By Thesis for the Degree of Doctor of Philosophy
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Puccinia</I> Species on <I>Poaceae</I
ISSN (print) 0093-4666 © 2012. Mycotaxon, Ltd. ISSN (online) 2154-8889 MYCOTAXON http://dx.doi.org/10.5248/120.407 Volume 120, pp. 407–413 April–June 2012 New records of Puccinia species on Poaceae from Fairy Meadows, Pakistan N.S. Afshan1*, A.N. Khalid2 & A.R. Niazi2 1*Centre for Undergraduate Studies & 2Department of Botany, University of the Punjab, Quaid-e-Azam Campus, Lahore, 54590, Pakistan *Correspondence to: [email protected] Abstract — During a survey of rust fungi of Fairy Meadows, Puccinia brachypodii var. major on Poa attenuata and P. substriata var. indica on Pennisetum orientale were reported for the first time. These new rust fungi records bring to 70 the number of Puccinia species reported on Poaceae from Pakistan. Puccinia brachypodii var. poae-nemoralis and P. poarum are also reported for the first time from Fairy Meadows. Key words — Anthoxanthum odoratum, graminicolous rust, Hunza Introduction This paper continues our study of graminicolous rust fungi from Pakistan. Previously, about 100 species of graminicolous rust fungi including 68 taxa of Puccinia have been reported from Pakistan (Afshan et al. 2010, 2011a,b). During a 2007 survey of the rust flora of Fairy Meadows, four members of Poaceae infected with rust fungi were collected. Among these, Puccinia brachypodii var. major on Poa attenuata and P. substriata var. indica on Pennisetum orientale represent new records for Pakistan, while P. brachypodii var. poae-nemoralis on Anthoxanthum odoratum and P. poarum on Poa pratensis are additions to the rust flora of Fairy Meadows. Anthoxanthum odoratum represents a new host for rust fungi from Pakistan. -
Sexual Selection in Fungi
Sexual selection in Fungi Bart P. S. Nieuwenhuis Thesis committee Thesis supervisor Prof. dr. R.F. Hoekstra Emeritus professor of Genetics (Population and Quantitative Genetics) Wageningen University Thesis co-supervisor Dr. D.K. Aanen Assistant professor at the Laboratory of Genetics Wageningen University Other members Prof. dr. J. B. Anderson, University of Toronto, Toronto, Canada Prof. dr. W. de Boer, NIOO, Wageningen and Wageningen University Prof. dr. P.G.L. Klinkhamer, Leiden University, Leiden Prof. dr. H.A.B. Wösten, Utrecht Univesity, Utrecht This research was conducted under the auspices of the C.T. de Wit Graduate School for Production Ecology and Resource Conservation (PE&RC) Sexual selection in Fungi Bart P. S. Nieuwenhuis Thesis submittted in fulfilment of the requirements for the degree of doctor at Wageningen University by the authority of the Rector Magnificus Prof. dr. M.J. Kropff, in the presence of the Thesis Committee appointed by the Academic Board to be defended in public on Friday 21 September 2012 at 4 p.m. in the Aula. Bart P. S. Nieuwenhuis Sexual selection in Fungi Thesis, Wageningen University, Wageningen, NL (2012) With references, with summaries in Dutch and English ISBN 978-94-6173-358-0 Contents Chapter 1 7 General introduction Chapter 2 17 Why mating types are not sexes Chapter 3 31 On the asymmetry of mating in the mushroom fungus Schizophyllum commune Chapter 4 49 Sexual selection in mushroom-forming basidiomycetes Chapter 5 59 Fungal fidelity: Nuclear divorce from a dikaryon by mating or monokaryon regeneration Chapter 6 69 Fungal nuclear arms race: experimental evolution for increased masculinity in a mushroom Chapter 7 89 Sexual selection in the fungal kingdom Chapter 8 109 Discussion: male and female fitness Bibliography 121 Summary 133 Dutch summary 137 Dankwoord 147 Curriculum vitea 153 Education statement 155 6 Chapter 1 General introduction Bart P. -
Why Mushrooms Have Evolved to Be So Promiscuous: Insights from Evolutionary and Ecological Patterns
