Pdf); RNA Polymerase II Largest Subunit (Rpb1) Using Primer Pair RPB1-Af/RPB1-Cr (Still- Er and Hall 1997; Matheny Et Al
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Why Mushrooms Have Evolved to Be So Promiscuous: Insights from Evolutionary and Ecological Patterns
fungal biology reviews 29 (2015) 167e178 journal homepage: www.elsevier.com/locate/fbr Review Why mushrooms have evolved to be so promiscuous: Insights from evolutionary and ecological patterns Timothy Y. JAMES* Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109, USA article info abstract Article history: Agaricomycetes, the mushrooms, are considered to have a promiscuous mating system, Received 27 May 2015 because most populations have a large number of mating types. This diversity of mating Received in revised form types ensures a high outcrossing efficiency, the probability of encountering a compatible 17 October 2015 mate when mating at random, because nearly every homokaryotic genotype is compatible Accepted 23 October 2015 with every other. Here I summarize the data from mating type surveys and genetic analysis of mating type loci and ask what evolutionary and ecological factors have promoted pro- Keywords: miscuity. Outcrossing efficiency is equally high in both bipolar and tetrapolar species Genomic conflict with a median value of 0.967 in Agaricomycetes. The sessile nature of the homokaryotic Homeodomain mycelium coupled with frequent long distance dispersal could account for selection favor- Outbreeding potential ing a high outcrossing efficiency as opportunities for choosing mates may be minimal. Pheromone receptor Consistent with a role of mating type in mediating cytoplasmic-nuclear genomic conflict, Agaricomycetes have evolved away from a haploid yeast phase towards hyphal fusions that display reciprocal nuclear migration after mating rather than cytoplasmic fusion. Importantly, the evolution of this mating behavior is precisely timed with the onset of diversification of mating type alleles at the pheromone/receptor mating type loci that are known to control reciprocal nuclear migration during mating. -
(63) Continuation Inspart of Application No. PCT RE"SE SEN"I", "ES"E"NE
US 2010.0086647A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2010/0086647 A1 Kristiansen (43) Pub. Date: Apr. 8, 2010 (54) FEED OR FOOD PRODUCTS COMPRISING filed on Jan. 25, 2006, provisional application No. FUNGALMATERAL 60/690,496, filed on Jun. 15, 2005. (75) Inventor: Bjorn Kristiansen, Frederikstad (30) Foreign Application Priority Data (NO) May 13, 2005 (DK) ........................... PA 2005 00710 Correspondence Address: Jun. 15, 2005 (DK). ... PA 2005 OO88O BROWDY AND NEIMARK, P.L.L.C. Jul. 15, 2005 (DK) ....................... PCTFDKO5/OO498 624 NINTH STREET, NW Jan. 25, 2006 (DK)........................... PA 2006 OO117 SUTE 300 WASHINGTON, DC 20001-5303 (US) Publication Classification 51) Int. Cl. (73)73) AssigneeA : MEDMUSHAS(DK) s HORSHOLM ( A2.3L I/28 (2006.01) A23K L/18 (2006.01) (21) Appl. No.: 11/914,318 A23K L/6 (2006.01) CI2P 19/04 (2006.01) (22) PCT Filed: May 11, 2006 AOIK 6L/00 (2006.01) (86). PCT NO. PCT/DKO6/OO2S3 (52) U.S. Cl. ................................ 426/62: 426/2: 119/230 S371 (c)(1) (57) ABSTRACT (2), (4) Date: Dec. 1, 2009 The present invention relates to feed and food compositions comprising material obtained by fermenting fungi of the Related U.S. Application Data Basidiomycetes family in a liquid medium. Interestingly, (63) DK2005/000498,continuation inspart filed onof Jul.application 15, 2005. No. PCT enhanceRE"SE Survival SEN"I",and/or support "ES"E"NE growth of normal, healthy (60) Provisional application No. 60/690,496, filed on Jun. animals. Furthermore, the compounds may modulate the 15, 2005, provisional application No. -
