfaro ME, Parmentier E. 2014 Trait decou- Trait decoupling, wherein evolutionary release of constraints permits special- pling promotes evolutionary diversification of ization of formerly integrated structures, represents a major conceptual the trophic and acoustic system of damsel- framework for interpreting patterns of organismal diversity. However, few fishes. Proc. R. Soc. B 281: 20141047. empirical tests of this hypothesis exist. A central prediction, that the tempo of morphological evolution and ecological diversification should increase http://dx.doi.org/10.1098/rspb.2014.1047 following decoupling events, remains inadequately tested. In damselfishes (Pomacentridae), a ceratomandibular ligament links the hyoid bar and lower jaws, coupling two main morphofunctional units directly involved in both feeding and sound production. Here, we test the decoupling hypothesis Received: 2 May 2014 by examining the evolutionary consequences of the loss of the ceratomandib- Accepted: 9 June 2014 ular ligament in multiple damselfish lineages. As predicted, we find that rates of morphological evolution of trophic structures increased following the loss of the ligament. -
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CICHLIFORMES: Cichlidae (part 3) · 1 The ETYFish Project © Christopher Scharpf and Kenneth J. Lazara COMMENTS: v. 6.0 - 30 April 2021 Order CICHLIFORMES (part 3 of 8) Family CICHLIDAE Cichlids (part 3 of 7) Subfamily Pseudocrenilabrinae African Cichlids (Haplochromis through Konia) Haplochromis Hilgendorf 1888 haplo-, simple, proposed as a subgenus of Chromis with unnotched teeth (i.e., flattened and obliquely truncated teeth of H. obliquidens); Chromis, a name dating to Aristotle, possibly derived from chroemo (to neigh), referring to a drum (Sciaenidae) and its ability to make noise, later expanded to embrace cichlids, damselfishes, dottybacks and wrasses (all perch-like fishes once thought to be related), then beginning to be used in the names of African cichlid genera following Chromis (now Oreochromis) mossambicus Peters 1852 Haplochromis acidens Greenwood 1967 acies, sharp edge or point; dens, teeth, referring to its sharp, needle-like teeth Haplochromis adolphifrederici (Boulenger 1914) in honor explorer Adolf Friederich (1873-1969), Duke of Mecklenburg, leader of the Deutsche Zentral-Afrika Expedition (1907-1908), during which type was collected Haplochromis aelocephalus Greenwood 1959 aiolos, shifting, changing, variable; cephalus, head, referring to wide range of variation in head shape Haplochromis aeneocolor Greenwood 1973 aeneus, brazen, referring to “brassy appearance” or coloration of adult males, a possible double entendre (per Erwin Schraml) referring to both “dull bronze” color exhibited by some specimens and to what -
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Mediterranean Marine Science Vol. 15, 2014 A combined approach to assessing the conservation status of Cap des Trois Fourches as a potential MPA: is there a shortage of MPAs in the southern Mediterranean? ESPINOSA F. Laboratorio de Biología Marina, Universidad de Sevilla, Avda. Reina Mercedes 6, 41012, Sevilla NAVARRO-BARRANCO C. Biología Marina, Universidad de Sevilla, Avda. Reina Mercedes 6, 41012, Sevilla GONZÁLEZ A. de Biología Marina, Universidad de Sevilla, Avda. Reina Mercedes 6, 41012, Sevilla MAESTRE M. Laboratorio de Biología Marina, Universidad de Sevilla, Avda. Reina Mercedes 6, 41012, Sevilla GARCÍA-GÓMEZ J. Laboratorio de Biología Marina, Universidad de Sevilla, Avda. Reina Mercedes 6, 41012, Sevilla BENHOUSSA A. Faculty of Sciences, University Mohammed V- Agdal, 4 Avenue Ibn Battouta, B.P. 1014 RP, 10106 Rabat Agdal LIMAM A. RAC/SPA, Boulevard du Leader Yasser Arafat,B.P. 337-1080, Tunis-Cedex BAZAIRI H. Faculty of Sciences, University Mohammed V- Agdal, 4 Avenue Ibn Battouta, B.P. 1014 RP, 10106 Rabat Agdal https://doi.org/10.12681/mms.775 Copyright © 2014 http://epublishing.ekt.gr | e-Publisher: EKT | Downloaded at 30/09/2021 20:40:26 | To cite this article: ESPINOSA, F., NAVARRO-BARRANCO, C., GONZÁLEZ, A., MAESTRE, M., GARCÍA-GÓMEZ, J., BENHOUSSA, A., LIMAM, A., & BAZAIRI, H. (2014). A combined