fungal biology reviews 29 (2015) 167e178 journal homepage: www.elsevier.com/locate/fbr Review Why mushrooms have evolved to be so promiscuous: Insights from evolutionary and ecological patterns Timothy Y. JAMES* Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109, USA article info abstract Article history: Agaricomycetes, the mushrooms, are considered to have a promiscuous mating system, Received 27 May 2015 because most populations have a large number of mating types. This diversity of mating Received in revised form types ensures a high outcrossing efficiency, the probability of encountering a compatible 17 October 2015 mate when mating at random, because nearly every homokaryotic genotype is compatible Accepted 23 October 2015 with every other. Here I summarize the data from mating type surveys and genetic analysis of mating type loci and ask what evolutionary and ecological factors have promoted pro- Keywords: miscuity. Outcrossing efficiency is equally high in both bipolar and tetrapolar species Genomic conflict with a median value of 0.967 in Agaricomycetes. The sessile nature of the homokaryotic Homeodomain mycelium coupled with frequent long distance dispersal could account for selection favor- Outbreeding potential ing a high outcrossing efficiency as opportunities for choosing mates may be minimal. Pheromone receptor Consistent with a role of mating type in mediating cytoplasmic-nuclear genomic conflict, Agaricomycetes have evolved away from a haploid yeast phase towards hyphal fusions that display reciprocal nuclear migration after mating rather than cytoplasmic fusion. Importantly, the evolution of this mating behavior is precisely timed with the onset of diversification of mating type alleles at the pheromone/receptor mating type loci that are known to control reciprocal nuclear migration during mating. -
WRITTEN FINDINGS of the WASHINGTON STATE NOXIOUS WEED CONTROL BOARD 2018 Noxious Weed List Proposal
DRAFT: WRITTEN FINDINGS OF THE WASHINGTON STATE NOXIOUS WEED CONTROL BOARD 2018 Noxious Weed List Proposal Scientific Name: Tussilago farfara L. Synonyms: Cineraria farfara Bernh., Farfara radiata Gilib., Tussilago alpestris Hegetschw., Tussilago umbertina Borbás Common Name: European coltsfoot, coltsfoot, bullsfoot, coughwort, butterbur, horsehoof, foalswort, fieldhove, English tobacco, hallfoot Family: Asteraceae Legal Status: Proposed as a Class B noxious weed for 2018, to be designated for control throughout Washington, except for in Grant, Lincoln, Adams, Benton, and Franklin counties. Images: left, blooming flowerheads of Tussilago farfara, image by Caleb Slemmons, National Ecological Observatory Network, Bugwood.org; center, leaves of T. farfara growing with ferns, grasses and other groundcover species; right, mature seedheads of T. farfara before seeds have been dispersed, center and right images by Leslie J. Mehrhoff, University of Connecticut, Bugwood.org. Description and Variation: The common name of Tussilago farfara, coltsfoot, refers to the outline of the basal leaf being that of a colt’s footprint. Overall habit: Tussilago farfara is a rhizomatous perennial, growing up to 19.7 inches (50 cm tall), which can form extensive colonies. Plants first send up flowering stems in the spring, each with a single yellow flowerhead. Just before or after flowers have formed seeds, basal leaves on long petioles grow from the rhizomes, with somewhat roundish leaf blades that are more or less white-woolly on the undersides. Roots: Plants have long creeping, white scaly rhizomes (Griffiths 1994, Chen and Nordenstam 2011). Rhizomes are branching and have fibrous roots (Barkley 2006). They are also brittle and can break easily (Pfeiffer et al. -
Phylogenetic Classification of Life
Proc. Natl. Accad. Sci. USA Vol. 93, pp. 1071-1076, February 1996 Evolution Archaeal- eubacterial mergers in the origin of Eukarya: Phylogenetic classification of life (centriole-kinetosome DNA/Protoctista/kingdom classification/symbiogenesis/archaeprotist) LYNN MARGULIS Department of Biology, University of Massachusetts, Amherst, MA 01003-5810 Conitribluted by Lynnl Marglulis, September 15, 1995 ABSTRACT A symbiosis-based phylogeny leads to a con- these features evolved in their ancestors by inferable steps (4, sistent, useful classification system for all life. "Kingdoms" 20). rRNA gene sequences (Trichomonas, Coronympha, Giar- and "Domains" are