Seed-Coat Microsculpturing and Its Systematic Application in Isatis (Brassicaceae) and Allied Genera in Iran Hamid Moazzenia, Shahin Zarrea,Ã, Ihsan A
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Isatis Tinctoria L. (Woad): a Review of Its Botany, Ethnobotanical Uses, Phytochemistry, Biological Activities, and Biotechnological Studies
plants Review Isatis tinctoria L. (Woad): A Review of Its Botany, Ethnobotanical Uses, Phytochemistry, Biological Activities, and Biotechnological Studies Jasmine Speranza 1,2, Natalizia Miceli 2,*, Maria Fernanda Taviano 2 , Salvatore Ragusa 3 , Inga Kwiecie ´n 4, Agnieszka Szopa 4 and Halina Ekiert 4 1 Foundation “Prof. Antonio Imbesi”, University of Messina, Piazza Pugliatti 1, 98122 Messina, Italy; [email protected] 2 Department of Chemical, Biological, Pharmaceutical and Environmental Sciences, University of Messina, Viale Palatucci, 98168 Messina, Italy; [email protected] 3 Department of Health Sciences, University ‘Magna Graecia’ of Catanzaro, V. Europa, IT-88100 Catanzaro, Italy; [email protected] 4 Chair and Department of Pharmaceutical Botany, Jagiellonian University, Medical College, Medyczna 9, 30-688 Kraków, Poland; [email protected] (I.K.); [email protected] (A.S.); [email protected] (H.E.) * Correspondence: [email protected] Received: 10 February 2020; Accepted: 25 February 2020; Published: 1 March 2020 Abstract: Isatis tinctoria L. (Brassicaceae), which is commonly known as woad, is a species with an ancient and well-documented history as an indigo dye and medicinal plant. Currently, I. tinctoria is utilized more often as medicinal remedy and also as a cosmetic ingredient. In 2011, I. tinctoria root was accepted in the official European phytotherapy by introducing its monograph in the European Pharmacopoeia. The biological properties of raw material have been known from Traditional Chinese Medicine (TCM). Over recent decades, I. tinctoria has been investigated both from a phytochemical and a biological point of view. The modern in vitro and in vivo scientific studies proved anti-inflammatory, anti-tumour, antimicrobial, antiviral, analgesic, and antioxidant activities. -
Phylogeny and Multiple Independent Whole‐Genome Duplication Events
RESEARCH ARTICLE Phylogeny and multiple independent whole-genome duplication events in the Brassicales Makenzie E. Mabry1,11 , Julia M. Brose1, Paul D. Blischak2, Brittany Sutherland2, Wade T. Dismukes1, Christopher A. Bottoms3, Patrick P. Edger4, Jacob D. Washburn5, Hong An1, Jocelyn C. Hall6, Michael R. McKain7, Ihsan Al-Shehbaz8, Michael S. Barker2, M. Eric Schranz9, Gavin C. Conant10, and J. Chris Pires1,11 Manuscript received 10 December 2019; revision accepted 5 May PREMISE: Whole-genome duplications (WGDs) are prevalent throughout the evolutionary 2020. history of plants. For example, dozens of WGDs have been phylogenetically localized 1 Division of Biological Sciences and Christopher S. Bond Life across the order Brassicales, specifically, within the family Brassicaceae. A WGD event has Sciences Center, University of Missouri, Columbia, Missouri 65211, also been identified in the Cleomaceae, the sister family to Brassicaceae, yet its placement, USA as well as that of WGDs in other families in the order, remains unclear. 2 Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, Arizona 85719, USA METHODS: Phylo-transcriptomic data were generated and used to infer a nuclear 3 Informatics Research Core Facility and Christopher S. Bond Life phylogeny for 74 Brassicales taxa. Genome survey sequencing was also performed on 66 Sciences Center, University of Missouri, Columbia, Missouri 65211, of those taxa to infer a chloroplast phylogeny. These phylogenies were used to assess and USA confirm relationships among the major families of the Brassicales and within Brassicaceae. 4 Department of Horticulture, Michigan State University, East Lansing, Michigan 48824, USA Multiple WGD inference methods were then used to assess the placement of WGDs on the 5 Plant Genetics Research Unit, USDA-ARS, Columbia, Missouri nuclear phylogeny. -
ANATOMICAL CHARACTERISTICS and ECOLOGICAL TRENDS in the XYLEM and PHLOEM of BRASSICACEAE and RESEDACAE Fritz Hans Schweingruber
