First Captive Breeding Program for the Endangered Pyrenean Sculpin (Cottus Hispaniolensis Bacescu-Master, 1964)
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A Solution for Universal Classification of Species Based on Genomic
Hindawi Publishing Corporation International Journal of Plant Genomics Volume 2007, Article ID 27894, 8 pages doi:10.1155/2007/27894 Research Article A Solution for Universal Classification of Species Based on Genomic DNA Mariko Kouduka,1 Daisuke Sato,1 Manabu Komori,1 Motohiro Kikuchi,2 Kiyoshi Miyamoto,3 Akinori Kosaku,3 Mohammed Naimuddin,1, 4 Atsushi Matsuoka,5 and Koichi Nishigaki1, 6 1 Department of Functional Materials Science, Saitama University, Saitama, Japan 2 Chitose Salmon Aquarium Chitose, Youth Educational Foundation, Chitose, Hokkaido, Japan 3 Institute of Medical Science, Dokkyo Medical University, Tochigi, Japan 4 Biol. Res. and Functions, National Inst. AIST, Tsukuba, Ibaraki, Japan 5 Department of Geology, Niigata University, Niigata, Japan 6 Rational Evolutionary Design of Advanced Biomolecules, Saitama Small Enterprise Promotion Corporation, SKIP City, Saitama, Japan Received 22 July 2006; Revised 8 October 2006; Accepted 8 October 2006 Recommended by Cheng-Cang Wu Traditionally, organisms have been classified on the basis of their phenotype. Recently, genotype-based classification has become possible through the development of sequencing technology. However, it is still difficult to apply sequencing approaches to the analysis of a large number of species due to the cost and labor. In most biological fields, the analysis of complex systems compris- ing various species has become an important theme, demanding an effective method for handling a vast number of species. In this paper, we have demonstrated, using plants, fish, and insects, that genome profiling, a compact technology for genome analysis, can classify organisms universally. Surprisingly, in all three of the domains of organisms tested, the phylogenetic trees generated from the phenotype topologically matched completely those generated from the genotype. -
Cottus Poecilopus Heckel, 1836, in the River Javorin- Ka, the Tatra
Oecologia Montana 2018, Cottus poecilopus Heckel, 1836, in the river Javorin- 27, 21-26 ka, the Tatra mountains, Slovakia M. JANIGA, Jr. In Tatranská Javorina under Muráň mountain, a small fish nursery was built by Christian Kraft von Institute of High Mountain Biology University of Hohenlohe around 1930. The most comprehensive Žilina, Tatranská Javorina 7, SK-059 56, Slovakia; studies on fish from the Tatra mountains were writ- e-mail:: [email protected] ten by professor Václav Dyk (1957; 1961), Dyk and Dyková (1964a,b; 1965), who studied altitudinal distribution of fish, describing the highest points where fish were found. His studies on fish were likely the most complex studies of their kind during that period. Along with his wife Sylvia, who illus- Abstract. This study focuses on the Cottus poe- trated his studies, they published the first realistic cilopus from the river Javorinka in the north-east studies on fish from the Tatra mountains including High Tatra mountains, Slovakia. The movement the river Javorinka (Dyk and Dyková 1964a). Feri- and residence of 75 Alpine bullhead in the river anc (1948) published the first Slovakian nomenclature were monitored and carefully recorded using GPS of fish in 1948. Eugen K. Balon (1964; 1966) was the coordinates. A map representing their location in next famous ichthyologist who became a recognised the river was generated. This data was collected in expert in the fish fauna of the streams of the Tatra the spring and summer of 2016 and in the autumn mountains, the river Poprad, and various high moun- of 2017. Body length and body weight of 67 Alpine tain lakes. -
Trophic Relationships in Dutch Reservoirs Recently Invaded by Ponto-Caspian Species: Insights from Fish Trends and Stable Isotope Analysis
