Hydrothermal Disintegration and Extraction of Different Microalgae Species
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												  Cell Wall Chemistry Roger M3 Cell Wall Chemistry Roger M. Rowell1,3, Roger Pettersen1, James S. Han1, Jeffrey S. Rowell2, and Mandla A. Tshabalala 1USDA, Forest Service, Forest Products Laboratory, Madison, WI 2Department of Forest Ecology and Management, University of Wisconsin, Madison, WI 3Department of Biological Systems Engineering, University of Wisconsin, Madison, WI CONTENTS 3.1 Carbohydrate Polymers ..........................................................................................................37 3.1.1 Holocellulose ..............................................................................................................37 3.1.2 Cellulose .....................................................................................................................37 3.1.3 Hemicelluloses............................................................................................................39 3.1.3.1 Hardwood Hemicelluloses ..........................................................................41 3.1.3.2 Softwood Hemicelluloses............................................................................42 3.1.4 Other Minor Polysaccharides .....................................................................................43 3.2 Lignin......................................................................................................................................43 3.3 Extractives ..............................................................................................................................45 3.4 Bark.........................................................................................................................................46
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												  The Origin of Alternation of Generations in Land PlantsTheoriginof alternation of generations inlandplants: afocuson matrotrophy andhexose transport Linda K.E.Graham and LeeW .Wilcox Department of Botany,University of Wisconsin, 430Lincoln Drive, Madison,WI 53706, USA (lkgraham@facsta¡.wisc .edu ) Alifehistory involving alternation of two developmentally associated, multicellular generations (sporophyteand gametophyte) is anautapomorphy of embryophytes (bryophytes + vascularplants) . Microfossil dataindicate that Mid ^Late Ordovicianland plants possessed such alifecycle, and that the originof alternationof generationspreceded this date.Molecular phylogenetic data unambiguously relate charophyceangreen algae to the ancestryof monophyletic embryophytes, and identify bryophytes as early-divergentland plants. Comparison of reproduction in charophyceans and bryophytes suggests that the followingstages occurredduring evolutionary origin of embryophytic alternation of generations: (i) originof oogamy;(ii) retention ofeggsand zygotes on the parentalthallus; (iii) originof matrotrophy (regulatedtransfer ofnutritional and morphogenetic solutes fromparental cells tothe nextgeneration); (iv)origin of a multicellularsporophyte generation ;and(v) origin of non-£ agellate, walled spores. Oogamy,egg/zygoteretention andmatrotrophy characterize at least some moderncharophyceans, and arepostulated to represent pre-adaptativefeatures inherited byembryophytes from ancestral charophyceans.Matrotrophy is hypothesizedto have preceded originof the multicellularsporophytes of plants,and to represent acritical innovation.Molecular
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												  Cell Wall Ribosomes Nucleus Chloroplast CytoplasmCell Wall Ribosomes Nucleus Nickname: Protector Nickname: Protein Maker Nickname: Brain The cell wall is the outer covering of a Plant cell. It is Ribosomes read the recipe from the The nucleus is the largest organelle in a cell. The a strong and stiff and made of DNA and use this recipe to make nucleus directs all activity in the cell. It also controls cellulose. It supports and protects the plant cell by proteins. The nucleus tells the the growth and reproduction of the cell. holding it upright. It ribosomes which proteins to make. In humans, the nucleus contains 46 chromosomes allows water, oxygen and carbon dioxide to pass in out They are found in both plant and which are the instructions for all the activities in your of plant cell. animal cells. In a cell they can be found cell and body. floating around in the cytoplasm or attached to the endoplasmic reticulum. Chloroplast Cytoplasm Endoplasmic Reticulum Nickname: Oven Nickname: Gel Nickname: Highway Chloroplasts are oval structures that that contain a green Cytoplasm is the gel like fluid inside a The endoplasmic reticulum (ER) is the transportation pigment called chlorophyll. This allows plants to make cell. The organelles are floating around in center for the cell. The ER is like the conveyor belt, you their own food through the process of photosynthesis. this fluid. would see at a supermarket, except instead of moving your groceries it moves proteins from one part of the cell Chloroplasts are necessary for photosynthesis, the food to another. The Endoplasmic Reticulum looks like a making process, to occur.