IAWA Journal, Vol. 27 (4), 2006: 419–442 ANATOMICAL CHARACTERISTICS AND ECOLOGICAL TRENDS IN THE XYLEM AND PHLOEM OF BRASSICACEAE AND RESEDACAE Fritz Hans Schweingruber Swiss Federal Research Institute for Forest, Snow and Landscape, CH-8903 Birmensdorf, Switzerland (= corresponding address) SUMMARY The xylem and phloem of Brassicaceae (116 and 82 species respectively) and the xylem of Resedaceae (8 species) from arid, subtropical and tem- perate regions in Western Europe and North America is described and ana- lysed, compared with taxonomic classifications, and assigned to their ecological range. The xylem of different life forms (herbaceous plants, dwarf shrubs and shrubs) of both families consists of libriform fibres and short, narrow vessels that are 20–50 μm in diameter and have alter- nate vestured pits and simple perforations. The axial parenchyma is para- tracheal and, in most species, the ray cells are exclusively upright or square. Very few Brassicaceae species have helical thickening on the vessel walls, and crystals in fibres. The xylem anatomy of Resedaceae is in general very similar to that of the Brassicaceae. Vestured pits occur only in one species of Resedaceae. Brassicaceae show clear ecological trends: annual rings are usually dis- tinct, except in arid and subtropical lowland zones; semi-ring-porosity decreases from the alpine zone to the hill zone at lower altitude. Plants with numerous narrow vessels are mainly found in the alpine zone. Xylem without rays is mainly present in plants growing in the Alps, both at low and high altitudes. The reaction wood of the Brassicaceae consists primarily of thick-walled fibres, whereas that of the Resedaceae contains gelatinous fibres. -
Key to the Brassicaceae (Cruciferae) of Canada and Alaska
Key to the Brassicaceae (Cruciferae) of Canada and Alaska Gerald A. Mulligan Biological Resources Program, Eastern Cereal and Oilseed Research Centre, Agriculture and Agri-Food Canada, Wm. Saunders Building, Central Experimental Farm, Ottawa, Ontario, KIA 0C6, Canada Acknowledgments This key benefitted substantially from information contained in the many publications, on the systematics of members of the family Brassicaceae (Cruciferae), by the late Dr. Reed C. Rollins, especially his comprehensive treatment, The Cruciferae of Continental North America, Stanford University Press, Stanford, California, in 1993. My own long interest in plants of this family was encouraged and fostered by my mentor and long-time friend Dr. Clarence Frankton. I am also indebted to Ardath Francis, who borrowed, from many herbaria, critical specimens for me to study, and who provided me with a printed manuscript. I also thank Stephen Darbyshire, William J. Cody and Dr. Suzanne Warwick for their assistance. Abbreviations AK Alaska YT Yukon NT-M Northwest Territories - Mackenzie District N-K Nunavut - Keewatin District N-F Nunavut - Franklin District NF Newfoundland PE Prince Edward Island NS Nova Scotia NB New Brunswick PQ Québec ON Ontario MB Manitoba SK Saskatchewan AB Alberta BC British Columbia 4 Key to the Genera of Brassicaceae in Canada and Alaska 1. Pods less than 3 times longer than wide, variously shaped (silicles) .............................. 2 1. Pods greater than 3 times, often many times, longer than wide; more or less linear or narrowly oblong (siliques) .......................................................................... 38 2. Silicles compressed contrary to the plane of the septum; angustiseptate (Coronopus, Physaria,Teesdalia, Iberis, Myagrum, Isatis, Cardaria, Lepidium, Thlaspi, Armoracia, Capsella, Lesquerella, Hutchinsia) .............................................. -
Exploration of Business Ideas of the Woad Plant (Isatis Tinctoria)
INTO THE BLUE: EXPLORATION OF BUSINESS IDEAS OF THE WOAD PLANT (ISATIS TINCTORIA) Dissertation/Master Thesis (MA) MoDule CoDe: 4106 MoDule LeaDer: Dr. Alan Butler Author: KonraD Freiherr v. Thüngen 10341765 1. Supervisor: Carol Zhang 2. Supervisor: FeDerico Topolansky - 1 - ABSTRACT 1 ABSTRACT Sustainable ecological proDucts anD alternatives to conventional proDucts are becoming continuously more important. This work investigates Different possibilities to proDuce anD market proDucts from the plant woaD. The main focus is on the attituDes, expectations, success factors anD obstacles of woaD experts who have come into contact with the plant in Different ways, from science to plant cultivation anD business experience. These were first summariseD anD categorised on the basis of existing literature