Aquatic Invasions (2019) Volume 14, Issue 2: 280–298 CORRECTED PROOF Research Article Trophic relationships in Dutch reservoirs recently invaded by Ponto-Caspian species: insights from fish trends and stable isotope analysis Yvon J.M. Verstijnen1,*, Esther C.H.E.T. Lucassen1,2, Marinus van der Gaag3, Arco J. Wagenvoort5, Henk Castelijns4, Henk A.M. Ketelaars4, Gerard van der Velde3,6,7 and Alfons J.P. Smolders1,2 1B-WARE Research Centre, Radboud University, Toernooiveld 1, 6525 ED Nijmegen, The Netherlands 2Department of Aquatic Ecology and Environmental Biology, Institute for Water and Wetland Research, Radboud University, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands 3Department of Animal Ecology and Physiology, Institute for Water and Wetland Research, Radboud University, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands 4Evides Water Company, PO Box 4472, 3006 AL Rotterdam, The Netherlands 5AqWa, Voorstad 45, 4461 RT Goes, The Netherlands 6Naturalis Biodiversity Center, P.O. 9517, 2300 RA Leiden, The Netherlands 7Netherlands Centre of Expertise on Exotic Species (NEC-E). Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands Author e-mails: [email protected] (YJMV), [email protected] (ECHETL), [email protected] (MG), [email protected], (AJW), [email protected] (HC), [email protected] (HAMK), [email protected] (VG), [email protected] (AJPS) *Corresponding author Citation: Verstijnen YJM, Lucassen ECHET, van der Gaag M, Wagenvoort AJ, Abstract Castelijns H, Ketelaars HAM, van der Velde G, Smolders AJP (2019) Trophic Invasive species can directly or indirectly alter (a)biotic characteristics of ecosystems, relationships in Dutch reservoirs recently resulting in changing energy flows through the food web. -
The Iberian Lynx Lynx Pardinus Conservation Breeding Program A
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Digital.CSIC The Iberian lynx Lynx pardinus Conservation Breeding Program A. VARGAS1, I. SA´ NCHEZ2, F. MARTI´NEZ1, A. RIVAS1, J. A. GODOY3, E. ROLDA´ N4, M. A. SIMO´ N5, R. SERRA6, MaJ. PE´ REZ7, C. ENSEN˜ AT8, M. DELIBES3, M. AYMERICH9, 10 11 A. SLIWA & U. BREITENMOSER 1Centro de Cr´ıa de Lince Ibe´rico El Acebuche, Parque Nacional de Don˜ ana, Huelva, Spain, 2Zoobota´ nico de Jerez, Ca´ diz, Spain, 3Don˜ ana Biological Station, CSIC, Sevilla, Spain, 4National Museum of Natural Science, CSIC, Madrid, Spain, 5Environmental Council, Andalusian Government, Jae´ n, Spain, 6Investigac¸a˜ o Veterina´ ria Independente, Lisbon, Portugal, 7Centro de Cr´ıa en Cautividad de Lince Ibe´rico La Olivilla, Jaen, Spain, 8Parc Zoolo´ gic, Barcelona, Spain, 9Direccio´ n General para la Biodiversidad, Ministerio de Medio Ambiente, Madrid, Spain, 10Cologne Zoo, Cologne 50735, Germany, and 11IUCN Cat Specialist Group, Institute of Veterinary Virology, University of Bern, Bern, Switzerland E-mail: [email protected] The Iberian Lynx Conservation Breeding Program fol- INTRODUCTION lows a multidisciplinary approach, integrated within the National Strategy for the Conservation of the Iberian lynx, which is carried out in cooperation with national, Iberian lynx Lynx pardinus wild populations regional and international institutions. The main goals of have undergone a constant regression through- the ex situ conservation programme are to: (1) maintain a out the last century. The decline has been genetically and demographically managed captive popu- especially abrupt in the last 20 years, with more lation; (2) create new Iberian lynx Lynx pardinus free- ranging populations through re-introduction. -
Steps in Becoming Your Own Plant Breeder Mark P
NCRPIS Conference Papers, Posters and North Central Regional Plant Introduction Station Presentations 1988 Steps in becoming your own plant breeder Mark P. Widrlechner United States Department of Agriculture, [email protected] Follow this and additional works at: http://lib.dr.iastate.edu/ncrpis_conf Part of the Agricultural Science Commons, Plant Biology Commons, and the Plant Breeding and Genetics Commons The ompc lete bibliographic information for this item can be found at http://lib.dr.iastate.edu/ ncrpis_conf/16. For information on how to cite this item, please visit http://lib.dr.iastate.edu/ howtocite.html. This Conference Proceeding is brought to you for free and open access by the North Central Regional Plant Introduction Station at Iowa State University Digital Repository. It has been accepted for inclusion in NCRPIS Conference Papers, Posters and Presentations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. 46 STEPS IN BECOMING YOUR OWN PLANT BREEDER Mark P. Widrlechner USDA·ARS, Nort:h Central Regional Plant Introduction Station Iowa State University, Ames, IA 50011 As herb growers and marketers, all ~f us enjoy working with plants and 'their useful products. Many of us are involved wit:h growing herbs from seed or cuttings. There probably aren't quite so many of us who produce our own seed and of those who do produce seed there are even fewer who do so using soma method of controlled pollination. ·To be a plant breeder, first you need to learn how to produce quality seed under controlled pollination conditions for the species you want to improve. -