Phylogenetic Classification of Trametes
TAXON 60 (6) • December 2011: 1567–1583 Justo & Hibbett • Phylogenetic classification of Trametes SYSTEMATICS AND PHYLOGENY Phylogenetic classification of Trametes (Basidiomycota, Polyporales) based on a five-marker dataset Alfredo Justo & David S. Hibbett Clark University, Biology Department, 950 Main St., Worcester, Massachusetts 01610, U.S.A. Author for correspondence: Alfredo Justo, [email protected] Abstract: The phylogeny of Trametes and related genera was studied using molecular data from ribosomal markers (nLSU, ITS) and protein-coding genes (RPB1, RPB2, TEF1-alpha) and consequences for the taxonomy and nomenclature of this group were considered. Separate datasets with rDNA data only, single datasets for each of the protein-coding genes, and a combined five-marker dataset were analyzed. Molecular analyses recover a strongly supported trametoid clade that includes most of Trametes species (including the type T. suaveolens, the T. versicolor group, and mainly tropical species such as T. maxima and T. cubensis) together with species of Lenzites and Pycnoporus and Coriolopsis polyzona. Our data confirm the positions of Trametes cervina (= Trametopsis cervina) in the phlebioid clade and of Trametes trogii (= Coriolopsis trogii) outside the trametoid clade, closely related to Coriolopsis gallica. The genus Coriolopsis, as currently defined, is polyphyletic, with the type species as part of the trametoid clade and at least two additional lineages occurring in the core polyporoid clade. In view of these results the use of a single generic name (Trametes) for the trametoid clade is considered to be the best taxonomic and nomenclatural option as the morphological concept of Trametes would remain almost unchanged, few new nomenclatural combinations would be necessary, and the classification of additional species (i.e., not yet described and/or sampled for mo- lecular data) in Trametes based on morphological characters alone will still be possible. -
Spelling out Jaapia Species
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Digital.CSIC Mycol Progress (2015) 14: 57 DOI 10.1007/s11557-015-1081-8 ORIGINAL ARTICLE Spelling out Jaapia species M. Teresa Telleria 1 & Margarita Dueñas1 & Ireneia Melo2 & Isabel Salcedo3 & María P. Martín1 Received: 23 March 2015 /Revised: 16 June 2015 /Accepted: 22 June 2015 /Published online: 9 July 2015 # German Mycological Society and Springer-Verlag Berlin Heidelberg 2015. This article is published with open access at Springerlink.com Abstract Jaapia is a wood-saprobic genus of corticioid fungi Keywords Basidiomycota . Agaricomycetes . Jaapiales . for which two species have been recognized: J. argillacea Corticioid fungi . Taxonomy . Barcoding . ITS . Bres. and J. ochroleuca (Bres.) Nannf. & J. Erikss. Whereas Morphological diagnostic characters the first one is easily recognized by its characteristic spores, the descriptions of the second indicated variable spores, which once led us to believe that J. ochroleuca could be a species Introduction complex rather than a single species. Eleven new ITS nrDNA sequences of J. ochroleuca were aligned with two obtained Jaapia was described by Bresadola (1911)toaccommodate from GenBank and four of J. argillacea. The molecular re- J. argillacea Bres., and for 20 years, this monotypic genus sults, parsimony analysis and KP2 distances clearly delimitate was accepted by several authors (von Höhnel 1912; Wakefield one highly supported Jaapia clade, with two subclades that and Pearson 1920; Bourdot and Galzin 1923, 1928; Rogers correspond to the two described species. Morphological stud- 1935). Nannfeldt and Eriksson (1953)consideredConiophora ies, including the holotype and isotype of J. -
