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Relaxed Selection in the Wild
TREE-1109; No of Pages 10 Review Relaxed selection in the wild David C. Lahti1, Norman A. Johnson2, Beverly C. Ajie3, Sarah P. Otto4, Andrew P. Hendry5, Daniel T. Blumstein6, Richard G. Coss7, Kathleen Donohue8 and Susan A. Foster9 1 Department of Biology, University of Massachusetts, Amherst, MA 01003, USA 2 Department of Plant, Soil, and Insect Sciences, University of Massachusetts, Amherst, MA 01003, USA 3 Center for Population Biology, University of California, Davis, CA 95616, USA 4 Department of Zoology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada 5 Redpath Museum and Department of Biology, McGill University, Montreal, QC H3A 2K6, Canada 6 Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095, USA 7 Department of Psychology, University of California, Davis, CA 95616, USA 8 Department of Biology, Duke University, Durham, NC 02138, USA 9 Department of Biology, Clark University, Worcester, MA 01610, USA Natural populations often experience the weakening or are often less clear than typical cases of trait evolution. removal of a source of selection that had been important When an environmental change results in strong selection in the maintenance of one or more traits. Here we refer to on a trait from a known source, a prediction for trait these situations as ‘relaxed selection,’ and review recent evolution often follows directly from this fact [2]. When studies that explore the effects of such changes on traits such a strong source of selection is removed, however, no in their ecological contexts. In a few systems, such as the clear prediction emerges. Rather, the likelihood of various loss of armor in stickleback, the genetic, developmental consequences can only be understood by integrating the and ecological bases of trait evolution are being discov- remaining sources of selection and processes at all levels of ered. -
Lecture 20 - the History of Life on Earth
Lecture 20 - The History of Life on Earth Lecture 20 The History of Life on Earth Astronomy 141 – Autumn 2012 This lecture reviews the history of life on Earth. Rapid diversification of anaerobic prokaryotes during the Proterozoic Eon Emergence of Photosynthesis and the rise of O2 in the Earth’s atmosphere. Rise of Eukaryotes and the Cambrian Explosion in biodiversity at the start of the Phanerozoic Eon Colonization of land first by plants, then by animals Emergence of primates, then hominids, then humans. A brief digression on notation: “ya” = “years ago” Introduce a simple compact notation for writing the length of time before the present day. For example: “3.5 Billion years ago” “454 Million years ago” Gya = “giga-years ago”, hence 3.5 Gya = 3.5 Billion years ago Mya = “mega-years ago”, hence 454 Mya = 454 Million years ago [Note: some sources use Ga and Ma] Astronomy 141 - Winter 2012 1 Lecture 20 - The History of Life on Earth The four Eons of geological time. Hadean: 4.5 – 3.8 Gya: Formation, oceans & atmosphere Archaean: 3.8 – 2.5 Gya: Stromatolites & fossil bacteria Proterozoic: 2.5 Gya – 454 Mya: Eukarya and Oxygen Phanerozoic: since 454 Mya: Rise of plant and animal life The Archaean Eon began with the end of heavy bombardment ~3.8 Gya. Conditions stabilized. Oceans, but no O2 in the atmosphere. Stromatolites appear in the geological record ~3.5 Gya and thrived for >1 Billion years Rise of anaerobic microbes in the deep ocean & shores using Chemosynthesis. Time of rapid diversification of life driven by Natural Selection. -
Chapter 22 Notes: Introduction to Evolution
NOTES: Ch 22 – Descent With Modification – A Darwinian View of Life Our planet is home to a huge variety of organisms! (Scientists estimate of organisms alive today!) Even more amazing is evidence of organisms that once lived on earth, but are now . Several hundred million species have come and gone during 4.5 billion years life is believed to have existed on earth So…where have they gone… why have they disappeared? EVOLUTION: the process by which have descended from . Central Idea: organisms alive today have been produced by a long process of . FITNESS: refers to traits and behaviors of organisms that enable them to survive and reproduce COMMON DESCENT: species ADAPTATION: any inherited characteristic that enhances an organism’s ability to ~based on variations that are HOW DO WE KNOW THAT EVOLUTION HAS OCCURRED (and is still happening!!!)