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												  Cephaleuros Species, the Plant-Parasitic Green AlgaePlant Disease Aug. 2008 PD-43 Cephaleuros Species, the Plant-Parasitic Green Algae Scot C. Nelson Department of Plant and Environmental Protection Sciences ephaleuros species are filamentous green algae For information on other Cephaleuros species and and parasites of higher plants. In Hawai‘i, at least their diseases in our region, please refer to the technical twoC of horticultural importance are known: Cephaleu- report by Fred Brooks (in References). To see images of ros virescens and Cephaleuros parasiticus. Typically Cephaleuros minimus on noni in American Samoa, visit harmless, generally causing minor diseases character- the Hawai‘i Pest and Disease Image Gallery (www.ctahr. ized by negligible leaf spots, on certain crops in moist hawaii.edu/nelsons/Misc), and click on “noni.” environments these algal diseases can cause economic injury to plant leaves, fruits, and stems. C. virescens is The pathogen the most frequently reported algal pathogen of higher The disease is called algal leaf spot, algal fruit spot, and plants worldwide and has the broadest host range among green scurf; Cephaleuros infections on tea and coffee Cephaleuros species. Frequent rains and warm weather plants have been called “red rust.” These are aerophilic, are favorable conditions for these pathogens. For hosts, filamentous green algae. Although aerophilic and ter- poor plant nutrition, poor soil drainage, and stagnant air restrial, they require a film of water to complete their are predisposing factors to infection by the algae. life cycles. The genus Cephaleuros is a member of the Symptoms and crop damage can vary greatly depend- Trentepohliales and a unique order, Chlorophyta, which ing on the combination of Cephaleuros species, hosts and contains the photosynthetic organisms known as green environments.
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												  Photosynthesis... Using Algae Wrapped in Jelly BallsStudent Sheet 23 www.saps.org.uk Photosynthesis... using algae wrapped in jelly balls Algae can be considered as one-celled plants, and they usually live in water. You are going to use algae to look at the rate of photosynthesis. The algae are tiny and are difficult to work with directly in the water so the first part of the practical involves ‘immobilising’ the algae. This effectively traps large numbers of algal cells in ‘jelly like’ balls so that we can keep them in one place and not lose them. We use sodium alginate to help make the jelly. Sodium alginate is not harmful to the algae. When these algae are ‘wrapped up’ in the jelly balls they are excellent to use in experiments on photosynthesis. These algal balls are: • cheap to grow and easy to make – you will be able to make hundreds in a very short time • easy to get a standard quantity of plant material because each of the balls is approximately the same volume • easy to keep alive for several weeks so you can keep them for future experiments 1. First you need to obtain a 2. Now you have millions of algal 3. Finally we’re going to make the concentrated suspension of algae. cells in a small volume of liquid. balls… Do this by removing some of the It’s time to mix them into your liquid medium in which they are ‘jelly’. Pour the green mixture through growing in one of two ways. an open-ended syringe into a 2% Pour about 2.5cm3 of jelly (sodium solution of calcium chloride.
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												  CYANOBACTERIA (BLUE-GREEN ALGAE) BLOOMS When in Doubt, It’S Best to Keep Out!Cyanobacteria Blooms FAQs CYANOBACTERIA (BLUE-GREEN ALGAE) BLOOMS When in doubt, it’s best to keep out! What are cyanobacteria? Cyanobacteria, also called blue-green algae, are microscopic organisms found naturally in all types of water. These single-celled organisms live in fresh, brackish (combined salt and fresh water), and marine water. These organisms use sunlight to make their own food. In warm, nutrient-rich (high in phosphorus and nitrogen) environments, cyanobacteria can multiply quickly, creating blooms that spread across the water’s surface. The blooms might become visible. How are cyanobacteria blooms formed? Cyanobacteria blooms form when cyanobacteria, which are normally found in the water, start to multiply very quickly. Blooms can form in warm, slow-moving waters that are rich in nutrients from sources such as fertilizer runoff or septic tank overflows. Cyanobacteria blooms need nutrients to survive. The blooms can form at any time, but most often form in late summer or early fall. What does a cyanobacteria bloom look like? You might or might not be able to see cyanobacteria blooms. They sometimes stay below the water’s surface, they sometimes float to the surface. Some cyanobacteria blooms can look like foam, scum, or mats, particularly when the wind blows them toward a shoreline. The blooms can be blue, bright green, brown, or red. Blooms sometimes look like paint floating on the water’s surface. As cyanobacteria in a bloom die, the water may smell bad, similar to rotting plants. Why are some cyanbacteria blooms harmful? Cyanobacteria blooms that harm people, animals, or the environment are called cyanobacteria harmful algal blooms.