Management and Breeding of Birds of Paradise (Family Paradisaeidae) at the Al Wabra Wildlife Preservation
Management and breeding of Birds of Paradise (family Paradisaeidae) at the Al Wabra Wildlife Preservation. By Richard Switzer Bird Curator, Al Wabra Wildlife Preservation. Presentation for Aviary Congress Singapore, November 2008 Introduction to Birds of Paradise in the Wild Taxonomy The family Paradisaeidae is in the order Passeriformes. In the past decade since the publication of Frith and Beehler (1998), the taxonomy of the family Paradisaeidae has been re-evaluated considerably. Frith and Beehler (1998) listed 42 species in 17 genera. However, the monotypic genus Macgregoria (MacGregor’s Bird of Paradise) has been re-classified in the family Meliphagidae (Honeyeaters). Similarly, 3 species in 2 genera (Cnemophilus and Loboparadisea) – formerly described as the “Wide-gaped Birds of Paradise” – have been re-classified as members of the family Melanocharitidae (Berrypeckers and Longbills) (Cracraft and Feinstein 2000). Additionally the two genera of Sicklebills (Epimachus and Drepanornis) are now considered to be combined as the one genus Epimachus. These changes reduce the total number of genera in the family Paradisaeidae to 13. However, despite the elimination of the 4 species mentioned above, 3 species have been newly described – Berlepsch's Parotia (P. berlepschi), Eastern or Helen’s Parotia (P. helenae) and the Eastern or Growling Riflebird (P. intercedens). The Berlepsch’s Parotia was once considered to be a subspecies of the Carola's Parotia. It was previously known only from four female specimens, discovered in 1985. It was rediscovered during a Conservation International expedition in 2005 and was photographed for the first time. The Eastern Parotia, also known as Helena's Parotia, is sometimes considered to be a subspecies of Lawes's Parotia, but differs in the male’s frontal crest and the female's dorsal plumage colours. -
THE CASE AGAINST Marine Mammals in Captivity Authors: Naomi A
s l a m m a y t T i M S N v I i A e G t A n i p E S r a A C a C E H n T M i THE CASE AGAINST Marine Mammals in Captivity The Humane Society of the United State s/ World Society for the Protection of Animals 2009 1 1 1 2 0 A M , n o t s o g B r o . 1 a 0 s 2 u - e a t i p s u S w , t e e r t S h t u o S 9 8 THE CASE AGAINST Marine Mammals in Captivity Authors: Naomi A. Rose, E.C.M. Parsons, and Richard Farinato, 4th edition Editors: Naomi A. Rose and Debra Firmani, 4th edition ©2009 The Humane Society of the United States and the World Society for the Protection of Animals. All rights reserved. ©2008 The HSUS. All rights reserved. Printed on recycled paper, acid free and elemental chlorine free, with soy-based ink. Cover: ©iStockphoto.com/Ying Ying Wong Overview n the debate over marine mammals in captivity, the of the natural environment. The truth is that marine mammals have evolved physically and behaviorally to survive these rigors. public display industry maintains that marine mammal For example, nearly every kind of marine mammal, from sea lion Iexhibits serve a valuable conservation function, people to dolphin, travels large distances daily in a search for food. In learn important information from seeing live animals, and captivity, natural feeding and foraging patterns are completely lost. -
Error-Robust Nature of Genome Profiling Applied for Clustering of Species Demonstrated by Computer Simulation
