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Algae & Marine Plants of Point Reyes
Algae & Marine Plants of Point Reyes Green Algae or Chlorophyta Genus/Species Common Name Acrosiphonia coalita Green rope, Tangled weed Blidingia minima Blidingia minima var. vexata Dwarf sea hair Bryopsis corticulans Cladophora columbiana Green tuft alga Codium fragile subsp. californicum Sea staghorn Codium setchellii Smooth spongy cushion, Green spongy cushion Trentepohlia aurea Ulva californica Ulva fenestrata Sea lettuce Ulva intestinalis Sea hair, Sea lettuce, Gutweed, Grass kelp Ulva linza Ulva taeniata Urospora sp. Brown Algae or Ochrophyta Genus/Species Common Name Alaria marginata Ribbon kelp, Winged kelp Analipus japonicus Fir branch seaweed, Sea fir Coilodesme californica Dactylosiphon bullosus Desmarestia herbacea Desmarestia latifrons Egregia menziesii Feather boa Fucus distichus Bladderwrack, Rockweed Haplogloia andersonii Anderson's gooey brown Laminaria setchellii Southern stiff-stiped kelp Laminaria sinclairii Leathesia marina Sea cauliflower Melanosiphon intestinalis Twisted sea tubes Nereocystis luetkeana Bull kelp, Bullwhip kelp, Bladder wrack, Edible kelp, Ribbon kelp Pelvetiopsis limitata Petalonia fascia False kelp Petrospongium rugosum Phaeostrophion irregulare Sand-scoured false kelp Pterygophora californica Woody-stemmed kelp, Stalked kelp, Walking kelp Ralfsia sp. Silvetia compressa Rockweed Stephanocystis osmundacea Page 1 of 4 Red Algae or Rhodophyta Genus/Species Common Name Ahnfeltia fastigiata Bushy Ahnfelt's seaweed Ahnfeltiopsis linearis Anisocladella pacifica Bangia sp. Bossiella dichotoma Bossiella -
The Marine Life Information Network® for Britain and Ireland (Marlin)
The Marine Life Information Network® for Britain and Ireland (MarLIN) Description, temporal variation, sensitivity and monitoring of important marine biotopes in Wales. Volume 1. Background to biotope research. Report to Cyngor Cefn Gwlad Cymru / Countryside Council for Wales Contract no. FC 73-023-255G Dr Harvey Tyler-Walters, Charlotte Marshall, & Dr Keith Hiscock With contributions from: Georgina Budd, Jacqueline Hill, Will Rayment and Angus Jackson DRAFT / FINAL REPORT January 2005 Reference: Tyler-Walters, H., Marshall, C., Hiscock, K., Hill, J.M., Budd, G.C., Rayment, W.J. & Jackson, A., 2005. Description, temporal variation, sensitivity and monitoring of important marine biotopes in Wales. Report to Cyngor Cefn Gwlad Cymru / Countryside Council for Wales from the Marine Life Information Network (MarLIN). Marine Biological Association of the UK, Plymouth. [CCW Contract no. FC 73-023-255G] Description, sensitivity and monitoring of important Welsh biotopes Background 2 Description, sensitivity and monitoring of important Welsh biotopes Background The Marine Life Information Network® for Britain and Ireland (MarLIN) Description, temporal variation, sensitivity and monitoring of important marine biotopes in Wales. Contents Executive summary ............................................................................................................................................5 Crynodeb gweithredol ........................................................................................................................................6 -
Palindromic Genes in the Linear Mitochondrial Genome of the Nonphotosynthetic Green Alga Polytomella Magna
GBE Palindromic Genes in the Linear Mitochondrial Genome of the Nonphotosynthetic Green Alga Polytomella magna David Roy Smith1,y,JimengHua2,3,y, John M. Archibald2, and Robert W. Lee3,* 1Department of Biology, University of Western Ontario, London, Ontario, Canada 2Department of Biochemistry and Molecular Biology, Canadian Institute for Advanced Research, Integrated Microbial Biodiversity Program, Dalhousie University, Halifax, Nova Scotia, Canada 3Department of Biology, Dalhousie University, Halifax, Nova Scotia, Canada *Corresponding author: E-mail: [email protected]. yThese authors contributed equally to this work. Accepted: August 8, 2013 Data deposition: Sequence data from this article have been deposited in GenBank under the accession KC733827. Abstract Organelle DNA is no stranger to palindromic repeats. But never has a mitochondrial or plastid genome been described in which every coding region is part of a distinct palindromic unit. While sequencing the mitochondrial DNA of the nonphotosynthetic green alga Polytomella magna, we uncovered precisely this type of genic