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Nucleotide Excision Repair Gene ERCC2 and ERCC5 Variants Increase Risk of Uterine Cervical Cancer
pISSN 1598-2998, eISSN 2005-9256 Cancer Res Treat. 2016;48(2):708-714 http://dx.doi.org/10.4143/crt.2015.098 Original Article Open Access Nucleotide Excision Repair Gene ERCC2 and ERCC5 Variants Increase Risk of Uterine Cervical Cancer Jungnam Joo, PhD 1, Kyong-Ah Yoon, PhD 2, Tomonori Hayashi, PhD 3, Sun-Young Kong, MD, PhD 4, Hye-Jin Shin, MS 5, Boram Park, MS 1, Young Min Kim, PhD 6, Sang-Hyun Hwang, MD, PhD 7, Jeongseon Kim, PhD 8, Aesun Shin, MD, PhD 8,9 , Joo-Young Kim, MD, PhD 5,10 1Biometric Research Branch, 2Lung Cancer Branch, National Cancer Center, Goyang, Korea, 3Department of Radiobiology and Molecular Epidemiology, Radiation Effects Research Foundation, Hiroshima, Japan, 4Translational Epidemiology Research Branch and Department of Laboratory Medicine, 5Radiation Medicine Branch, National Cancer Center, Goyang, Korea, 6Department of Statistics, Radiation Effects Research Foundation, Hiroshima, Japan, 7Hematologic Malignancy Branch and Department of Laboratory Medicine, 8Molecular Epidemiology Branch, National Cancer Center, Goyang, 9Department of Preventive Medicine, Seoul National University College of Medicine, Seoul, 10 Center for Proton Therapy, Research Institute and Hospital, National Cancer Center, Goyang, Korea Supplementary Data Table of Contents Supplementary Fig. S1 ........................................................................................................................................................................... 2 Supplementary Table 1 ......................................................................................................................................................................... -
Paul Modrich Howard Hughes Medical Institute and Department of Biochemistry, Duke University Medical Center, Durham, North Carolina, USA
Mechanisms in E. coli and Human Mismatch Repair Nobel Lecture, December 8, 2015 by Paul Modrich Howard Hughes Medical Institute and Department of Biochemistry, Duke University Medical Center, Durham, North Carolina, USA. he idea that mismatched base pairs occur in cells and that such lesions trig- T ger their own repair was suggested 50 years ago by Robin Holliday in the context of genetic recombination [1]. Breakage and rejoining of DNA helices was known to occur during this process [2], with precision of rejoining attributed to formation of a heteroduplex joint, a region of helix where the two strands are derived from the diferent recombining partners. Holliday pointed out that if this heteroduplex region should span a genetic diference between the two DNAs, then it will contain one or more mismatched base pairs. He invoked processing of such mismatches to explain the recombination-associated phenomenon of gene conversion [1], noting that “If there are enzymes which can repair points of damage in DNA, it would seem possible that the same enzymes could recognize the abnormality of base pairing, and by exchange reactions rectify this.” Direct evidence that mismatches provoke a repair reaction was provided by bacterial transformation experiments [3–5], and our interest in this efect was prompted by the Escherichia coli (E. coli) work done in Matt Meselson’s lab at Harvard. Using artifcially constructed heteroduplex DNAs containing multiple mismatched base pairs, Wagner and Meselson [6] demonstrated that mismatches elicit a repair reaction upon introduction into the E. coli cell. Tey also showed that closely spaced mismatches, mismatches separated by a 1000 base pairs or so, are usually repaired on the same DNA strand. -
In Silico Characterization of a Novel Pathogenic Deletion Mutation
Nasir et al. Journal of Biomedical Science 2013, 20:70 http://www.jbiomedsci.com/content/20/1/70 RESEARCH Open Access In silico characterization of a novel pathogenic deletion mutation identified in XPA gene in a Pakistani family with severe xeroderma pigmentosum Muhammad Nasir1, Nafees Ahmad1, Christian MK Sieber2, Amir Latif3, Salman Akbar Malik4 and Abdul Hameed1* Abstract Background: Xeroderma Pigmentosum (XP) is a rare skin disorder characterized by skin hypersensitivity to sunlight and abnormal pigmentation. The aim of this study was to investigate the genetic cause of a severe XP phenotype in a consanguineous Pakistani family and in silico characterization of any identified disease-associated mutation. Results: The XP complementation group was assigned by