replaced by biological names for the most dia; ref. 11) confirm these as descendants of anaerobic eu- inclusive taxa: Prokarya (bacteria) and Eukarya (symbiosis- karyotes that evolved prior to the "crown group" (12)-e.g., derived nucleated organisms). The earliest Eukarya, anaero- animals, fungi, or plants. bic mastigotes, hypothetically originated from permanent If eukaryotes began as motility symbioses between Ar- whole-cell fusion between members of Archaea (e.g., Thermo- chaea-e.g., Thermoplasma acidophilum-like and Eubacteria plasma-like organisms) and of Eubacteria (e.g., Spirochaeta- (Spirochaeta-, Spirosymplokos-, or Diplocalyx-like microbes; like organisms). Molecular biology, life-history, and fossil ref. 4) where cell-genetic integration led to the nucleus- record evidence support the reunification of bacteria as cytoskeletal system that defines eukaryotes (21)-then an Prokarya while -
Molecular Identification of Fungi
Molecular Identification of Fungi Youssuf Gherbawy l Kerstin Voigt Editors Molecular Identification of Fungi Editors Prof. Dr. Youssuf Gherbawy Dr. Kerstin Voigt South Valley University University of Jena Faculty of Science School of Biology and Pharmacy Department of Botany Institute of Microbiology 83523 Qena, Egypt Neugasse 25 [email protected] 07743 Jena, Germany [email protected] ISBN 978-3-642-05041-1 e-ISBN 978-3-642-05042-8 DOI 10.1007/978-3-642-05042-8 Springer Heidelberg Dordrecht London New York Library of Congress Control Number: 2009938949 # Springer-Verlag Berlin Heidelberg 2010 This work is subject to copyright. All rights are reserved, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilm or in any other way, and storage in data banks. Duplication of this publication or parts thereof is permitted only under the provisions of the German Copyright Law of September 9, 1965, in its current version, and permission for use must always be obtained from Springer. Violations are liable to prosecution under the German Copyright Law. The use of general descriptive names, registered names, trademarks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. Cover design: WMXDesign GmbH, Heidelberg, Germany, kindly supported by ‘leopardy.com’ Printed on acid-free paper Springer is part of Springer Science+Business Media (www.springer.com) Dedicated to Prof. Lajos Ferenczy (1930–2004) microbiologist, mycologist and member of the Hungarian Academy of Sciences, one of the most outstanding Hungarian biologists of the twentieth century Preface Fungi comprise a vast variety of microorganisms and are numerically among the most abundant eukaryotes on Earth’s biosphere. -
Identified Difficulties and Conditions for Field Success of Biocontrol
Identified difficulties and conditions for field success of biocontrol. 4. Socio-economic aspects: market analysis and outlook Bernard Blum, Philippe C. Nicot, Jürgen Köhl, Michelina Ruocco To cite this version: Bernard Blum, Philippe C. Nicot, Jürgen Köhl, Michelina Ruocco. Identified difficulties and conditions for field success of biocontrol. 4. Socio-economic aspects: market analysis and outlook. Classical and augmentative biological control against diseases and pests: critical status analysis and review of factors influencing their success, IOBC - International Organisation for Biological and Integrated Controlof Noxious Animals and Plants, 2011, 978-92-9067-243-2. hal-02809583 HAL Id: hal-02809583 https://hal.inrae.fr/hal-02809583 Submitted on 6 Jun 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. WPRS International Organisation for Biological and Integrated Control of Noxious IOBC Animals and Plants: West Palaearctic Regional Section SROP Organisation Internationale de Lutte Biologique et Integrée contre les Animaux et les OILB Plantes Nuisibles: -
Bot 316 Mycology and Fungal Physiology