arrangement. The P. magna mitochondrial genome is linear and made up entirely of palindromes, each containing 1–7 unique coding regions. Consequently, every gene in the genome is duplicated and in an inverted orientation relative to its partner. And when these palindromic genes are folded into putative stem-loops, their predicted translational start sites are often positioned in the apex of the loop. Gel electrophoresis results support the linear, 28-kb monomeric conformation of the P. magna mitochondrial genome. Analyses of other Polytomella taxa suggest that palindromic mitochondrial genes were present in the ancestor of the Polytomella lineage and lost or retained to various degrees in extant species. -
Development and Function of Plasmodesmata in Zygotes of Fucus Distichus
Botanica Marina 2015; 58(3): 229–238 Chikako Nagasato*, Makoto Terauchi, Atsuko Tanaka and Taizo Motomura Development and function of plasmodesmata in zygotes of Fucus distichus Abstract: Brown algae have plasmodesmata, tiny tubu- Introduction lar cytoplasmic channels connecting adjacent cells. The lumen of plasmodesmata is 10–20 nm wide, and it takes a Multicellular organisms such as animals, fungi, land simple form, without a desmotubule (the inner membrane plants, and brown algae have specific cellular connections. structure consisting of endoplasmic reticulum in the plas- These structures connect the cytoplasm of adjacent cells modesmata of green plants). In this study, we analyzed and provide a route for cell-cell communication. Green the ultrastructure and distribution of plasmodesmata plants, including land plants and certain species of green during development of Fucus distichus zygotes. The first algae (reviewed in Robards and Lucas 1990, Raven 1997), cytokinesis of zygotes in brown algae is not accompanied and brown algae (Bisalputra 1966) possess plasmodes- by plasmodesmata formation. As the germlings develop, mata. These are cytoplasmic canals that pass through the plasmodesmata are found in all septal cell walls, includ- septal cell wall and connect adjacent cells. Plasmodes- ing the first cell division plane. Plasmodesmata are formed mata in green plants and brown algae share similar char- de novo on the existing cell wall. Pit fields, which are clus- acteristics; however, plasmodesmata in brown algae lack ters of plasmodesmata, were observed in germlings with a desmotubule, a tubular strand of connecting endoplas- differentiated cell layers. Apart from the normal plas- mic reticulum (ER) that penetrates the plasmodesmata modesmata, these pit fields had branched plasmodes- of land plants (Terauchi et al. -
Lateral Gene Transfer of Anion-Conducting Channelrhodopsins Between Green Algae and Giant Viruses
bioRxiv preprint doi: https://doi.org/10.1101/2020.04.15.042127; this version posted April 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 5 Lateral gene transfer of anion-conducting channelrhodopsins between green algae and giant viruses Andrey Rozenberg 1,5, Johannes Oppermann 2,5, Jonas Wietek 2,3, Rodrigo Gaston Fernandez Lahore 2, Ruth-Anne Sandaa 4, Gunnar Bratbak 4, Peter Hegemann 2,6, and Oded 10 Béjà 1,6 1Faculty of Biology, Technion - Israel Institute of Technology, Haifa 32000, Israel. 2Institute for Biology, Experimental Biophysics, Humboldt-Universität zu Berlin, Invalidenstraße 42, Berlin 10115, Germany. 3Present address: Department of Neurobiology, Weizmann 15 Institute of Science, Rehovot 7610001, Israel. 4Department of Biological Sciences, University of Bergen, N-5020 Bergen, Norway. 5These authors contributed equally: Andrey Rozenberg, Johannes Oppermann. 6These authors jointly supervised this work: Peter Hegemann, Oded Béjà. e-mail: [email protected] ; [email protected] 20 ABSTRACT Channelrhodopsins (ChRs) are algal light-gated ion channels widely used as optogenetic tools for manipulating neuronal activity 1,2. Four ChR families are currently known. Green algal 3–5 and cryptophyte 6 cation-conducting ChRs (CCRs), cryptophyte anion-conducting ChRs (ACRs) 7, and the MerMAID ChRs 8. Here we 25 report the discovery of a new family of phylogenetically distinct ChRs encoded by marine giant viruses and acquired from their unicellular green algal prasinophyte hosts. -
Fucoid Algae As Model Organisms for Investigating Early Embryogenesis