genotyping of family for known XP loci. Genotyping data mapped the family to complementation group A locus, involving XPA gene. Mutation analysis of the candidate XP gene by DNA sequencing revealed a novel deletion mutation (c.654del A) in exon 5 of XPA gene. The c.654del A, causes frameshift, which pre-maturely terminates protein and result into a truncated product of 222 amino acid (aa) residues instead of 273 (p.Lys218AsnfsX5). In silico tools were applied to study the likelihood of changes in structural motifs and thus interaction of mutated protein with binding partners. In silico analysis of mutant protein sequence, predicted to affect the aa residue which attains coiled coil structure. The coiled coil structure has an important role in key cellular interactions, especially with DNA damage-binding protein 2 (DDB2), which has important role in DDB-mediated nucleotide excision repair (NER) system. -
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CCR PEDIATRIC ONCOLOGY SERIES CCR Pediatric Oncology Series Recommendations for Childhood Cancer Screening and Surveillance in DNA Repair Disorders Michael F. Walsh1, Vivian Y. Chang2, Wendy K. Kohlmann3, Hamish S. Scott4, Christopher Cunniff5, Franck Bourdeaut6, Jan J. Molenaar7, Christopher C. Porter8, John T. Sandlund9, Sharon E. Plon10, Lisa L. Wang10, and Sharon A. Savage11 Abstract DNA repair syndromes are heterogeneous disorders caused by around the world to discuss and develop cancer surveillance pathogenic variants in genes encoding proteins key in DNA guidelines for children with cancer-prone disorders. Herein, replication and/or the cellular response to DNA damage. The we focus on the more common of the rare DNA repair dis- majority of these syndromes are inherited in an autosomal- orders: ataxia telangiectasia, Bloom syndrome, Fanconi ane- recessive manner, but autosomal-dominant and X-linked reces- mia, dyskeratosis congenita, Nijmegen breakage syndrome, sive disorders also exist. The clinical features of patients with DNA Rothmund–Thomson syndrome, and Xeroderma pigmento- repair syndromes are highly varied and dependent on the under- sum. Dedicated syndrome registries and a combination of lying genetic cause. Notably, all patients have elevated risks of basic science and clinical research have led to important in- syndrome-associated cancers, and many of these cancers present sights into the underlying biology of these disorders. Given the in childhood. Although it is clear that the risk of cancer is rarity of these disorders, it is recommended that centralized increased, there are limited data defining the true incidence of centers of excellence be involved directly or through consulta- cancer and almost no evidence-based approaches to cancer tion in caring for patients with heritable DNA repair syn- surveillance in patients with DNA repair disorders. -
EXTENDED CARRIER SCREENING Peace of Mind for Planned Pregnancies
Focusing on Personalised Medicine EXTENDED CARRIER SCREENING Peace of Mind for Planned Pregnancies Extended carrier screening is an important tool for prospective parents to help them determine their risk of having a child affected with a heritable disease. In many cases, parents aren’t aware they are carriers and have no family history due to the rarity of some diseases in the general population. What is covered by the screening? Genomics For Life offers a comprehensive Extended Carrier Screening test, providing prospective parents with the information they require when planning their pregnancy. Extended Carrier Screening has been shown to detect carriers who would not have been considered candidates for traditional risk- based screening. With a simple mouth swab collection, we are able to test for over 419 genes associated with inherited diseases, including Fragile X Syndrome, Cystic Fibrosis and Spinal Muscular Atrophy. The assay has been developed in conjunction with clinical molecular geneticists, and includes genes listed in the NIH Genetic Test Registry. For a list of genes and disorders covered, please see the reverse of this brochure. If your gene of interest is not covered on our Extended Carrier Screening panel, please contact our friendly team to assist you in finding a gene test panel that suits your needs. Why have Extended Carrier Screening? Extended Carrier Screening prior to pregnancy enables couples to learn about their reproductive risk and consider a complete range of reproductive options, including whether or not to become pregnant, whether to use advanced reproductive technologies, such as preimplantation genetic diagnosis, or to use donor gametes. -