anD then checkeD with the help of guiDeline-supporteD expert interviews. A lot of results from the literature coulD be reconfirmeD. However, some new finDings from the interviews allow conclusions to be Drawn about further possibilities, challenges, problems anD approaches to solutions. FIGURE 1: ISATIS TINCTORIA L. Lindman C.A.M., (1905). Isatis Tinctoria Illustration Platte 213 - 2 - TABLE OF CONTENT 2 TABLE OF CONTENT 1 Abstract ............................................................................................................. - 2 - 2 Table of Content ................................................................................................ - 3 - 2.1 List of Abbreviations ................................................................................... -
Vascular Plant Species Checklist and Rare Plants of Fossil Butte National
Vascular Plant Species Checklist And Rare Plants of Fossil Butte National Monument Physaria condensata by Jane Dorn from Dorn & Dorn (1980) Prepared for the National Park Service Northern Colorado Plateau Network By Walter Fertig Wyoming Natural Diversity Database University of Wyoming PO Box 3381, Laramie, WY 82071 9 October 2000 Table of Contents Page # Introduction . 3 Study Area . 3 Methods . 5 Results . 5 Summary of Plant Inventory Work at Fossil Butte National Monument . 5 Flora of Fossil Butte National Monument . 7 Rare Plants of Fossil Butte National Monument . 7 Other Noteworthy Plant Species from Fossil Butte National Monument . 8 Discussion and Recommendations . 8 Acknowledgments . 10 Literature Cited . 11 Figures, Tables, and Appendices Figure 1. Fossil Butte National Monument . 4 Figure 2. Increase in Number of Plant Species Recorded at Fossil Butte National Monument, 1973-2000 . 9 Table 1. Annotated Checklist of the Vascular Plant Flora of Fossil Butte National Monument . 13 Table 2. Rejected Plant Taxa . 32 Table 3. Potential Vascular Plants of Fossil Butte National Monument . 35 Appendix A. Rare Plants of Fossil Butte National Monument . 41 2 INTRODUCTION The National Park Service established Fossil Butte National Monument in October 1972 to preserve significant deposits of fossilized freshwater fish, aquatic organisms, and plants from the Eocene-age Green River Formation. In addition to fossils, the Monument also preserves a mosaic of 12 high desert and montane foothills vegetation types (Dorn et al. 1984; Jones 1993) and over 600 species of vertebrates and vascular plants (Beetle and Marlow 1974; Rado 1976, Clark 1977, Dorn et al. 1984; Kyte 2000). From a conservation perspective, Fossil Butte National Monument is especially significant because it is one of only two managed areas in the basins of southwestern Wyoming to be permanently protected and managed with an emphasis on maintaining biological processes (Merrill et al. -
A Chromosome-Scale Genome Assembly of Isatis Indigotica, an Important Medicinal Plant Used in Traditional Chinese Medicine an Isatis Genome
Kang et al. Horticulture Research (2020) 7:18 Horticulture Research https://doi.org/10.1038/s41438-020-0240-5 www.nature.com/hortres ARTICLE Open Access A chromosome-scale genome assembly of Isatis indigotica, an important medicinal plant used in traditional Chinese medicine An Isatis genome Minghui Kang1, Haolin Wu1,QiaoYang1,LiHuang1,QuanjunHu1,TaoMa1,ZaiyunLi2,1 and Jianquan Liu 1,3 Abstract Isatis indigotica (2n = 14) is an important medicinal plant in China. Its dried leaves and roots (called Isatidis Folium and Isatidis Radix, respectively) are broadly used in traditional Chinese medicine for curing diseases caused by bacteria and viruses such as influenza and viral pneumonia. Various classes of compounds isolated from this species have been identified as effective ingredients. Previous studies based on transcriptomes revealed only a few candidate genes for the biosynthesis of these active compounds in this medicinal plant. Here, we report a high-quality chromosome-scale genome assembly of I. indigotica with a total size of 293.88 Mb and scaffold N50 = 36.16 Mb using single-molecule real-time long reads and high-throughput chromosome conformation capture techniques. We annotated 30,323 high- confidence protein-coding genes. Based on homolog searching and functional annotations, we identified many candidate genes involved in the biosynthesis of main active components such as indoles, terpenoids, and phenylpropanoids. In addition, we found that some key enzyme-coding gene families related to the biosynthesis of 1234567890():,; 1234567890():,; 1234567890():,; 1234567890():,; these components were expanded due to tandem duplications, which likely drove the production of these major active compounds and explained why I. -