Cah. Biol. Mar. (2001) 42 : 101-107 Fucoid algae as model organisms for investigating early embryogenesis Francois-Yves BOUGET1, Florence CORELLOU1 & Darryl L. KROPF2* 1 UMR 1931 CNRS-Goëmar, Station Biologique CNRS-INSU-Université Paris 6, Place Georges-Teissier, BP 74, F29682 Roscoff Cedex, France. 2 University of Utah, Department of Biology, 257 South 1400 East Salt Lake City, UT 84112-0840, USA E-mail: [email protected] * Author for correspondence Abstract: In the past few years, there have been exciting advances in our understanding of the mechanisms that control morphogenesis in fucoid embryos. In this article we review recent findings from our laboratories concerning 1) polarity establishment and expression in the zygote and 2) development of the zygote into a multicellular embryo. Résumé : Durant la dernière décennie, des avancées importantes ont été réalisées dans la compréhension des mécanismes qui contrôlent la morphogenèse des embryons de Fucacées. Dans cette revue, nous présentons les résultats récents obtenus dans nos laboratoires respectifs concernant 1) l’établissement de la polarité et son expression dans le zygote et 2) le déve- loppement du zygote en un embryon pluricellulaire. Keywords : Fucus, Pelvetia, embryogenesis, polarity. Introduction onto the substratum (rocks in the intertidal zone) where they attach tenaciously by a secreted adhesive (Vreeland et al., In addition to their importance as sources of natural 1993). Rapid adhesion is critical for survival because polymers and foods, many marine algae also provide zygotes that fail to attach are washed out to sea in the next excellent opportunities for investigating the mechanisms tidal cycle. As was first recognized over 100 years ago by that control development. -
Ascophyllum Nodosum) in Breiðafjörður, Iceland: Effects of Environmental Factors on Biomass and Plant Height
Rockweed (Ascophyllum nodosum) in Breiðafjörður, Iceland: Effects of environmental factors on biomass and plant height Lilja Gunnarsdóttir Faculty of Life and Environmental Sciences University of Iceland 2017 Rockweed (Ascophyllum nodosum) in Breiðafjörður, Iceland: Effects of environmental factors on biomass and plant height Lilja Gunnarsdóttir 60 ECTS thesis submitted in partial fulfillment of a Magister Scientiarum degree in Environment and Natural Resources MS Committee Mariana Lucia Tamayo Karl Gunnarsson Master’s Examiner Jörundur Svavarsson Faculty of Life and Environmental Science School of Engineering and Natural Sciences University of Iceland Reykjavik, December 2017 Rockweed (Ascophyllum nodosum) in Breiðafjörður, Iceland: Effects of environmental factors on biomass and plant height Rockweed in Breiðafjörður, Iceland 60 ECTS thesis submitted in partial fulfillment of a Magister Scientiarum degree in Environment and Natural Resources Copyright © 2017 Lilja Gunnarsdóttir All rights reserved Faculty of Life and Environmental Science School of Engineering and Natural Sciences University of Iceland Askja, Sturlugata 7 101, Reykjavik Iceland Telephone: 525 4000 Bibliographic information: Lilja Gunnarsdóttir, 2017, Rockweed (Ascophyllum nodosum) in Breiðafjörður, Iceland: Effects of environmental factors on biomass and plant height, Master’s thesis, Faculty of Life and Environmental Science, University of Iceland, pp. 48 Printing: Háskólaprent Reykjavik, Iceland, December 2017 Abstract During the Last Glacial Maximum (LGM) ice covered all rocky shores in eastern N-America while on the shores of Europe ice reached south of Ireland where rocky shores were found south of the glacier. After the LGM, rocky shores ecosystem development along European coasts was influenced mainly by movement of the littoral species in the wake of receding ice, while rocky shores of Iceland and NE-America were most likely colonized from N- Europe. -
Marlin Marine Information Network Information on the Species and Habitats Around the Coasts and Sea of the British Isles
MarLIN Marine Information Network Information on the species and habitats around the coasts and sea of the British Isles Fucus distichus and Fucus spiralis f. nana on extremely exposed upper shore rock MarLIN – Marine Life Information Network Marine Evidence–based Sensitivity Assessment (MarESA) Review Frances Perry & Jacqueline Hill 2015-10-15 A report from: The Marine Life Information Network, Marine Biological Association of the United Kingdom. Please note. This MarESA report is a dated version of the online review. Please refer to the website for the most up-to-date version [https://www.marlin.ac.uk/habitats/detail/234]. All terms and the MarESA methodology are outlined on the website (https://www.marlin.ac.uk) This