approach to assessing the conservation status of Cap des Trois Fourches as a potential MPA: is there a shortage of MPAs in the southern Mediterranean?. Mediterranean Marine Science, 15(3), 654-666. doi:https://doi.org/10.12681/mms.775 http://epublishing.ekt.gr | e-Publisher: EKT | Downloaded at 30/09/2021 20:40:27 | Research Article Mediterranean Marine Science Indexed in WoS (Web of Science, ISI Thomson) and SCOPUS The journal is available on line at http://www.medit-mar-sc.net Doi: http://dx.doi.org/10.12681/mms.775 A combined approach to assessing the conservation status of Cap des Trois Fourches as a potential MPA: is there a shortage of MPAs in the Southern Mediterranean? F. -
Pomacentridae): Structural and Expression Variation in Opsin Genes
Molecular Ecology (2017) 26, 1323–1342 doi: 10.1111/mec.13968 Why UV vision and red vision are important for damselfish (Pomacentridae): structural and expression variation in opsin genes SARA M. STIEB,*† FABIO CORTESI,*† LORENZ SUEESS,* KAREN L. CARLETON,‡ WALTER SALZBURGER† and N. J. MARSHALL* *Sensory Neurobiology Group, Queensland Brain Institute, The University of Queensland, Brisbane, QLD 4072, Australia, †Zoological Institute, University of Basel, Basel 4051, Switzerland, ‡Department of Biology, The University of Maryland, College Park, MD 20742, USA Abstract Coral reefs belong to the most diverse ecosystems on our planet. The diversity in col- oration and lifestyles of coral reef fishes makes them a particularly promising system to study the role of visual communication and adaptation. Here, we investigated the evolution of visual pigment genes (opsins) in damselfish (Pomacentridae) and exam- ined whether structural and expression variation of opsins can be linked to ecology. Using DNA sequence data of a phylogenetically representative set of 31 damselfish species, we show that all but one visual opsin are evolving under positive selection. In addition, selection on opsin tuning sites, including cases of divergent, parallel, conver- gent and reversed evolution, has been strong throughout the radiation of damselfish, emphasizing the importance of visual tuning for this group. The highest functional variation in opsin protein sequences was observed in the short- followed by the long- wavelength end of the visual spectrum. Comparative gene expression analyses of a subset of the same species revealed that with SWS1, RH2B and RH2A always being expressed, damselfish use an overall short-wavelength shifted expression profile. Inter- estingly, not only did all species express SWS1 – a UV-sensitive opsin – and possess UV-transmitting lenses, most species also feature UV-reflective body parts. -
Latitudinal Gradients in Atlantic Reef Fish Communities: Trophic Structure and Spatial Use Patterns
Journal of Fish Biology (2004) 64, 1680–1699 doi:10.1111/j.1095-8649.2004.00428.x,availableonlineathttp://www.blackwell-synergy.com Latitudinal gradients in Atlantic reef fish communities: trophic structure and spatial use patterns S. R. FLOETER*†,C.E.L.FERREIRA‡, A. DOMINICI-AROSEMENA§ AND I. R. ZALMON* *Lab. de Cieˆncias Ambientais, Universidade Estadual do Norte Fluminense, Av. Alberto Lamego, 2000, Campos dos Goytacazes, RJ, 28 013-600, Brasil, ‡Depto. de Oceanografia, IEAPM, Rua Kioto 253, Arraial do Cabo, RJ, 28 930-000, Brasil and §Center for Tropical Marine Ecology (ZMT), Fahrenheitstrasse 6, 28 359, Bremen, Germany (Received 1 August 2003, Accepted 19 March 2004) Trophic strategies and spatial use habits were investigated in reef fish communities. The results supported the hypothesis of differential use of food resources among tropical and higher latitude reef fishes, i.e. the number of species and relative abundance of fishes relying on relatively low-quality food significantly decreased from tropical to temperate latitudes. The species : genus ratio of low-quality food consumers increased toward the tropics, and was higher than the overall ratio considering all fishes in the assemblages. This supports the view that higher speciation rates occurred among this guild of fishes in warm waters. It was also demonstrated that density of herbivorous fishes (the dominant group relying on low-quality food resources) in the western Atlantic decreased from tropical to temperate latitudes. Spatial use and mobility varied with latitude and consequently reef type and complexity. Fishes with small-size home ranges predominated on tropical coral reefs. # 2004 The Fisheries Society of the British Isles Key words: community structure; herbivory; latitudinal gradient; macroecology; reef fishes. -