Climacodon Pulcherrimus a Badly Known Tropical Species, Present in Europe
Cryptogamie,Mycologie, 2007, 28 (1): 3-11 © 2007 Adac. Tous droits réservés Climacodon pulcherrimus a badly known tropical species, present in Europe Gabriel MORENOa*, María Natividad BLANCOa , Ibai OLARIAGAb &Julia CHECAa a Dpto. Biología Vegetal, Fac. Biología. Univ. de Alcalá, E-28871,Alcalá de Henares, Madrid. e-mail: [email protected] b Dpto. Biología Vegetal y Ecología (Botánica). Fac. Ciencias y Tecnología. Campus de Leioa. Univ. del País Vasco. Apartado 644. E-48080 Bilbao. Abstract – Climacodon pulcherrimus,apolymorphous species with a large distribution and habitat, is described macro- and microscopically. Its uncertain taxonomic position has led to the description of many synonymous species and placement in different genera. The type species of Hydnum pulcherrimum Berk. &M.A. Curtis is examined for the first time and it is compared with other collections from Malay Peninsula, Pakistan, USA and Spain. The study of Spanish collections enlarges the distribution to the South of Europe. Basidiomycota / Meruliaceae / Climacodon / Donkia / Hydnum / systematics / chorology / taxonomy INTRODUCTION In the last four years, we have collected some basidiomata of a saprophyte fungus with a basidioma of medium size, normally dimidiate with trametoid appearance and hydnoid hymenophore. Microscopically it is characterized by the presence of double or multiple clamp connections, ellipsoid basidiospores and absence of cystidia. Finally, we could determine it, with some difficulties, as a member of the genus Climacodon P. Karst., belonging to the family Meruliaceae P. Karst., order Polyporales Gäum. (Kirk et al., 2001). This genus includes species with conspicuous cystidia and hyphae with single clamp connections, with the only exception of C. pulcherrimus (Berk. -
Three Species of Wood-Decaying Fungi in <I>Polyporales</I> New to China
MYCOTAXON ISSN (print) 0093-4666 (online) 2154-8889 Mycotaxon, Ltd. ©2017 January–March 2017—Volume 132, pp. 29–42 http://dx.doi.org/10.5248/132.29 Three species of wood-decaying fungi in Polyporales new to China Chang-lin Zhaoa, Shi-liang Liua, Guang-juan Ren, Xiao-hong Ji & Shuanghui He* Institute of Microbiology, Beijing Forestry University, No. 35 Qinghuadong Road, Haidian District, Beijing 100083, P.R. China * Correspondence to: [email protected] Abstract—Three wood-decaying fungi, Ceriporiopsis lagerheimii, Sebipora aquosa, and Tyromyces xuchilensis, are newly recorded in China. The identifications were based on morphological and molecular evidence. The phylogenetic tree inferred from ITS+nLSU sequences of 49 species of Polyporales nests C. lagerheimii within the phlebioid clade, S. aquosa within the gelatoporia clade, and T. xuchilensis within the residual polyporoid clade. The three species are described and illustrated based on Chinese material. Key words—Basidiomycota, polypore, taxonomy, white rot fungus Introduction Wood-decaying fungi play a key role in recycling nutrients of forest ecosystems by decomposing cellulose, hemicellulose, and lignin of the plant cell walls (Floudas et al. 2015). Polyporales, a large order in Basidiomycota, includes many important genera of wood-decaying fungi. Recent molecular studies employing multi-gene datasets have helped to provide a phylogenetic overview of Polyporales, in which thirty-four valid families are now recognized (Binder et al. 2013). The diversity of wood-decaying fungi is very high in China because of the large landscape ranging from boreal to tropical zones. More than 1200 species of wood-decaying fungi have been found in China (Dai 2011, 2012), and some a Chang-lin Zhao and Shi-liang Liu contributed equally to this work and share first-author status 30 .. -