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												  The Structure, Function, and Biosynthesis of Plant Cell Wall Pectic PolysaccharidesCarbohydrate Research 344 (2009) 1879–1900 Contents lists available at ScienceDirect Carbohydrate Research journal homepage: www.elsevier.com/locate/carres The structure, function, and biosynthesis of plant cell wall pectic polysaccharides Kerry Hosmer Caffall a, Debra Mohnen a,b,* a University of Georgia, Department of Biochemistry and Molecular Biology and Complex Carbohydrate Research Center, 315 Riverbend Road Athens, GA 30602, United States b DOE BioEnergy Science Center (BESC), 315 Riverbend Road Athens, GA 30602, United States article info abstract Article history: Plant cell walls consist of carbohydrate, protein, and aromatic compounds and are essential to the proper Received 18 November 2008 growth and development of plants. The carbohydrate components make up 90% of the primary wall, Received in revised form 4 May 2009 and are critical to wall function. There is a diversity of polysaccharides that make up the wall and that Accepted 6 May 2009 are classified as one of three types: cellulose, hemicellulose, or pectin. The pectins, which are most abun- Available online 2 June 2009 dant in the plant primary cell walls and the middle lamellae, are a class of molecules defined by the pres- ence of galacturonic acid. The pectic polysaccharides include the galacturonans (homogalacturonan, Keywords: substituted galacturonans, and RG-II) and rhamnogalacturonan-I. Galacturonans have a backbone that Cell wall polysaccharides consists of -1,4-linked galacturonic acid. The identification of glycosyltransferases involved in pectin Galacturonan a Glycosyltransferases synthesis is essential to the study of cell wall function in plant growth and development and for maxi- Homogalacturonan mizing the value and use of plant polysaccharides in industry and human health.
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												  IAWA Bulletin N.S., Vol. 3 (1),1982 3 ANTONI V an LEEUWENHOEKIAWA Bulletin n.s., Vol. 3 (1),1982 3 ANTONI VAN LEEUWENHOEK AND HIS OBSERVATION ON THE STRUCTURE OF THE WOODY CELL WALL by Pieter Baas Rijksherbarium, Leiden, The Netherlands Summary Following general remarks on the life of Van be traced back to negative but ill-informed Leeuwenhoek and his role in wood anatomy, judgements in some authoritative 19th and his account of the structure of a torn vessel 20th century publications (Baas, 1982a, b). wall of nutmeg rootwood is discussed in detail. Van Leeuwenhoek should be credited with The cross-wise orientation of minute 'vessels or many detailed and original wood and bark ana fibres' as observed and interpreted by Van tomical observations, but his work is not easily Leeuwenhoek can be considered to be the first accessible, being scattered in numerous letters, (unintentional) correct record of the fibrillar most of them also dealing with other microsco nature of the woody cell wall. pic subjects. Although most of these letters were published in various instalments and sev Introduction eral languages during Van Leeuwenhoek's life Antoni van Leeuwenhoek was born in 1632, time, this presentation cannot compete with 350 years ago, in Delft (the Netherlands) as the the balanced treatises by Grew and Malpighi, son of a basket maker. Apprenticed to a cloth who each published books solely dealing with merchant, Van Leeuwenhoek's career started as plant structure and function. a shopkeeper. Later he would serve as usher to Interest in Van Leeuwenhoek's plant anato the aldermen, chief warden and wine-gauger of mical work has recently also been revived by the City of Delft, and surveyor to the Court of the rediscovery of some of his sections among Holland.
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												  Brown Algae and 4) the Oomycetes (Water Molds)Protista Classification Excavata The kingdom Protista (in the five kingdom system) contains mostly unicellular eukaryotes. This taxonomic grouping is polyphyletic and based only Alveolates on cellular structure and life styles not on any molecular evidence. Using molecular biology and detailed comparison of cell structure, scientists are now beginning to see evolutionary SAR Stramenopila history in the protists. The ongoing changes in the protest phylogeny are rapidly changing with each new piece of evidence. The following classification suggests 4 “supergroups” within the Rhizaria original Protista kingdom and the taxonomy is still being worked out. This lab is looking at one current hypothesis shown on the right. Some of the organisms are grouped together because Archaeplastida of very strong support and others are controversial. It is important to focus on the characteristics of each clade which explains why they are grouped together. This lab will only look at the groups that Amoebozoans were once included in the Protista kingdom and the other groups (higher plants, fungi, and animals) will be Unikonta examined in future labs. Opisthokonts Protista Classification Excavata Starting with the four “Supergroups”, we will divide the rest into different levels called clades. A Clade is defined as a group of Alveolates biological taxa (as species) that includes all descendants of one common ancestor. Too simplify this process, we have included a cladogram we will be using throughout the SAR Stramenopila course. We will divide or expand parts of the cladogram to emphasize evolutionary relationships. For the protists, we will divide Rhizaria the supergroups into smaller clades assigning them artificial numbers (clade1, clade2, clade3) to establish a grouping at a specific level.