??? Lines of evidence: 1) So many species! -at least (250,000 beetles!) 2) ADAPTATIONS ● Structural adaptations - - ● Physiological adaptations -change in - to certain toxins 3) Biogeography: - - and -Examples: 13 species of finches on the 13 Galapagos Islands -57 species of Kangaroos…all in Australia 4) Age of Earth: -Rates of motion of tectonic plates - 5) FOSSILS: -Evidence of (shells, casts, bones, teeth, imprints) -Show a -We see progressive changes based on the order they were buried in sedimentary rock: *Few many fossils / species * 6) Applied Genetics: “Artificial Selection” - (cattle, dogs, cats) -insecticide-resistant insects - 7) Homologies: resulting from common ancestry Anatomical Homologies: ● comparative anatomy reveals HOMOLOGOUS STRUCTURES ( , different functions) -EX: ! Vestigial Organs: -“Leftovers” from the evolutionary past -Structures that Embryological Homologies: ● similarities evident in Molecular/Biochemical Homologies: ● DNA is the “universal” genetic code or code of life ● Proteins ( ) Darwin & the Scientists of his time Introduction to Darwin… ● On November 24, 1859, Charles Darwin published On the Origin of Species by Means of Natural Selection. -
Population Size and the Rate of Evolution
Review Population size and the rate of evolution 1,2 1 3 Robert Lanfear , Hanna Kokko , and Adam Eyre-Walker 1 Ecology Evolution and Genetics, Research School of Biology, Australian National University, Canberra, ACT, Australia 2 National Evolutionary Synthesis Center, Durham, NC, USA 3 School of Life Sciences, University of Sussex, Brighton, UK Does evolution proceed faster in larger or smaller popu- mutations occur and the chance that each mutation lations? The relationship between effective population spreads to fixation. size (Ne) and the rate of evolution has consequences for The purpose of this review is to synthesize theoretical our ability to understand and interpret genomic varia- and empirical knowledge of the relationship between tion, and is central to many aspects of evolution and effective population size (Ne, Box 1) and the substitution ecology. Many factors affect the relationship between Ne rate, which we term the Ne–rate relationship (NeRR). A and the rate of evolution, and recent theoretical and positive NeRR implies faster evolution in larger popula- empirical studies have shown some surprising and tions relative to smaller ones, and a negative NeRR implies sometimes counterintuitive results. Some mechanisms the opposite (Figure 1A,B). Although Ne has long been tend to make the relationship positive, others negative, known to be one of the most important factors determining and they can act simultaneously. The relationship also the substitution rate [5–8], several novel predictions and depends on whether one is interested in the rate of observations have emerged in recent years, causing some neutral, adaptive, or deleterious evolution. Here, we reassessment of earlier theory and highlighting some gaps synthesize theoretical and empirical approaches to un- in our understanding. -
Biological Sciences 1
Biological Sciences 1 Biological Sciences Marine Biology The Marine Biology major provides students with a strong foundation in basic biological concepts such as genetics, ecology, cell biology and marine systems as well as chemistry and mathematics. The plan of study provides the opportunity to choose elective courses from a wide variety of courses offered at Auburn University. In addition, students are required to take summer courses offered at marine labs around the United States, including Dauphin Island Sea Lab and Gulf Coast Research Lab. Students are also encouraged to consider internships and undergraduate research. Marine Biology graduates are well-prepared for advanced study in any marine science area or employment with marine labs, various governmental and nongovernmental agencies involved with coastal management and conservation, and tourism. Microbial, Cellular and Molecular Biology The Microbial, Cellular and Molecular Biology major provides students with an excellent foundation in the areas of microbiology, cellular and molecular biology that emphasizes the understanding of life at the cellular and molecular level. The choice of a formal option within the major allows students to concentrate on a particular area of interest. Each option provides a wide variety of courses and opportunities for undergraduate research. Students selecting the Microbiology option will be well prepared for postgraduate work or career advancement in a number of areas including food, environmental and medical microbiology. Students selecting the Cell and Molecular Biology option would also be well prepared for postgraduate study or career advancement in any area of eukaryotic cell or molecular biology. Both options provide excellent preparation for students interested in biotechnology or professional programs in the health sciences. -