28. Annexe 2 Haplochromis
Description de ‘Haplochromis’ snoeksi ‘Haplochromis’ snoeksi (Perciformes: Cichlidae) a new species from the Inkisi River basin, Lower Congo Soleil WAMUINI L. *, ** Emmanuel VREVEN *** and Pierre VANDEWALLE** * I.S.P. Mbanza-Ngungu, Département de Biologie, B.P. 127 - Mbanza-Ngungu, Democratic Republic of Congo (DRC). E-mail: [email protected] ** Université de Liège, Faculté des Sciences, Laboratoire de Morphologie fonctionnelle et évolutive, B-4000 Liège, Belgium. E-mail: [email protected] *** Royal Museum for Central Africa, Vertebrate Section, Ichthyology, B-3080 Tervuren, Belgium; E-mail: [email protected] Abstract ‘Haplochromis’ snoeksi , new species, is described from a single locality, Ngeba village on the Ngeba /Ngufu River, a right bank affluent of the Inkisi River basin (Lower Congo; Democratic Republic of Congo). The species is distinguished from its riverine Congo River basin congeners by the following unique combination of characters: thorax partially naked, i.e. without small scales; 16 scales around caudal peduncle; and an upper lateral line with 23 scales. Résumé Une nouvelle espèce, ‘ Haplochromis ’ snoeksi , est décrite d’une seule localité, le village Ngeba sur la rivière Ngeba/Ngufu, un affluent de la rive droite de l’Inkisi (Bas-Congo; République Démocratique du Congo). Cette espèce se distingue des ses congénères des rivières de la province ichtyologiques du bassin du Congo par la combinaison des caractères suivants : un espace thoracique partiellement nu, c'est-à-dire dépourvu d’écailles, 16 écailles autour du pédoncule caudal et une ligne latéral supérieure avec 23 écailles. Introduction The family Cichlidae is characterized by a single nostril on either side of the head, a lateral line which is divided in two parts and a single continuous dorsal fin which has a spiny anterior and soft posterior fin-ray part (Snoeks, 1994; Nelson, 2006; Stiassny et al ., 2008). -
Andrew David Dorka Cobián Rojas Felicia Drummond Alain García Rodríguez
CUBA’S MESOPHOTIC CORAL REEFS Fish Photo Identification Guide ANDREW DAVID DORKA COBIÁN ROJAS FELICIA DRUMMOND ALAIN GARCÍA RODRÍGUEZ Edited by: John K. Reed Stephanie Farrington CUBA’S MESOPHOTIC CORAL REEFS Fish Photo Identification Guide ANDREW DAVID DORKA COBIÁN ROJAS FELICIA DRUMMOND ALAIN GARCÍA RODRÍGUEZ Edited by: John K. Reed Stephanie Farrington ACKNOWLEDGMENTS This research was supported by the NOAA Office of Ocean Exploration and Research under award number NA14OAR4320260 to the Cooperative Institute for Ocean Exploration, Research and Technology (CIOERT) at Harbor Branch Oceanographic Institute-Florida Atlantic University (HBOI-FAU), and by the NOAA Pacific Marine Environmental Laboratory under award number NA150AR4320064 to the Cooperative Institute for Marine and Atmospheric Studies (CIMAS) at the University of Miami. This expedition was conducted in support of the Joint Statement between the United States of America and the Republic of Cuba on Cooperation on Environmental Protection (November 24, 2015) and the Memorandum of Understanding between the United States National Oceanic and Atmospheric Administration, the U.S. National Park Service, and Cuba’s National Center for Protected Areas. We give special thanks to Carlos Díaz Maza (Director of the National Center of Protected Areas) and Ulises Fernández Gomez (International Relations Officer, Ministry of Science, Technology and Environment; CITMA) for assistance in securing the necessary permits to conduct the expedition and for their tremendous hospitality and logistical support in Cuba. We thank the Captain and crew of the University of Miami R/V F.G. Walton Smith and ROV operators Lance Horn and Jason White, University of North Carolina at Wilmington (UNCW-CIOERT), Undersea Vehicle Program for their excellent work at sea during the expedition. -