review can be cited as: Perry, F. & Hill, J.M., 2015. [Fucus distichus] and [Fucus spiralis f. nana] on extremely exposed upper shore rock. In Tyler-Walters H. and Hiscock K. (eds) Marine Life Information Network: Biology and Sensitivity Key Information Reviews, [on-line]. Plymouth: Marine Biological Association of the United Kingdom. DOI https://dx.doi.org/10.17031/marlinhab.234.1 The information (TEXT ONLY) provided by the Marine Life Information Network (MarLIN) is licensed under a Creative Commons Attribution-Non-Commercial-Share Alike 2.0 UK: England & Wales License. Note that images and other media featured on this page are each governed by their own terms and conditions and they may or may not be available for reuse. Permissions beyond the scope of this license are available here. Based on a work at www.marlin.ac.uk (page left blank) Date: 2015-10-15 Fucus distichus and Fucus spiralis f. -
Coalescence De L'écologie Du Paysage Littoral Et De La Technologie
Université du Québec INRS (Eau, Terre et Environnement) Coalescence de l’écologie du paysage littoral et de la technologie aéroportée du LiDAR ubiquiste THÈSE DE DOCTORAT Présentée pour l‘obtention du grade de Philosophiae Doctor (Ph.D.) en Sciences de la Terre Par Antoine Collin 19 mai 2009 Jury d‘évaluation Présidente du jury et Monique Bernier examinatrice interne Institut National de la Recherche Scientifique - Eau Terre et Environnement, Québec, Canada Examinateur interne Pierre Francus Institut National de la Recherche Scientifique - Eau Terre et Environnement, Québec, Canada Examinatrice externe Marie-Josée Fortin Université de Toronto, Ontario, Canada Examinateur externe Georges Stora Université de la Méditerranée, Marseille, France Directeur de recherche Bernard Long Institut National de la Recherche Scientifique – Eau, Terre et Environnement, Québec, Canada Co-directeur de recherche Philippe Archambault Institut des Sciences de la Mer, Université du Québec à Rimouski, Rimouski, Canada © Droits réservés de Antoine Collin, 2009 v Imprimée sur papier 100% recyclé « Nous croyons regarder la nature et c'est la nature qui nous regarde et nous imprègne. » Christian Charrière, Extrait de Le maître d'âme. vi vii Résumé La frange littorale englobe un éventail d‘écosystèmes dont les services écologiques atteignent 17.447 billions de dollars U.S., ce qui constitue la moitié de la somme totale des capitaux naturels des écosystèmes de la Terre. L‘accroissement démographique couplé aux bouleversements provoqués par le réchauffement climatique, génèrent inexorablement de fortes pressions sur les processus écologiques côtiers. L‘écologie du paysage, née de la rencontre de l‘écologie et de l‘aménagement du territoire, est susceptible d‘apporter les fondements scientifiques nécessaires à la gestion durable de ces écosystèmes littoraux. -
EOAR-Raport Tech-Bibliothèque
Estuary and Gulf of St. Lawrence Marine EEEcosystemEcosystem OOOverviewOverview and AAAssessmentAssessment RRReportReport R. Dufour and P. Ouellet (editors) Science Branch Department of Fisheries and Oceans Maurice–Lamontagne Institut 850, route de la Mer Mont–Joli (Québec) G5H 3Z4 2007 Canadian Technical Report of Fisheries and Aquatic Sciences 2744E Canadian Technical Report of Fisheries and Aquatic Sciences Technical reports contain scientific and technical information that contributes to existing knowledge but which is not normally appropriate for primary literature. Technical reports are directed primarily toward a worldwide audience and have an international distribution. No restriction is placed on subject matter and the series reflects the broad interests and policies of Fisheries and Oceans Canada, namely, fisheries and aquatic sciences. Technical reports may be cited as full publications. The correct citation appears above the abstract of each report. Each report is abstracted in the data base Aquatic Sciences and Fisheries Abstracts . Technical reports are produced regionally but are numbered nationally. Requests for individual reports will be filled by the issuing establishment listed on the front cover and title page. Numbers 1-456 in this series were issued as Technical Reports of the Fisheries Research Board of Canada. Numbers 457-714 were issued as Department of the Environment, Fisheries and Marine Service, Research and Development Directorate Technical Reports. Numbers 715-924 were issued as Department of Fisheries and Environment, Fisheries and Marine Service Technical Reports. The current series name was changed with report number 925. Rapport technique canadien des sciences halieutiques et aquatiques Les rapports techniques contiennent des renseignements scientifiques et techniques qui constituent une contribution aux connaissances actuelles, mais qui ne sont pas normalement appropriés pour la publication dans un journal scientifique. -