New Data on the Occurence of an Element Both
Analele UniversităĠii din Oradea, Fascicula Biologie Tom. XVI / 2, 2009, pp. 53-59 CONTRIBUTIONS TO THE KNOWLEDGE DIVERSITY OF LIGNICOLOUS MACROMYCETES (BASIDIOMYCETES) FROM CĂ3ĂğÂNII MOUNTAINS Ioana CIORTAN* *,,Alexandru. Buia” Botanical Garden, Craiova, Romania Corresponding author: Ioana Ciortan, ,,Alexandru Buia” Botanical Garden, 26 Constantin Lecca Str., zip code: 200217,Craiova, Romania, tel.: 0040251413820, e-mail: [email protected] Abstract. This paper presents partial results of research conducted between 2005 and 2009 in different forests (beech forests, mixed forests of beech with spruce, pure spruce) in CăSăĠânii Mountains (Romania). 123 species of wood inhabiting Basidiomycetes are reported from the CăSăĠânii Mountains, both saprotrophs and parasites, as identified by various species of trees. Keywords: diversity, macromycetes, Basidiomycetes, ecology, substrate, saprotroph, parasite, lignicolous INTRODUCTION MATERIALS AND METHODS The data presented are part of an extensive study, The research was conducted using transects and which will complete the PhD thesis. The CăSăĠânii setting fixed locations in some vegetable formations, Mountains are a mountain group of the ùureanu- which were visited several times a year beginning with Parâng-Lotru Mountains, belonging to the mountain the months April-May until October-November. chain of the Southern Carpathians. They are situated in Fungi were identified on the basis of both the SE parth of the Parâng Mountain, between OlteĠ morphological and anatomical properties of fruiting River in the west, Olt River in the east, Lotru and bodies and according to specific chemical reactions LaroriĠa Rivers in the north. Our area is 900 Km2 large using the bibliography [1-8, 10-13]. Special (Fig. 1). The vegetation presents typical levers: major presentation was made in phylogenetic order, the associations characteristic of each lever are present in system of classification used was that adopted by Kirk this massif. -
Identification and Tracking Activity of Fungus from the Antarctic Pole on Antagonistic of Aquatic Pathogenic Bacteria
INTERNATIONAL JOURNAL OF AGRICULTURE & BIOLOGY ISSN Print: 1560–8530; ISSN Online: 1814–9596 19F–079/2019/22–6–1311–1319 DOI: 10.17957/IJAB/15.1203 http://www.fspublishers.org Full Length Article Identification and Tracking Activity of Fungus from the Antarctic Pole on Antagonistic of Aquatic Pathogenic Bacteria Chuner Cai1,2,3, Haobing Yu1, Huibin Zhao2, Xiaoyu Liu1*, Binghua Jiao1 and Bo Chen4 1Department of Biochemistry and Molecular Biology, College of Basic Medicine, Naval Medical University, Shanghai, 200433, China 2College of Marine Ecology and Environment, Shanghai Ocean University, Shanghai, 201306, China 3Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Lianyungang, Jiangsu, 222005, China 4Polar Research Institute of China, Shanghai, 200136, China *For correspondence: [email protected] Abstract To seek the lead compound with the activity of antagonistic aquatic pathogenic bacteria in Antarctica fungi, the work identified species of a previously collected fungus with high sensitivity to Aeromonas hydrophila ATCC7966 and Streptococcus agalactiae. Potential active compounds were separated from fermentation broth by activity tracking and identified in structure by spectrum. The results showed that this fungus had common characteristics as Basidiomycota in morphology. According to 18S rDNA and internal transcribed space (ITS) DNA sequencing, this fungus was identified as Bjerkandera adusta in family Meruliaceae. Two active compounds viz., veratric acid and erythro-1-(3, 5-dichlone-4- methoxyphenyl)-1, 2-propylene glycol were identified by nuclear magnetic resonance spectrum and mass spectrum. Veratric acid was separated for the first time from any fungus, while erythro-1-(3, 5-dichlone-4-methoxyphenyl)-1, 2-propylene glycol was once reported in Bjerkandera. -