Mediterranean Sea
OVERVIEW OF THE CONSERVATION STATUS OF THE MARINE FISHES OF THE MEDITERRANEAN SEA Compiled by Dania Abdul Malak, Suzanne R. Livingstone, David Pollard, Beth A. Polidoro, Annabelle Cuttelod, Michel Bariche, Murat Bilecenoglu, Kent E. Carpenter, Bruce B. Collette, Patrice Francour, Menachem Goren, Mohamed Hichem Kara, Enric Massutí, Costas Papaconstantinou and Leonardo Tunesi MEDITERRANEAN The IUCN Red List of Threatened Species™ – Regional Assessment OVERVIEW OF THE CONSERVATION STATUS OF THE MARINE FISHES OF THE MEDITERRANEAN SEA Compiled by Dania Abdul Malak, Suzanne R. Livingstone, David Pollard, Beth A. Polidoro, Annabelle Cuttelod, Michel Bariche, Murat Bilecenoglu, Kent E. Carpenter, Bruce B. Collette, Patrice Francour, Menachem Goren, Mohamed Hichem Kara, Enric Massutí, Costas Papaconstantinou and Leonardo Tunesi The IUCN Red List of Threatened Species™ – Regional Assessment Compilers: Dania Abdul Malak Mediterranean Species Programme, IUCN Centre for Mediterranean Cooperation, calle Marie Curie 22, 29590 Campanillas (Parque Tecnológico de Andalucía), Málaga, Spain Suzanne R. Livingstone Global Marine Species Assessment, Marine Biodiversity Unit, IUCN Species Programme, c/o Conservation International, Arlington, VA 22202, USA David Pollard Applied Marine Conservation Ecology, 7/86 Darling Street, Balmain East, New South Wales 2041, Australia; Research Associate, Department of Ichthyology, Australian Museum, Sydney, Australia Beth A. Polidoro Global Marine Species Assessment, Marine Biodiversity Unit, IUCN Species Programme, Old Dominion University, Norfolk, VA 23529, USA Annabelle Cuttelod Red List Unit, IUCN Species Programme, 219c Huntingdon Road, Cambridge CB3 0DL,UK Michel Bariche Biology Departement, American University of Beirut, Beirut, Lebanon Murat Bilecenoglu Department of Biology, Faculty of Arts and Sciences, Adnan Menderes University, 09010 Aydin, Turkey Kent E. Carpenter Global Marine Species Assessment, Marine Biodiversity Unit, IUCN Species Programme, Old Dominion University, Norfolk, VA 23529, USA Bruce B. -
Cymothoid (Crustacea, Isopoda) Records on Marine Fishes (Teleostei and Chondrichthyes) from Turkey
Bull. Eur. Ass. Fish Pathol., 29(2) 2009, 51 Cymothoid (Crustacea, Isopoda) Records on Marine Fishes (Teleostei and Chondrichthyes) from Turkey A. Öktener1*, J.P. Trilles 2, A. Alaş3 and K. Solak4 1 Istanbul Provencial Directorate of Agriculture, Directorate of Control, Kumkapı Fish Auction Hall, Aquaculture Office, TR-34130, Kumkapı, İstanbul, Turkey; 2 UMR 5119 (CNRS-UM2-IFREMER), Équipe Adaptation écophysiologique et ontogenèse, Université de Montpellier 2, CC. 092, Place E. Bataillon, 34095 Montpellier cedex O5, France; 3 Department of Science, Education Faculty, Aksaray University, TR-68100 Aksaray, Turkey; 4 Department of Biology, Education Faculty, Gazi University, TR-06100 Ankara, Turkey. Abstract Nine teleostean and one chondrichthyan species are identified as new hosts for six cymothoid isopods, Nerocila bivittata (Risso, 1816), Ceratothoa steindachneri Koelbel, 1878, Ceratothoa oestroides (Risso, 1826), Livoneca sinuata Koelbel, 1878, Anilocra physodes L., 1758 and Mothocya taurica (Czerniavsky, 1868). Six of these hosts are reported for the first time. They are:Helicolenus dactylopterus dactylopterus, Argentina sphyraena, Belone belone, Chromis chromis, Conger conger, Trisopterus minutus. Others are new hosts in Turkey. Introduction Crustacean ectoparasites on marine fish are & Öktener 2004; Ateş et al. 2006; Kirkim et al. diverse. Many species of fish are parasitized 2008). Those are Anilocra physodes (L., 1758), by cymothoids (Crustacea, Isopoda, Anilocra frontalis Milne Edwards, 1840, Nerocila Cymothoidae). These parasitic isopods are bivittata (Risso, 1816), Nerocila maculata (Milne blood feeding; several species settle in the Edwards, 1840), Nerocila orbignyi (Guérin- buccal cavity of fish, others live in the gill Meneville, 1828-1832), Ceratothoa oestroides chamber or on the body surface including (Risso, 1826), Ceratothoa parallela (Otto, 1828), the fins.