Nucleotide Diversity of the Colorless Green Alga Polytomella Parva (Chlorophyceae, Chlorophyta): High for the Mitochondrial Telo
The Journal of Published by the International Society of Eukaryotic Microbiology Protistologists J. Eukaryot. Microbiol., 58(5), pp. 471–473 r 2011 The Author(s) Journal of Eukaryotic Microbiology r 2011 International Society of Protistologists DOI: 10.1111/j.1550-7408.2011.00569.x Nucleotide Diversity of the Colorless Green Alga Polytomella parva (Chlorophyceae, Chlorophyta): High for the Mitochondrial Telomeres, Surprisingly Low Everywhere Elseà DAVID ROY SMITH1 and ROBERT W. LEE Department of Biology, Dalhousie University, Halifax, Nova Scotia, Canada B3H 4R2 ABSTRACT. Silent-site nucleotide diversity data (psilent) can provide insights into the forces driving genome evolution. Here we present psilent statistics for the mitochondrial and nuclear DNAs of Polytomella parva, a nonphotosynthetic green alga with a highly reduced, linear fragmented mitochondrial genome. We show that this species harbors very little genetic diversity, with the exception of the mitochondrial telomeres, which have an excess of polymorphic sites. These data are compared with previously published psilent values from the mitochondrial and nuclear genomes of the model species Chlamydomonas reinhardtii and Volvox carteri, which are close relatives of P. parva, and are used to understand the modes and tempos of genome evolution within green algae. Key Words. Chlamydomonas, Chlorophyte, genetic diversity, mitochondrial DNA, Volvox. HE nucleotide diversity at silent sites (psilent), which include RESULTS AND DISCUSSION T noncoding positions and the synonymous sites of protein-cod- ing DNA, can provide insights into the combined contributions of For measuring nucleotide diversity we used the following Poly- genetic drift and mutation acting on a genome—parameters that are tomella SAG strains, with origins of isolation listed in brackets: SAG arguably among the key determinants driving the evolution of ge- 63-2 (Glasgow, Scotland), 63-2b (Bohemia, Czech Republic), 63-3 nomic architecture (Lynch 2007). -
The Dunaliella Salina Organelle Genomes: Large Sequences, Inflated with Intronic and Intergenic DNA BMC Plant Biology 2010, 10:83
Smith et al. BMC Plant Biology 2010, 10:83 http://www.biomedcentral.com/1471-2229/10/83 RESEARCH ARTICLE Open Access TheResearch Dunaliella article salina organelle genomes: large sequences, inflated with intronic and intergenic DNA David Roy Smith*1, Robert W Lee1, John C Cushman2, Jon K Magnuson3, Duc Tran4 and Jürgen EW Polle4 Abstract Background: Dunaliella salina Teodoresco, a unicellular, halophilic green alga belonging to the Chlorophyceae, is among the most industrially important microalgae. This is because D. salina can produce massive amounts of β- carotene, which can be collected for commercial purposes, and because of its potential as a feedstock for biofuels production. Although the biochemistry and physiology of D. salina have been studied in great detail, virtually nothing is known about the genomes it carries, especially those within its mitochondrion and plastid. This study presents the complete mitochondrial and plastid genome sequences of D. salina and compares them with those of the model green algae Chlamydomonas reinhardtii and Volvox carteri. Results: The D. salina organelle genomes are large, circular-mapping molecules with ~60% noncoding DNA, placing them among the most inflated organelle DNAs sampled from the Chlorophyta. In fact, the D. salina plastid genome, at 269 kb, is the largest complete plastid DNA (ptDNA) sequence currently deposited in GenBank, and both the mitochondrial and plastid genomes have unprecedentedly high intron densities for organelle DNA: ~1.5 and ~0.4 introns per gene, respectively. Moreover, what appear to be the relics of genes, introns, and intronic open reading frames are found scattered throughout the intergenic ptDNA regions -- a trait without parallel in other characterized organelle genomes and one that gives insight into the mechanisms and modes of expansion of the D.