(12) Patent Application Publication (10) Pub. No.: US 2009/0005340 A1 Kristiansen (43) Pub
US 20090005340A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2009/0005340 A1 Kristiansen (43) Pub. Date: Jan. 1, 2009 54) BOACTIVE AGENTS PRODUCED BY 3O Foreigngn AppApplication PrioritVty Data SUBMERGED CULTIVATION OFA BASDOMYCETE CELL Jun. 15, 2005 (DK) ........................... PA 2005 OO881 Jan. 25, 2006 (DK)........................... PA 2006 OO115 (75) Inventor: Bjorn Kristiansen, Frederikstad Publication Classification (NO)NO (51) Int. Cl. Correspondence Address: A 6LX 3L/75 (2006.01) BROWDY AND NEIMARK, P.L.L.C. CI2P I/02 (2006.01) 624 NINTH STREET, NW A6IP37/00 (2006.01) SUTE 300 CI2P 19/04 (2006.01) WASHINGTON, DC 20001-5303 (US) (52) U.S. Cl. ............................ 514/54:435/171; 435/101 (57) ABSTRACT (73) Assignee: MediMush A/S, Horsholm (DK) - The invention in one aspect is directed to a method for culti (21) Appl. No.: 11/917,516 Vating a Basidiomycete cell in liquid culture medium, said method comprising the steps of providing a Basidiomycete (22) PCT Filed: Jun. 14, 2006 cell capable of being cultivated in a liquid growth medium, e - rs and cultivating the Basidiomycete cell under conditions (86). PCT No.: PCT/DK2OO6/OOO340 resulting in the production intracellularly or extracellularly of one or more bioactive agent(s) selected from the group con S371 (c)(1) sisting of oligosaccharides, polysaccharides, optionally gly (2), (4) Date: Ul. 31, 2008 cosylated peptides or polypeptides, oligonucleotides, poly s e a v-9 nucleotides, lipids, fatty acids, fatty acid esters, secondary O O metabolites Such as polyketides, terpenes, steroids, shikimic Related U.S. Application Data acids, alkaloids and benzodiazepine, wherein said bioactive (60) Provisional application No. -
Aurantiporus Alborubescens (Basidiomycota, Polyporales) – First Record in the Carpathians and Notes on Its Systematic Position
CZECH MYCOLOGY 66(1): 71–84, JUNE 4, 2014 (ONLINE VERSION, ISSN 1805-1421) Aurantiporus alborubescens (Basidiomycota, Polyporales) – first record in the Carpathians and notes on its systematic position 1 2 3 DANIEL DVOŘÁK ,JAN BĚŤÁK ,MICHAL TOMŠOVSKÝ 1Department of Botany and Zoology, Faculty of Science, Masaryk University, Kotlářská 2, CZ-611 37 Brno, Czech Republic; [email protected] 2Mášova 21, CZ-602 00 Brno, Czech Republic 3Faculty of Forestry and Wood Technology, Mendel University in Brno, Zemědělská 3, CZ-613 00 Brno, Czech Republic Dvořák D., Běťák J., Tomšovský M. (2014): Aurantiporus alborubescens (Basidio- mycota, Polyporales) – first record in the Carpathians and notes on its systematic position. – Czech Mycol. 66(1): 71–84. The authors present the first collection of the rare old-growth forest polypore Aurantiporus alborubescens in the Carpathians, supported by a description of macro- and microscopic features. Its European distribution and ecological demands are discussed. LSU rDNA sequences of the collected material were also analysed and compared with those of A. fissilis and A. croceus as well as some other polyporoid and corticioid species, in order to resolve the phylogenetic placement of the studied species. Based on the results of the molecular analysis, the homogeneity of the genus Aurantiporus Murrill in the sense of Jahn is questioned. Key words: Aurantiporus, phylogeny, old-growth forests, beech forests, indicator species. Dvořák D., Běťák J., Tomšovský M. (2014): Aurantiporus alborubescens (Basidio- mycota, Polyporales) – první nález v Karpatech a poznámky k jeho systematické- mu zařazení. – Czech Mycol. 66(1): 71–84. Autoři prezentují první nález vzácného choroše přirozených lesů, druhu Aurantiporus alboru- bescens, v Karpatech, doprovázený makroskopickým i mikroskopickým popisem. -