Checklist of Vascular Plants of the Southern Rocky Mountain Region
Checklist of Vascular Plants of the Southern Rocky Mountain Region (VERSION 3) NEIL SNOW Herbarium Pacificum Bernice P. Bishop Museum 1525 Bernice Street Honolulu, HI 96817 [email protected] Suggested citation: Snow, N. 2009. Checklist of Vascular Plants of the Southern Rocky Mountain Region (Version 3). 316 pp. Retrievable from the Colorado Native Plant Society (http://www.conps.org/plant_lists.html). The author retains the rights irrespective of its electronic posting. Please circulate freely. 1 Snow, N. January 2009. Checklist of Vascular Plants of the Southern Rocky Mountain Region. (Version 3). Dedication To all who work on behalf of the conservation of species and ecosystems. Abbreviated Table of Contents Fern Allies and Ferns.........................................................................................................12 Gymnopserms ....................................................................................................................19 Angiosperms ......................................................................................................................21 Amaranthaceae ............................................................................................................23 Apiaceae ......................................................................................................................31 Asteraceae....................................................................................................................38 Boraginaceae ...............................................................................................................98 -
Downloaded from NCBI (Table S2)
bioRxiv preprint doi: https://doi.org/10.1101/2020.06.15.153296; this version posted June 19, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. TITLE Surprising amount of stasis in repetitive genome content across the Brassicales RUNNING HEADER Repetitive elements in the Brassicales AUTHORS *Aleksandra Beric Donald Danforth Plant Science Center, St. Louis, Missouri 63132 Division of Plant Sciences, University of Missouri, Columbia, Missouri 65211 *Makenzie E. Mabry Division of Biological Sciences and Bond Life Sciences Center University of Missouri, Columbia, Missouri 65211 Alex E. Harkess Auburn University, Department of Crop, Soil, and Environmental Sciences, Auburn, AL 36849 HudsonAlpha Institute for Biotechnology, Huntsville, Alabama 35806 M. Eric Schranz Wageningen University and Research, Wageningen, Netherlands Gavin C. Conant Bioinformatics Research Center, Program in Genetics and Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina 27695 Patrick P. Edger Department of Horticulture Department of Ecology, Evolutionary Biology and Behavior Michigan State University, East Lansing, Michigan 48824 Blake C. Meyers Donald Danforth Plant Science Center, St. Louis, Missouri 63132 Division of Plant Sciences, University of Missouri, Columbia, Missouri 65211 J. Chris Pires Division of Biological Sciences and Bond Life Sciences Center University of Missouri, Columbia, Missouri 65211 Email: [email protected] *indicates co-first authors 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.06.15.153296; this version posted June 19, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Report of a Working Group on Medicinal and Aromatic Plants