Transformations of Lamarckism Vienna Series in Theoretical Biology Gerd B
Transformations of Lamarckism Vienna Series in Theoretical Biology Gerd B. M ü ller, G ü nter P. Wagner, and Werner Callebaut, editors The Evolution of Cognition , edited by Cecilia Heyes and Ludwig Huber, 2000 Origination of Organismal Form: Beyond the Gene in Development and Evolutionary Biology , edited by Gerd B. M ü ller and Stuart A. Newman, 2003 Environment, Development, and Evolution: Toward a Synthesis , edited by Brian K. Hall, Roy D. Pearson, and Gerd B. M ü ller, 2004 Evolution of Communication Systems: A Comparative Approach , edited by D. Kimbrough Oller and Ulrike Griebel, 2004 Modularity: Understanding the Development and Evolution of Natural Complex Systems , edited by Werner Callebaut and Diego Rasskin-Gutman, 2005 Compositional Evolution: The Impact of Sex, Symbiosis, and Modularity on the Gradualist Framework of Evolution , by Richard A. Watson, 2006 Biological Emergences: Evolution by Natural Experiment , by Robert G. B. Reid, 2007 Modeling Biology: Structure, Behaviors, Evolution , edited by Manfred D. Laubichler and Gerd B. M ü ller, 2007 Evolution of Communicative Flexibility: Complexity, Creativity, and Adaptability in Human and Animal Communication , edited by Kimbrough D. Oller and Ulrike Griebel, 2008 Functions in Biological and Artifi cial Worlds: Comparative Philosophical Perspectives , edited by Ulrich Krohs and Peter Kroes, 2009 Cognitive Biology: Evolutionary and Developmental Perspectives on Mind, Brain, and Behavior , edited by Luca Tommasi, Mary A. Peterson, and Lynn Nadel, 2009 Innovation in Cultural Systems: Contributions from Evolutionary Anthropology , edited by Michael J. O ’ Brien and Stephen J. Shennan, 2010 The Major Transitions in Evolution Revisited , edited by Brett Calcott and Kim Sterelny, 2011 Transformations of Lamarckism: From Subtle Fluids to Molecular Biology , edited by Snait B. -
Timeline of the Evolutionary History of Life
Timeline of the evolutionary history of life This timeline of the evolutionary history of life represents the current scientific theory Life timeline Ice Ages outlining the major events during the 0 — Primates Quater nary Flowers ←Earliest apes development of life on planet Earth. In P Birds h Mammals – Plants Dinosaurs biology, evolution is any change across Karo o a n ← Andean Tetrapoda successive generations in the heritable -50 0 — e Arthropods Molluscs r ←Cambrian explosion characteristics of biological populations. o ← Cryoge nian Ediacara biota – z ← Evolutionary processes give rise to diversity o Earliest animals ←Earliest plants at every level of biological organization, i Multicellular -1000 — c from kingdoms to species, and individual life ←Sexual reproduction organisms and molecules, such as DNA and – P proteins. The similarities between all present r -1500 — o day organisms indicate the presence of a t – e common ancestor from which all known r Eukaryotes o species, living and extinct, have diverged -2000 — z o through the process of evolution. More than i Huron ian – c 99 percent of all species, amounting to over ←Oxygen crisis [1] five billion species, that ever lived on -2500 — ←Atmospheric oxygen Earth are estimated to be extinct.[2][3] Estimates on the number of Earth's current – Photosynthesis Pong ola species range from 10 million to 14 -3000 — A million,[4] of which about 1.2 million have r c been documented and over 86 percent have – h [5] e not yet been described. However, a May a -3500 — n ←Earliest oxygen 2016 -
Evolutionary Trends