World Academy of Science, Engineering and Technology International Journal of Bioengineering and Life Sciences Vol:1, No:5, 2007 Error-Robust Nature of Genome Profiling Applied for Clustering of Species Demonstrated by Computer Simulation Shamim Ahmed and Koichi Nishigaki factors [4], and the insufficiency in the number of experts [5]. Abstract—Genome profiling (GP), a genotype based technology, Recently, genotype-based approach has become possible which exploits random PCR and temperature gradient gel owing to the development of sequencing technology. electrophoresis, has been successful in identification/classification of organisms. In this technology, spiddos (Species identification dots) However, it is still difficult to apply sequencing approaches to and PaSS (Pattern similarity score) were employed for measuring the the analysis of a large number of species due to logistic closeness (or distance) between genomes. Based on the closeness reason. In most biological fields, the analysis of complex (PaSS), we can buildup phylogenetic trees of the organisms. We systems comprising various species has been an important noticed that the topology of the tree is rather robust against the experimental fluctuation conveyed by spiddos. This fact was theme, demanding an effective method for handling a vast confirmed quantitatively in this study by computer-simulation, number of species. A realistic solution to these problems has providing the limit of the reliability of this highly powerful been to characterize organisms according to the sequence of methodology. As a result, we could demonstrate the effectiveness of their small subunit ribosomal RNA (16S/18S rRNA), an the GP approach for identification/classification of organisms. approach that has been applied to various organisms, initiated Keywords—Fluctuation, Genome profiling (GP), Pattern by Woese and his collaborators [6]~[8]. -
Sustainability of Threatened Species Displayed in Public Aquaria, with a Case Study of Australian 1 Sharks and Rays 2 3 Kathryn
https://link.springer.com/article/10.1007/s11160-017-9501-2 1 PREPRINT 1 Sustainability of threatened species displayed in public aquaria, with a case study of Australian 2 sharks and rays 3 4 Kathryn A. Buckley • David A. Crook • Richard D. Pillans • Liam Smith • Peter M. Kyne 5 6 7 K.A. Buckley • D.A. Crook • P.M. Kyne 8 Research Institute for the Environment and Livelihoods, Charles Darwin University, Darwin, NT 0909, 9 Australia 10 R.D. Pillans 11 CSIRO Oceans and Atmosphere, 41 Boggo Road, Dutton Park, QLD 4102, Australia 12 L. Smith 13 BehaviourWorks Australia, Monash Sustainable Development Institute, Building 74, Monash University, 14 Wellington Road, Clayton, VIC 3168, Australia 15 Corresponding author: K.A. Buckley, Research Institute for the Environment and Livelihoods, Charles Darwin 16 University, Darwin, NT 0909, Australia; Telephone: +61 4 2917 4554; Fax: +61 8 8946 7720; e-mail: 17 [email protected] 18 https://www.nespmarine.edu.au/document/sustainability-threatened-species-displayed-public-aquaria-case-study-australian-sharks-and https://link.springer.com/article/10.1007/s11160-017-9501-2 2 PREPRINT 19 Abstract Zoos and public aquaria exhibit numerous threatened species globally, and in the modern context of 20 these institutions as conservation hubs, it is crucial that displays are ecologically sustainable. Elasmobranchs 21 (sharks and rays) are of particular conservation concern and a higher proportion of threatened species are 22 exhibited than any other assessed vertebrate group. Many of these lack sustainable captive populations, so 23 comprehensive assessments of sustainability may be needed to support the management of future harvests and 24 safeguard wild populations. -
Dean Oz/Μ: ;Z: Date
The evolutionary history of reproductive strategies in sculpins of the subfamily oligocottinae Item Type Thesis Authors Buser, Thaddaeus J. Download date 26/09/2021 18:39:58 Link to Item http://hdl.handle.net/11122/4549 THE EVOLUTIONARY HISTORY OF REPRODUCTIVE STRATEGIES IN SCULPINS OF THE SUBFAMILY OLIGOCOTTINAE By Thaddaeus J. Buser RECOMMENDED: Dr. Anne Beaudreau Dr. J. Andres Lopez Advisory Committee Chair Dr. Shannon Atkinson Fisheries Division Graduate Program Chair APPROVED: Dr. Michael Castellini ·. John Eichel erger Dean oZ/µ:_;z: Date THE EVOLUTIONARY HISTORY OF REPRODUCTIVE STRATEGIES IN SCULPINS OF THE SUBFAMILY OLIGOCOTTINAE A THESIS Presented to the Faculty of the University of Alaska Fairbanks in Partial Fulfillment of the Requirements for the Degree of Title Page MASTER OF SCIENCE By Thaddaeus J. Buser, B.Sc. Fairbanks, Alaska May 2014 v Abstract The sculpin subfamily Oligocottinae is a group of 17 nearshore species and is noteworthy for the fact that it contains