Report of a Working Group on Medicinal and Aromatic Plants First Meeting, 12–14 September 2002, Gozd Martuljek, Slovenia D. Baricevic,v v J. Bernáth, L. Maggioni and E. Lipman, compilers <www.futureharvest.org> IPGRI is a Future Harvest Centre supported by the Consultative Group on International Agricultural Research (CGIAR) European Cooperative Programme for Crop Genetic Report of a Working Resources Networks ECP GR Group on Medicinal and Aromatic Plants First Meeting, 12–14 September 2002, Gozd Martuljek, Slovenia D. Baricevic,v v J. Bernáth, L. Maggioni and E. Lipman, compilers ii WORKING GROUP ON MEDICINAL AND AROMATIC PLANTS: FIRST MEETING The International Plant Genetic Resources Institute (IPGRI) is an independent international scientific organization that seeks to advance the conservation and use of plant genetic diversity for the well-being of present and future generations. It is one of 15 Future Harvest Centres supported by the Consultative Group on International Agricultural Research (CGIAR), an association of public and private members who support efforts to mobilize cutting-edge science to reduce hunger and poverty, improve human nutrition and health, and protect the environment. IPGRI has its headquarters in Maccarese, near Rome, Italy, with offices in more than 20 other countries worldwide. The Institute operates through three programmes: (1) the Plant Genetic Resources Programme, (2) the CGIAR Genetic Resources Support Programme and (3) the International Network for the Improvement of Banana and Plantain (INIBAP). The -
Supporting Information
Supporting Information Beilstein et al. 10.1073/pnas.0909766107 SI Materials and Methods at the deepest node of the tree and 20.8 Mya for the most- Evaluation of Potential Fossil Calibrations. We searched the pa- derived node calibration (Table S3). leobotanical literature and identified 32 fossils assigned to All other fossils were used as minimum age constraints in r8s. Brassicales (Table S1). Only six (Akania americana, Akania pa- We calibrated two different nodes with the Akania fossils; the tagonica, Akania sp., Capparidoxylon holleisii, Dressiantha bi- Akania americana/A. patagonica fossils are from a more recent carpellata, Thlaspi primaevum) could be placed confidently in deposit than Akania sp. (Table S1), and thus we used the Brassicales. A fossil was considered acceptable for use as an age younger date for these fossils to constrain the divergence of constraint only if its record included a clear citation with pho- Akania bidwillii and Bretschneidera sinensis. Akania sp. was used tographic evidence or accurate reproduction, fossil collection to constrain the node defined by A. bidwilli and Tropaeolum number, and morphological characters that support the pro- majus, which is deeper in the tree than the split constrained by A. posed placement. americana/A. patagonica. This strategy allowed us to use all Akania fossils as calibrations in the ndhF and combined analyses. Ultrametric Tree and Divergence Date Estimation. To calculate di- We lacked PHYA data for B. sinensis, precluding the use of vergence dates for Brassicales, we first inferred trees from plastid A. americana/A. patagonica as a calibration in PHYA analyses. ndhF and the nuclear locus phytochrome A (PHYA)datasepa- Morphological analysis of Capparidoxylon holleisii using Inside rately and then from combined ndhFandPHYA data (Table S2). -
“Non-Food Crops-To-Industry Schemes in EU27” WP 1 Task 1.4 Other
Crops2Industry Crops2Industry “Non-food Crops-to-Industry Schemes in EU27” WP 1 Task 1.4 Other specialty crops NATIONAL INSTITUTE FOR CHEMICAL PHARMACEUTICAL R&D BUCHAREST, ROMANIA Other specialty crops SUMMARY 1.Screening on wild and cultivated medicinal plants in EU 27 4 2.Quality characteristics of the raw material - good agricultural and collection practices (GACP) for medicinal plants 103 3.Selection of the most promising medicinal crops 109 Forecast of climate change and impact on crops development 109 Calendula officinalis L. (Asteraceae) Common names 112 Areas of origin and current cultivation 112 Plant anatomy 112 Growing conditions – input requirements 113 Logistics (harvesting – handling) until the industrial plant gate 114 Yields 114 Quality 115 Experimental pharmacology 116 Dosage 117 Other uses 117 Factors restricting growth and yielding potential 118 Research gaps 119 Information resources 119 Echinacea angustifolia DC (Asteraceae) Common names 120 Areas of origin and current cultivation 120 Plant anatomy 121 Growing conditions – input requirements 121 Logistics (harvesting – handling) until the industrial plant gate 123 Yields 124 Quality 124 Experimental pharmacology 126 Other uses 127 Factors restricting growth and yielding potential 128 Research gaps 129 Information resources 129 Lavandula angustifolia Mill. (Lamiaceae) Common names 130 Areas of origin and current cultivation 130 Plant anatomy 131 Growing conditions – input requirements 131 Logistics (harvesting – handling) until the industrial plant gate 133 Yields