A Mutation in the XPBIERCC3 DNA Repair Transcription Gene, Associated with Trichothiodystrophy
Am. J. Hum. Genet. 60:320-329, 1997 A Mutation in the XPBIERCC3 DNA Repair Transcription Gene, Associated with Trichothiodystrophy G. Weeda,' E. Eveno,2 1. Donker,' W. Vermeulen,' 0. Chevallier-Lagente,2 A. Tafeb,3 A. Stary,2 J. H. J. Hoeijmakers,1 M. Mezzina,2 and A. Sarasin2 'MGC-Department of Cell Biology and Genetics, Erasmus University, Rotterdam; 2Laboratory of Molecular Genetics, UPR 42 Institut Federatif CNRS-IFC1 -Institut de Recherches sur le Cancer, Vilejuif, France; and 'Unit6 de Dermatologie P6diatrique, Centre Hospitalier Universitaire, Groupe Pellegrin, Hopital des Enfants, Bordeaux Summary Introduction Trichothiodystrophy (TD1) is a rare, autosomal recessive disorder characterized by sulfur-deficient brittle hair and To counteract the deleterious effects of mutagenic and nails, mental retardation, impaired sexual development, and carcinogenic agents, all organisms are equipped with a ichthyosis. Photosensitivity has been reported in -50% of sophisticated network of DNA repair systems that is the cases, but no skin cancer is associated with TI). Virtu- essential for genetic stability. Nucleotide excision repair ally all photosensitive ID patients have a deficiency in (NER)-one of the most studied repair pathways-re- the nucleotide excision repair (NER) of UV-induced DNA moves a wide diversity of DNA lesions, including UV- damage that is indistinguishable from that of xeroderma induced lesions, in a multistep process (Hoeijmakers pigmentosum (XP) complementation group D (XP-D) pa- 1993). tients. DNA repair defects in XP-D are associated with two Two subpathways are recognized in NER: a rapid additional, quite different diseases; XP, a sun-sensitive and preferential repair of the transcribed strand of active cancer-prone repair disorder, and Cockayne syndrome (CS), genes ("transcription-coupled repair") and the less effi- a photosensitive condition characterized by physical and cient global genome repair process (Bohr 1991; Hana- mental retardation and wizened facial appearance. -
Identification of Novel Pathogenic MSH2 Mutation and New DNA Repair Genes Variants: Investigation of a Tunisian Lynch Syndrome F
Jaballah‑Gabteni et al. J Transl Med (2019) 17:212 https://doi.org/10.1186/s12967‑019‑1961‑9 Journal of Translational Medicine RESEARCH Open Access Identifcation of novel pathogenic MSH2 mutation and new DNA repair genes variants: investigation of a Tunisian Lynch syndrome family with discordant twins Amira Jaballah‑Gabteni1,3* , Haifa Tounsi1,3, Maria Kabbage1,3, Yosr Hamdi3, Sahar Elouej3,4, Ines Ben Ayed1,3, Mouna Medhioub2, Moufda Mahmoudi2, Hamza Dallali3, Hamza Yaiche1,3, Nadia Ben Jemii1,3, Affa Maaloul1, Najla Mezghani1,3, Sonia Abdelhak3, Lamine Hamzaoui2, Mousaddak Azzouz2 and Samir Boubaker1,3 Abstract Background: Lynch syndrome (LS) is a highly penetrant inherited cancer predisposition syndrome, characterized by autosomal dominant inheritance and germline mutations in DNA mismatch repair genes. Despite several genetic variations that have been identifed in various populations, the penetrance is highly variable and the reasons for this have not been fully elucidated. This study investigates whether, besides pathogenic mutations, environment and low penetrance genetic risk factors may result in phenotype modifcation in a Tunisian LS family. Patients and methods: A Tunisian family with strong colorectal cancer (CRC) history that fulfll the Amsterdam I criteria for the diagnosis of Lynch syndrome was proposed for oncogenetic counseling. The index case was a man, diagnosed at the age of 33 years with CRC. He has a monozygotic twin diagnosed at the age of 35 years with crohn disease. Forty‑seven years‑old was the onset age of his paternal uncle withCRC. An immunohistochemical (IHC) labe‑ ling for the four proteins (MLH1, MSH2, MSH6 and PMS2) of the MisMatchRepair (MMR) system was performed for the index case. -
RAD51 Paralogs Promote Genomic Integrity and Chemoresistance in Cancer by Facilitating Homologous Recombination