Evo Edu Outreach (2008) 1:259–273 DOI 10.1007/s12052-008-0055-6 ORIGINAL SCIENTIFIC ARTICLE Evolutionary Trends T. Ryan Gregory Published online: 25 June 2008 # Springer Science + Business Media, LLC 2008 Abstract The occurrence, generality, and causes of large- a pattern alone, to extrapolate from individual cases to scale evolutionary trends—directional changes over long entire systems, and to focus on extremes rather than periods of time—have been the subject of intensive study recognizing diversity. This is especially true in the study and debate in evolutionary science. Large-scale patterns in the of historically contingent processes such as evolution, history of life have also been of considerable interest to which spans nearly four billion years and encompasses nonspecialists, although misinterpretations and misunder- the rise and disappearance of hundreds of millions, if not standings of this important issue are common and can have billions, of species and the struggles of an unimaginably significant implications for an overall understanding of large number of individual organisms. evolution. This paper provides an overview of how trends This is not to say that no patterns exist in the history of are identified, categorized, and explained in evolutionary life, only that the situation is often far more complex than is biology. Rather than reviewing any particular trend in detail, acknowledged. Notably, the most common portrayals of the intent is to provide a framework for understanding large- evolution in nonacademic settings include not just change, scale evolutionary patterns in general and to highlight the fact but directional, adaptive change—if not outright notions of that both the patterns and their underlying causes are usually “advancement”—and it is fair to say that such a view has in quite complex. -
Sirenian Feeding Apparatus: Functional Morphology of Feeding Involving Perioral Bristles and Associated Structures
THE SIRENIAN FEEDING APPARATUS: FUNCTIONAL MORPHOLOGY OF FEEDING INVOLVING PERIORAL BRISTLES AND ASSOCIATED STRUCTURES By CHRISTOPHER DOUGLAS MARSHALL A DISSERTATION PRESENTED TO THE GRADUATE SCHOOL OF THE UNrVERSITY OF FLORIDA IN PARTIAL FULFILLMENT OF THE REOUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY UNIVERSITY OF FLORIDA 1997 DEDICATION to us simply as I dedicate this work to the memory of J. Rooker (known "Rooker") and to sirenian conservation. Rooker was a subject involved in the study during the 1993 sampling year at Lowry Park Zoological Gardens. Rooker died during the red tide event in May of 1996; approximately 140 other manatees also died. During his rehabilitation at Lowry Park Zoo, Rooker provided much information regarding the mechanism of manatee feeding and use of the perioral bristles. The "mortality incident" involving the red tide event in southwest Florida during the summer of 1996 should serve as a reminder that the Florida manatee population and the status of all sirenians is precarious. Although some estimates suggest that the Florida manatee population may be stable, annual mortality numbers as well as habitat degradation continue to increase. Sirenian conservation and research efforts must continue. ii ACKNOWLEDGMENTS Research involving Florida manatees required that I work with several different government agencies and private parks. The staff of the Sirenia Project, U.S. Geological Service, Biological Resources Division - Florida Caribbean Science Center has been most helpful in conducting the behavioral aspect of this research and allowed this work to occur under their permit (U.S. Fish and Wildlife Permit number PRT-791721). Numerous conversations regarding manatee biology with Dr. -
Lineages, Splits and Divergence Challenge Whether the Terms Anagenesis and Cladogenesis Are Necessary
Biological Journal of the Linnean Society, 2015, , – . With 2 figures. Lineages, splits and divergence challenge whether the terms anagenesis and cladogenesis are necessary FELIX VAUX*, STEVEN A. TREWICK and MARY MORGAN-RICHARDS Ecology Group, Institute of Agriculture and Environment, Massey University, Palmerston North, New Zealand Received 3 June 2015; revised 22 July 2015; accepted for publication 22 July 2015 Using the framework of evolutionary lineages to separate the process of evolution and classification of species, we observe that ‘anagenesis’ and ‘cladogenesis’ are unnecessary terms. The terms have changed significantly in meaning over time, and current usage is inconsistent and vague across many different disciplines. The most popular definition of cladogenesis is the splitting of evolutionary lineages (cessation of gene flow), whereas anagenesis is evolutionary change between splits. Cladogenesis (and lineage-splitting) is also regularly made synonymous with speciation. This definition is misleading as lineage-splitting is prolific during evolution and because palaeontological studies provide no