BOT 316 MYCOLOGY AND FUNGAL PHYSIOLOGY Dr Osondu Akoma 2011 BOT 316 MYCOLOGY AND FUNGAL PHYSIOLOGY INTRODUCTION HISTORICAL BACKGROUND Mycology is a classical translation of the Greek word Mykes logos which means mushroom discussion, thus mycology is the study of fungi. In the past this area of science was limited to the study of mushrooms but as science developed, the scope of the subject widened far beyond the objects seen with the naked eyes with the discovery of microscopes. The development of mycology cannot be isolated from that of science. The ancestry of fungi is ancient, dating back to the Devonian and Precambrian eras. The history is also influenced by calamities and man has always kept record from time and as such the first record of fungi was not that of observing fungi directly but that of their harmful effects. The Romans and Greeks have a lot in their records. Even in the Holy Bible there are many references of the fungi and their effects; Leviticus 14: 4-48, 1Kings 8:37, Deuteronomy 28:22. The first indication that man saw fungi as food was a report of death at Icarius. The first book devoted to fungi is the Van Sterbeek’s “Theatrum Fungerium” in 1675 and this work distinguished the edible from the poisonous mushrooms. The discovery of the microscope led to the systematic study of the fungi. Robert Hooke was credited with the first illustration of micro fungi in 1667 in his work titled Micrographa . The Greeks and Romans regarded fungi as mysterious things. They were regarded as the “evil formats of the earth originating from the mouth of vipers”. -
Cilia and Flagella of Eukaryotes
Cilia and Flagella of Eukaryotes I . R . GIBBONS The simple description that cilia are "contractile protoplasm in Early Developments its simplest form" (Dellinger, 1909) has fallen away as a mean- Among the most notable steps in the history of early studies ingless phrase ... A cilium is manifestly a highly complex and Downloaded from http://rupress.org/jcb/article-pdf/91/3/107s/1075481/107s.pdf by guest on 26 September 2021 compound organ, and . morphological description is clearly on cilia and flagella were the initial light microscope observa- only a beginning . tions of beating cilia on ciliated protozoa by Anton van Leeu- Irene Manton, 1952 wenhoek in 1675 ; the hypothesis proposed by W . Sharpey in 1835 that cilia and flagella are active organelles moved by contractile material distributed along their length rather than As recognized by Irene Manton (1) at the time that the basic passive structures moved by cytoplasmic flow or other contrac- 9 + 2 structural uniformity of cilia and most eukaryotic flagella tile activity within the cell body; and the observation in 1888- was first becoming recognized, these organelles are sufficiently 1890 by E . Ballowitz (2) that sperm flagella contain a substruc- complex that knowledge of their structure, no matter how ture of about 9-11 fine fibrils which are continuous along the detailed, cannot provide an understanding of their mechanisms length of the flagellum (Fig . 1) . More detailed accounts with of growth and function . In our understanding of these mecha- full references to this early work and to other studies before nisms, the substantial advances of the intervening 28 years 1948 can be found in the monographs of Sir James Gray (3) have, for the most part, resulted from experiments in which it and Michael Sleigh (4) . -
The Sally Walker Conservation Fund at Zoo Outreach Organization to Continue Key Areas of Her Interest
Building evidence for conservaton globally Journal of Threatened Taxa ISSN 0974-7907 (Online) ISSN 0974-7893 (Print) 26 November 2019 (Online & Print) PLATINUM Vol. 11 | No. 14 | 14787–14926 OPEN ACCESS 10.11609/jot.2019.11.14.14787-14926 J TT www.threatenedtaxa.org ISSN 0974-7907 (Online); ISSN 0974-7893 (Print) Publisher Host Wildlife Informaton Liaison Development Society Zoo Outreach Organizaton www.wild.zooreach.org www.zooreach.org No. 12, Thiruvannamalai Nagar, Saravanampat - Kalapat Road, Saravanampat, Coimbatore, Tamil Nadu 641035, India Ph: +91 9385339863 | www.threatenedtaxa.org Email: [email protected] EDITORS English Editors Mrs. Mira Bhojwani, Pune, India Founder & Chief Editor Dr. Fred Pluthero, Toronto, Canada Dr. Sanjay Molur Mr. P. Ilangovan, Chennai, India Wildlife Informaton Liaison Development (WILD) Society & Zoo Outreach Organizaton (ZOO), 12 Thiruvannamalai