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												  Primary and Secondary Plant Cell Walls: a Comparative Overview*36 New Zealand Journal of Forestry Science 36(1) PRIMARY AND SECONDARY PLANT CELL WALLS: A COMPARATIVE OVERVIEW* PHILIP J. HARRIS School of Biological Sciences, The University of Auckland Private Bag 92019, Auckland, New Zealand [email protected] (Received for publication 23 November 2005; revision 3 February 2006) ABSTRACT Light and transmission electron microscopy are used in studying wall morphology and histochemical methods, including immunocytochemistry, can be used to locate specific compounds in walls. All plant cell walls contain a fibrillar phase of cellulose microfibrils and a matrix phase which contains a high proportion of non-cellulosic polysaccharides that vary in their chemical structures, depending on wall type and plant taxon. The non-cellulosic polysaccharide compositions of three common wall types — lignified secondary walls, non-lignified secondary walls, and non-lignified primary walls — exemplify this. The principles used in constructing the most recent models of non-lignified primary walls can be used in modelling lignified secondary walls. Keywords: primary cell walls; secondary cell walls; cell-wall models; non- cellulosic polysaccharides; transmission electron microscopy; light microscopy; chemistry; lignified walls; immuno- cytochemistry; histochemistry INTRODUCTION This review provides a brief comparative overview of primary and secondary cell walls of seed plants. A primary wall is defined as a wall that is deposited while the cell is still enlarging, whereas a secondary wall is deposited on the primary wall after cell expansion has stopped, and can be seen in sections as a structurally distinct layer (or layers) that is often very much thicker than the primary wall (Harris 2005a). At maturity, the different cell types can be grouped according to whether they have only a primary wall or both a primary and a secondary wall.
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												  Algae and Lakes Algae Are Primitive, Usually Microscopic, Organisms Found in Every LakeAlgae and Lakes Algae are primitive, usually microscopic, organisms found in every lake. Like green plants, most algae have pigments that allow them to create energy from sunlight through the process of photosynthesis. Algae use this energy and nutrients such as nitrogen and phosphorus to grow and reproduce. Algae form the base of the food web in lakes. Small animals called zooplankton feed on algae. In Drawings from IFAS, Center for Aquatic Plants, turn, zooplankton become food for fish. Algae University of Florida, 1990; and U.S. Soil Conservation Service, Water Quality Indicators Guide: Surface Waters, also produce some of the oxygen found in lake 1989. water and in the atmosphere What types of algae live in my lake? There are thousands of species of freshwater algae living in lakes around the world. Most species of algae in Snohomish County lakes are free-floating, collectively known as phytoplankton. There are also many species of algae that attach to rocks, docks, and aquatic plants, called periphyton. There are three main groups of algae—the green algae (Chlorophyta), the golden brown algae (Chrysophyta) which also includes a large group called diatoms, and A typical microscopic view of algae found in local lakes the blue-green algae (Cyanobacteria)—as well as several smaller groups (euglenoids, cryptomonads, and dinoflagellates). Under the microscope, many algae have beautiful shapes and colors. Algae are important for healthy lakes. Without algae, your lake would likely be devoid of fish and other wildlife. Most algae are inconspicuous and do not cause problems. Unfortunately, a few types of algae can cause water quality problems in lakes.
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												  Cell Structure and Function in the Bacteria and Archaea4 Chapter Preview and Key Concepts 4.1 1.1 DiversityThe Beginnings among theof Microbiology Bacteria and Archaea 1.1. •The BacteriaThe are discovery classified of microorganismsinto several Cell Structure wasmajor dependent phyla. on observations made with 2. theThe microscope Archaea are currently classified into two 2. •major phyla.The emergence of experimental 4.2 Cellscience Shapes provided and Arrangements a means to test long held and Function beliefs and resolve controversies 3. Many bacterial cells have a rod, spherical, or 3. MicroInquiryspiral shape and1: Experimentation are organized into and a specific Scientificellular c arrangement. Inquiry in the Bacteria 4.31.2 AnMicroorganisms Overview to Bacterialand Disease and Transmission Archaeal 4.Cell • StructureEarly epidemiology studies suggested how diseases could be spread and 4. Bacterial and archaeal cells are organized at be controlled the cellular and molecular levels. 5. • Resistance to a disease can come and Archaea 4.4 External Cell Structures from exposure to and recovery from a mild 5.form Pili allowof (or cells a very to attach similar) to surfacesdisease or other cells. 1.3 The Classical Golden Age of Microbiology 6. Flagella provide motility. Our planet has always been in the “Age of Bacteria,” ever since the first 6. (1854-1914) 7. A glycocalyx protects against desiccation, fossils—bacteria of course—were entombed in rocks more than 3 billion 7. • The germ theory was based on the attaches cells to surfaces, and helps observations that different microorganisms years ago. On any possible, reasonable criterion, bacteria are—and always pathogens evade the immune system. have been—the dominant forms of life on Earth.