122 Editorial Page 1 of 6 RAD51 paralogs promote genomic integrity and chemoresistance in cancer by facilitating homologous recombination Janelle Louise Harris, Andrea Rabellino, Kum Kum Khanna QIMR Berghofer Medical Research Institute, Brisbane, Queensland, Australia Correspondence to: Kum Kum Khanna. QIMR Berghofer Medical Research Institute, Brisbane, Queensland, Australia. Email: [email protected]. Provenance: This is an invited Editorial commissioned by Section Editor Yazhou He, MD (Institute of Genetics and Molecular Medicine, Western General Hospital/Usher Institute of Population Health Sciences, University of Edinburgh, Edinburgh, UK). Comment on: Chen X, Li Y, Ouyang T, et al. Associations between RAD51D germline mutations and breast cancer risk and survival in BRCA1/2- negative breast cancers. Ann Oncol 2018;29:2046-51. Submitted Nov 30, 2018. Accepted for publication Dec 10, 2018. doi: 10.21037/atm.2018.12.30 View this article at: http://dx.doi.org/10.21037/atm.2018.12.30 Cancer is a major health burden, however advances in early a loss of function mutation in the DDR gene RAD51D, diagnosis and improved surgery and therapeutic options while such mutations were detected in 0.1% of the healthy have improved outcomes over the past several decades. population. For example, RAD51D mutation carriers had Nevertheless, many radiological and chemotherapeutic higher grade cancers and early relapse compared to wild treatments yield severe side effects, while relapse and types, implicating RAD51D loss as rare but penetrant breast subsequent outgrowth of treatment resistant tumours cancer mutation associated with more aggressive disease. is common. The majority of cancer treatments rely on During cancer progression the disruption of normal inhibition of cancer cells pro-growth signalling, blocking DDR drives accumulation of additional genetic defects that proliferation or inducing DNA damage. -
Association of Smoking and XPG, CYP1A1, OGG1, ERCC5, ERCC1, MMP2, and MMP9 Gene Polymorphisms with the Early Detection and Occurrence of Laryngeal Squamous Carcinoma
Journal of Cancer 2018, Vol. 9 968 Ivyspring International Publisher Journal of Cancer 2018; 9(6): 968-977. doi: 10.7150/jca.22841 Research Paper Association of Smoking and XPG, CYP1A1, OGG1, ERCC5, ERCC1, MMP2, and MMP9 Gene Polymorphisms with the early detection and occurrence of Laryngeal Squamous Carcinoma Yi Zhu1, Luo Guo2, ShengZi Wang1,Qun Yu3, JianXiong Lu3 1. Department of Radiation Oncology of Shanghai Eye and ENT Hospital of Fudan University, Shanghai, 200031, China 2. Department of Experiment centre of Shanghai Eye and ENT Hospital of Fudan University, Shanghai,200031, China 3. Department of TianPing health service centre of Shanghai,Shanghai,200031,China Corresponding author: ShengZi Wang, Mail address: Department of Radiation Oncology of Shanghai, Eye and ENT Hospital of Fudan University, Shanghai 200031, China. Telephone: 8618917761761; Email: [email protected] © Ivyspring International Publisher. This is an open access article distributed under the terms of the Creative Commons Attribution (CC BY-NC) license (https://creativecommons.org/licenses/by-nc/4.0/). See http://ivyspring.com/terms for full terms and conditions. Received: 2017.09.16; Accepted: 2018.01.16; Published: 2018.02.28 Abstract A total of 200 smoking-related laryngeal carcinoma patients with pathology confirmation from the Eye and ENT Hospital and 190 high-risk smokers were included in a survey. All of the participants had a smoking index greater than 400 (cigarettes/day*year.) We obtained data on clinical and baseline characteristics, and peripheral blood was obtained and subjected to DNA extraction to analyse the correlation between smoking and the occurrence of laryngeal carcinoma. We selected candidate genes and SNP fragments that were found to be closely associated with smoking-related tumours in preliminary studies. -
A Dissertation Entitled the Role of Base Excision Repair And
A Dissertation Entitled The Role of Base Excision Repair and Mismatch Repair Proteins in the Processing of Cisplatin Interstrand Cross-Links. by Akshada Sawant Submitted to the Graduate Faculty as partial fulfillment of the requirements for the Doctor of Philosophy Degree in Biomedical Science Dr. Stephan M. Patrick, Committee Chair Dr. Kandace Williams, Committee Member Dr. William Maltese, Committee Member Dr. Manohar Ratnam, Committee Member Dr. David Giovannucci, Committee Member Dr. Patricia R. Komuniecki, Dean College of Graduate Studies The University of Toledo August 2014 Copyright 2014, Akshada Sawant This document is copyrighted material. Under copyright law, no parts of this document may be reproduced without the expressed permission of the author. An Abstract of The Role of Base Excision Repair and Mismatch Repair Proteins in the Processing of Cisplatin Interstrand Cross-Links By Akshada Sawant Submitted to