both intertidal and subtidal species, copulating and non- copulating species, and many species with very broad geographic ranges. These factors, as well as the consistency with which the constituent genera have been grouped together historically, make the Oligocottinae an ideal group for the study of the evolution of a reproductive mode known as internal gamete association (IGA), which is unique to sculpins. I conducted a phylogenetic study of the oligocottine sculpins based on an extensive molecular dataset consisting of DNA sequences from eight genomic regions. From the variability present in those sequences, I inferred phylogenetic relationships using parsimony, maximum likelihood, and Bayesian inference. Results of these phylogenetic analyses show that some historical taxonomy and classifications require revision to align taxonomy with evolutionary relatedness. -
Captive Breeding Genetics and Reintroduction Success
Biological Conservation 142 (2009) 2915–2922 Contents lists available at ScienceDirect Biological Conservation journal homepage: www.elsevier.com/locate/biocon Captive breeding genetics and reintroduction success Alexandre Robert * UMR 7204 MNHN-CNRS-UPMC, Conservation des Espèces, Restauration et Suivi des Populations, Muséum National d’Histoire Naturelle, CRBPO, 55, Rue Buffon, 75005 Paris, France article info abstract Article history: Since threatened species are generally incapable of surviving in their current, altered natural environ- Received 6 May 2009 ments, many conservation programs require to preserve them through ex situ conservation techniques Received in revised form 8 July 2009 prior to their reintroduction into the wild. Captive breeding provides species with a benign and stable Accepted 23 July 2009 environment but has the side effect to induce significant evolutionary changes in ways that compromise Available online 26 August 2009 fitness in natural environments. I developed a model integrating both demographic and genetic processes to simulate a captive-wild population system. The model was used to examine the effect of the relaxation Keywords: of selection in captivity on the viability of the reintroduced population, in interaction with the reintro- Reintroduction duction method and various species characteristics. Results indicate that the duration of the reintroduc- Selection relaxation Population viability analysis tion project (i.e., time from the foundation of the captive population to the last release event) is the most Mutational meltdown important determinant of reintroduction success. Success is generally maximized for intermediate project duration allowing to release a sufficient number of individuals, while maintaining the number of generations of relaxed selection to an acceptable level. -
Identification of Priority Areas for the Conservation of Stream Fish Assemblages: Implications for River Management in France A
Identification of Priority Areas for the Conservation of Stream Fish Assemblages: Implications for River Management in France A. Maire, P. Laffaille, J.F. Maire, L. Buisson To cite this version: A. Maire, P. Laffaille, J.F. Maire, L. Buisson. Identification of Priority Areas for the Conservation of Stream Fish Assemblages: Implications for River Management in France. River Research and Applications, Wiley, 2016, 33 (4), pp.524-537. 10.1002/rra.3107. hal-01426354 HAL Id: hal-01426354 https://hal.archives-ouvertes.fr/hal-01426354 Submitted on 2 Jul 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License IDENTIFICATION OF PRIORITY AREAS FOR THE CONSERVATION OF STREAM FISH ASSEMBLAGES: IMPLICATIONS FOR RIVER MANAGEMENT IN FRANCE A. MAIREa*,†, P. LAFFAILLEb,c, J.-F. MAIREd AND L. BUISSONb,e a Irstea; UR HYAX, Pôle Onema-Irstea Hydroécologie des plans d’eau; Centre d’Aix-en-Provence, Aix-en-Provence, France b CNRS; UMR 5245 EcoLab, (Laboratoire Ecologie Fonctionnelle et Environnement), Toulouse, France c Université de Toulouse, INP, UPS; EcoLab; ENSAT, Castanet Tolosan, France d ONERA, The French Aerospace Lab Composites Department, Châtillon, France e Université de Toulouse, INP, UPS; EcoLab, Toulouse, France ABSTRACT Financial and human resources allocated to biodiversity conservation are often limited, making it impossible to protect all natural places, and priority areas for protection must be identified.