direct estimate of gene flow. The terms also fail to incorporate speciation without being arbitrary or relative, and the focus upon lineage-splitting ignores the importance of divergence, hybridization, extinction and informative value (i.e. what is helpful to describe as a taxon) for species classification. We conclude and demonstrate that evolution and species diversity can be considered with greater clarity using simpler, more transparent terms than anagenesis and cladogenesis. Describing evolution and taxonomic classification can be straightforward, and there is no need to ‘make words mean so many different things’. © 2015 The Linnean Society of London, Biological Journal of the Linnean Society, 2015, 00, 000–000. -
The Cambrian and Beyond A. Types of Fossils 1. Compression
The Cambrian and Beyond A. Types of Fossils 1. Compression & Impression fossils 2. Permineralized fossils 3. Casts & Molds 4. Unaltered remains – mummy B. Sorting out the Fossil Record: Strengths & Weaknesses 1. Lowland and shallow marine bias 2. Hard part bias 3. Age bias 4. Goal is to recognize the constraints and still be creative C. Cambrian Explosion Revisited – The Metazoan Body Plan 1. All animal phyla appeared in ~40 million years! 2. Symmetry – Diploblasts and Triplotblasts (Radial and Bilateral) a. Ecto/Endo vs Ecto/Endo/Mesoderm 3. Coelom or fluid filled cavity via mesoderm lined peritoneum a. Coelomates, pseudocoelomates, acoelomates 4. Protostomes (Ecdysozoans & Lophotrochozoans) and deuterostomes a. both have bilateral symmetry, true coeloms, 3 tissue types b. spiral cleavage vs. radial cleavage c. gastrulation – first the mouth or second the mouth 5. Notochords.... D. Ediacaran & Burgess Shale Faunas 1. Ediacaran – Soft bodies forms, many trace type fossils 2. Burgess Shale – Wide variety of body plans evolved, only a subset remained, fewer yet exist today. Lecture 12.1 E. Phylogeny of Metazoans: New Ways to Make a Living 1. Environmental forcing functions, e.g., Oxygen Story 2. Genetic forcing functions, e.g., HOM/Hox genes F. Macroevolutionary Patterns: Evolution’s Greatest Hits! 1. Adaptive radiations correlated with adaptive innovations giving rise to a number of descendant species that occupy a large range of niches. a. Lacking competitors over superior adaptations 2. Major Examples: ! Cambrian Explosion for animals ! Twice with land plants, Silurian/Devonian and Cretaceous G. Punctuated Equilibrium 1. Darwin: aware of the problem, but wrote off as patchy record due to incompleteness of the fossil record. -
IN EVOLUTION JACK LESTER KING UNIVERSITY of CALIFORNIA, SANTA BARBARA This Paper Is Dedicated to Retiring University of California Professors Curt Stern and Everett R
THE ROLE OF MUTATION IN EVOLUTION JACK LESTER KING UNIVERSITY OF CALIFORNIA, SANTA BARBARA This paper is dedicated to retiring University of California Professors Curt Stern and Everett R. Dempster. 1. Introduction Eleven decades of thought and work by Darwinian and neo-Darwinian scientists have produced a sophisticated and detailed structure of evolutionary ,theory and observations. In recent years, new techniques in molecular biology have led to new observations that appear to challenge some of the basic theorems of classical evolutionary theory, precipitating the current crisis in evolutionary thought. Building on morphological and paleontological observations, genetic experimentation, logical arguments, and upon mathematical models requiring simplifying assumptions, neo-Darwinian theorists have been able to make some remarkable predictions, some of which, unfortunately, have proven to be inaccurate. Well-known examples are the prediction that most genes in natural populations must be monomorphic [34], and the calculation that a species could evolve at a maximum rate of the order of one allele substitution per 300 genera- tions [13]. It is now known that a large proportion of gene loci are polymorphic in most species [28], and that evolutionary genetic substitutions occur in the human line, for instance, at a rate of about 50 nucleotide changes per generation [20], [24], [25], [26]. The puzzling observation [21], [40], [46], that homologous proteins in different species evolve at nearly constant rates is very difficult to account for with classical evolutionary theory, and at the very least gives a solid indication that there are qualitative differences between the ways molecules evolve and the ways morphological structures evolve.