the Graduate Faculty as partial fulfillment of the requirements for the Doctor of Philosophy Degree in Biomedical Science The University of Toledo August 2014 Cisplatin is a well-known anticancer agent that forms a part of many combination chemotherapeutic treatments used against a variety of human cancers. Despite successful treatment, the development of resistance is the major limitation of the cisplatin based therapy. Base excision repair modulates cisplatin cytotoxicity. Moreover, mismatch repair deficiency gives rise to cisplatin resistance and leads to poor prognosis of the disease. Various models have been proposed to explain this low level of resistance caused due to loss of MMR proteins. In our previous studies, we have shown that BER processing of the cisplatin ICLs is mutagenic. Our studies showed that these mismatches lead to the activation and the recruitment of mismatch repair proteins. -
Disease Reference Book
The Counsyl Foresight™ Carrier Screen 180 Kimball Way | South San Francisco, CA 94080 www.counsyl.com | [email protected] | (888) COUNSYL The Counsyl Foresight Carrier Screen - Disease Reference Book 11-beta-hydroxylase-deficient Congenital Adrenal Hyperplasia .................................................................................................................................................................................... 8 21-hydroxylase-deficient Congenital Adrenal Hyperplasia ...........................................................................................................................................................................................10 6-pyruvoyl-tetrahydropterin Synthase Deficiency ..........................................................................................................................................................................................................12 ABCC8-related Hyperinsulinism........................................................................................................................................................................................................................................ 14 Adenosine Deaminase Deficiency .................................................................................................................................................................................................................................... 16 Alpha Thalassemia............................................................................................................................................................................................................................................................. -
(UV-DDB) Dimerization and Its Roles in Chromatinized DNA Repair
Damaged DNA induced UV-damaged DNA-binding protein (UV-DDB) dimerization and its roles in chromatinized DNA repair Joanne I. Yeha,b,1, Arthur S. Levinec,d, Shoucheng Dua, Unmesh Chintea, Harshad Ghodkee, Hong Wangd,e, Haibin Shia, Ching L. Hsiehc,d, James F. Conwaya, Bennett Van Houtend,e, and Vesna Rapić-Otrinc,d aDepartments of Structural Biology, bBioengineering, cMicrobiology and Molecular Genetics, ePharmacology and Chemical Biology, and dUniversity of Pittsburgh Cancer Institute, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260 AUTHOR SUMMARY Exposure to UV radiation (DDB1-CUL4A DDB2) with can damage DNA that if chromatin modification and left unrepaired can cause the subsequent steps in the mutations leading to skin repair pathway. aging and skin cancer. In Here we report the crystal humans, the nucleotide structure of the full-length excision repair (NER) * human DDB2 bound to proteins function to damaged DNA in a complex recognize and repair with human DDB1 (Fig. P1). UV-damaged DNA. Defects While a large portion of the in DNA repair caused by N-terminal region of the mutations of these repair zebrafish DDB2 in the proteins have been linked earlier structure could not to several genetic diseases, be modeled, we have characterized by cancer resolved the 3D structure of predisposition (xeroderma the N-terminal domain of pigmentosum, XP) or DDB2. Our structure reveals premature aging (Cockayne secondary interactions syndrome), illustrating the between the N-terminal Fig. P1. Composite model of a dimeric DDB1-CUL4ADDB2 ubiquitin functional significance of DDB2 domain of DDB2 and a ligase-nucleosome complex. A model of a dimeric DDB1-CUL4A in a neighboring repair proteins to genomic complex with a nucleosome core particle, generated according to the relative integrity.