Nagar, Saravanampat, Coimbatore, Tamil Nadu 641035, Web Design India Mrs. Latha G. Ravikumar, ZOO/WILD, Coimbatore, India Deputy Chief Editor Typesetng Dr. Neelesh Dahanukar Indian Insttute of Science Educaton and Research (IISER), Pune, Maharashtra, India Mr. Arul Jagadish, ZOO, Coimbatore, India Mrs. Radhika, ZOO, Coimbatore, India Managing Editor Mrs. Geetha, ZOO, Coimbatore India Mr. B. Ravichandran, WILD/ZOO, Coimbatore, India Mr. Ravindran, ZOO, Coimbatore India Associate Editors Fundraising/Communicatons Dr. B.A. Daniel, ZOO/WILD, Coimbatore, Tamil Nadu 641035, India Mrs. Payal B. Molur, Coimbatore, India Dr. Mandar Paingankar, Department of Zoology, Government Science College Gadchiroli, Chamorshi Road, Gadchiroli, Maharashtra 442605, India Dr. Ulrike Streicher, Wildlife Veterinarian, Eugene, Oregon, USA Editors/Reviewers Ms. Priyanka Iyer, ZOO/WILD, Coimbatore, Tamil Nadu 641035, India Subject Editors 2016-2018 Fungi Editorial Board Ms. Sally Walker Dr. -
Study of Fungi- SBT 302 Mycology
MYCOLOGY DEPARTMENT OF PLANT SCIENCES DR. STANLEY KIMARU 2019 NOMENCLATURE-BINOMIAL SYSTEM OF NOMENCLATURE, RULES OF NOMENCLATURE, CLASSIFICATION OF FUNGI. KEY TO DIVISIONS AND SUB-DIVISIONS Taxonomy and Nomenclature Nomenclature is the naming of organisms. Both classification and nomenclature are governed by International code of Botanical Nomenclature, in order to devise stable methods of naming various taxa, As per binomial nomenclature, genus and species represent the name of an organism. Binomials when written should be underlined or italicized when printed. First letter of the genus should be capital and is commonly a noun, while species is often an adjective. An example for binomial can be cited as: Kingdom = Fungi Division = Eumycota Subdivision = Basidiomycotina Class = Teliomycetes Order = Uredinales Family = Pucciniaceae Genus = Puccinia Species = graminis Classification of Fungi An outline of classification (G.C. Ainsworth, F.K. Sparrow and A.S. Sussman, The Fungi Vol. IV-B, 1973) Key to divisions of Mycota Plasmodium or pseudoplasmodium present. MYXOMYCOTA Plasmodium or pseudoplasmodium absent, Assimilative phase filamentous. EUMYCOTA MYXOMYCOTA Class: Plasmodiophoromycetes 1. Plasmodiophorales Plasmodiophoraceae Plasmodiophora, Spongospora, Polymyxa Key to sub divisions of Eumycota Motile cells (zoospores) present, … MASTIGOMYCOTINA Sexual spores typically oospores Motile cells absent Perfect (sexual) state present as Zygospores… ZYGOMYCOTINA Ascospores… ASCOMYCOTINA Basidiospores… BASIDIOMYCOTINA Perfect (sexual) state -
Master Thesis
Swedish University of Agricultural Sciences Faculty of Natural Resources and Agricultural Sciences Department of Forest Mycology and Plant Pathology Uppsala 2011 Taxonomic and phylogenetic study of rust fungi forming aecia on Berberis spp. in Sweden Iuliia Kyiashchenko Master‟ thesis, 30 hec Ecology Master‟s programme SLU, Swedish University of Agricultural Sciences Faculty of Natural Resources and Agricultural Sciences Department of Forest Mycology and Plant Pathology Iuliia Kyiashchenko Taxonomic and phylogenetic study of rust fungi forming aecia on Berberis spp. in Sweden Uppsala 2011 Supervisors: Prof. Jonathan Yuen, Dept. of Forest Mycology and Plant Pathology Anna Berlin, Dept. of Forest Mycology and Plant Pathology Examiner: Anders Dahlberg, Dept. of Forest Mycology and Plant Pathology Credits: 30 hp Level: E Subject: Biology Course title: Independent project in Biology Course code: EX0565 Online publication: http://stud.epsilon.slu.se Key words: rust fungi, aecia, aeciospores, morphology, barberry, DNA sequence analysis, phylogenetic analysis Front-page picture: Barberry bush infected by Puccinia spp., outside Trosa, Sweden. Photo: Anna Berlin 2 3 Content 1 Introduction…………………………………………………………………………. 6 1.1 Life cycle…………………………………………………………………………….. 7 1.2 Hyphae and haustoria………………………………………………………………... 9 1.3 Rust taxonomy……………………………………………………………………….. 10 1.3.1 Formae specialis………………………………………………………………. 10 1.4 Economic importance………………………………………………………………... 10 2 Materials and methods……………………………………………………………... 13 2.1 Rust and barberry