Improved Efficiency in Screening.Pdf
PLEASE NOTE! THIS IS SELF-ARCHIVED FINAL-DRAFT VERSION OF THE ORIGINAL ARTICLE To cite this Article: Kinnunen, A. Maijala, P., Järvinen, P. & Hatakka, A. 2017. Improved efficiency in screening for lignin-modifying peroxidases and laccases of basidiomycetes. Current Biotechnology 6 (2), 105–115. doi: 10.2174/2211550105666160330205138 URL:http://www.eurekaselect.com/140791/article Send Orders for Reprints to [email protected] Current Biotechnology, 2016, 5, 000-000 1 RESEARCH ARTICLE Improved Efficiency in Screening for Lignin-Modifying Peroxidases and Laccases of Basidiomycetes Anu Kinnunen1, Pekka Maijala2, Päivi Järvinen3 and Annele Hatakka1,* aDepartment of Food and Environmental Sciences, Faculty of Agriculture and Forestry, University of Helsinki, Finland; bSchool of Food and Agriculture, Applied University of Seinäjoki, Seinäjoki, Finland; cCentre for Drug Research, Division of Pharmaceutical Biosciences, Faculty of Pharmacy, University of Helsinki, Finland Abstract: Background: Wood rotting white-rot and litter-decomposing basidiomycetes form a huge reservoir of oxidative enzymes, needed for applications in the pulp and paper and textile industries and for bioremediation. Objective: The aim was (i) to achieve higher throughput in enzyme screening through miniaturization and automatization of the activity assays, and (ii) to discover fungi which produce efficient oxidoreductases for industrial purposes. Methods: Miniaturized activity assays mostly using dyes as substrate were carried Annele Hatakka A R T I C L E H I S T O R Y out for lignin peroxidase, versatile peroxidase, manganese peroxidase and laccase. Received: November 24, 2015 Methods were validated and 53 species of basidiomycetes were screened for lignin modifying enzymes Revised: March 15, 2016 Accepted: March 29, 2016 when cultivated in liquid mineral, soy, peptone and solid state oat husk medium. -
The New York Botanical Garden
Vol. XV DECEMBER, 1914 No. 180 JOURNAL The New York Botanical Garden EDITOR ARLOW BURDETTE STOUT Director of the Laboratories CONTENTS PAGE Index to Volumes I-XV »33 PUBLISHED FOR THE GARDEN AT 41 NORTH QUBKN STRHBT, LANCASTER, PA. THI NEW ERA PRINTING COMPANY OFFICERS 1914 PRESIDENT—W. GILMAN THOMPSON „ „ _ i ANDREW CARNEGIE VICE PRESIDENTS J FRANCIS LYNDE STETSON TREASURER—JAMES A. SCRYMSER SECRETARY—N. L. BRITTON BOARD OF- MANAGERS 1. ELECTED MANAGERS Term expires January, 1915 N. L. BRITTON W. J. MATHESON ANDREW CARNEGIE W GILMAN THOMPSON LEWIS RUTHERFORD MORRIS Term expire January. 1916 THOMAS H. HUBBARD FRANCIS LYNDE STETSON GEORGE W. PERKINS MVLES TIERNEY LOUIS C. TIFFANY Term expire* January, 1917 EDWARD D. ADAMS JAMES A. SCRYMSER ROBERT W. DE FOREST HENRY W. DE FOREST J. P. MORGAN DANIEL GUGGENHEIM 2. EX-OFFICIO MANAGERS THE MAYOR OP THE CITY OF NEW YORK HON. JOHN PURROY MITCHEL THE PRESIDENT OP THE DEPARTMENT OP PUBLIC PARES HON. GEORGE CABOT WARD 3. SCIENTIFIC DIRECTORS PROF. H. H. RUSBY. Chairman EUGENE P. BICKNELL PROF. WILLIAM J. GIES DR. NICHOLAS MURRAY BUTLER PROF. R. A. HARPER THOMAS W. CHURCHILL PROF. JAMES F. KEMP PROF. FREDERIC S. LEE GARDEN STAFF DR. N. L. BRITTON, Director-in-Chief (Development, Administration) DR. W. A. MURRILL, Assistant Director (Administration) DR. JOHN K. SMALL, Head Curator of the Museums (Flowering Plants) DR. P. A. RYDBERG, Curator (Flowering Plants) DR. MARSHALL A. HOWE, Curator (Flowerless Plants) DR. FRED J. SEAVER, Curator (Flowerless Plants) ROBERT S. WILLIAMS, Administrative Assistant PERCY WILSON, Associate Curator DR. FRANCIS W. PENNELL, Associate Curator GEORGE V.