Algae and Lakes Algae Are Primitive, Usually Microscopic, Organisms Found in Every Lake
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A New Type of Plankton Food Web Functioning in Coastal Waters Revealed by Coupling Monte Carlo Markov Chain Linear Inverse Metho
A new type of plankton food web functioning in coastal waters revealed by coupling Monte Carlo Markov Chain Linear Inverse method and Ecological Network Analysis Marouan Meddeb, Nathalie Niquil, Boutheina Grami, Kaouther Mejri, Matilda Haraldsson, Aurélie Chaalali, Olivier Pringault, Asma Sakka Hlaili To cite this version: Marouan Meddeb, Nathalie Niquil, Boutheina Grami, Kaouther Mejri, Matilda Haraldsson, et al.. A new type of plankton food web functioning in coastal waters revealed by coupling Monte Carlo Markov Chain Linear Inverse method and Ecological Network Analysis. Ecological Indicators, Elsevier, 2019, 104, pp.67-85. 10.1016/j.ecolind.2019.04.077. hal-02146355 HAL Id: hal-02146355 https://hal.archives-ouvertes.fr/hal-02146355 Submitted on 3 Jun 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. 1 A new type of plankton food web functioning in coastal waters revealed by coupling 2 Monte Carlo Markov Chain Linear Inverse method and Ecological Network Analysis 3 4 5 Marouan Meddeba,b*, Nathalie Niquilc, Boutheïna Gramia,d, Kaouther Mejria,b, Matilda 6 Haraldssonc, Aurélie Chaalalic,e,f, Olivier Pringaultg, Asma Sakka Hlailia,b 7 8 aUniversité de Carthage, Faculté des Sciences de Bizerte, Laboratoire de phytoplanctonologie 9 7021 Zarzouna, Bizerte, Tunisie. -
Crustacean Zooplankton in Lake Constance from 1920 to 1995: Response to Eutrophication and Re-Oligotrophication
Arch. Hydrobiol. Spec. Issues Advanc. Limnol. 53, p. 255-274, December 1998 Lake Constance, Characterization of an ecosystem in transition Crustacean zooplankton in Lake Constance from 1920 to 1995: Response to eutrophication and re-oligotrophication Dietmar Straile and Waiter Geller with 9 figures Abstract: During the first three quarters ofthis century, the trophic state ofLake Constance changed from oligotrophic to meso-/eutrophic conditions. The response ofcrustaceans to the eutrophication process is studied by comparing biomasses ofcrustacean zooplankton from recent years, i.e. from 1979-1995, with data from the early 1920s (AUERBACH et a1. 1924, 1926) and the 1950s (MUCKLE & MUCKLE ROTTENGATTER 1976). This comparison revealed a several-fold increase in crustacean biomass. The relative biomass increase was more pronounced from the early 1920s to the 1950s than from the 1950s to the 1980s. Most important changes ofthe species inventory included the invasion of Cyclops vicinus and Daphnia galeata and the extinction of Heterocope borealis and Diaphanosoma brachyurum during the 1950s and early 1960s. All species which did not become extinct increased their biomass during eutrophication. This increase in biomass differed between species and throughout the season which re sulted in changes in relative biomass between species. Daphnids were able to enlarge their seasonal window ofrelative dominance from 3 months during the 1920s (June to August) to 7 months during the 1980s (May to November). On an annual average, this resulted in a shift from a copepod dominated lake (biomass ratio cladocerans/copepods = 0.4 during 1920/24) to a cladoceran dominated lake (biomass ratio cladocerans/copepods = 1.5 during 1979/95). -
Biology and Systematics of Heterokont and Haptophyte Algae1
American Journal of Botany 91(10): 1508±1522. 2004. BIOLOGY AND SYSTEMATICS OF HETEROKONT AND HAPTOPHYTE ALGAE1 ROBERT A. ANDERSEN Bigelow Laboratory for Ocean Sciences, P.O. Box 475, West Boothbay Harbor, Maine 04575 USA In this paper, I review what is currently known of phylogenetic relationships of heterokont and haptophyte algae. Heterokont algae are a monophyletic group that is classi®ed into 17 classes and represents a diverse group of marine, freshwater, and terrestrial algae. Classes are distinguished by morphology, chloroplast pigments, ultrastructural features, and gene sequence data. Electron microscopy and molecular biology have contributed signi®cantly to our understanding of their evolutionary relationships, but even today class relationships are poorly understood. Haptophyte algae are a second monophyletic group that consists of two classes of predominately marine phytoplankton. The closest relatives of the haptophytes are currently unknown, but recent evidence indicates they may be part of a large assemblage (chromalveolates) that includes heterokont algae and other stramenopiles, alveolates, and cryptophytes. Heter- okont and haptophyte algae are important primary producers in aquatic habitats, and they are probably the primary carbon source for petroleum products (crude oil, natural gas). Key words: chromalveolate; chromist; chromophyte; ¯agella; phylogeny; stramenopile; tree of life. Heterokont algae are a monophyletic group that includes all (Phaeophyceae) by Linnaeus (1753), and shortly thereafter, photosynthetic organisms with tripartite tubular hairs on the microscopic chrysophytes (currently 5 Oikomonas, Anthophy- mature ¯agellum (discussed later; also see Wetherbee et al., sa) were described by MuÈller (1773, 1786). The history of 1988, for de®nitions of mature and immature ¯agella), as well heterokont algae was recently discussed in detail (Andersen, as some nonphotosynthetic relatives and some that have sec- 2004), and four distinct periods were identi®ed. -
Fertilizing the Ocean with Iron Is This a Viable Way to Help Reduce Carbon Dioxide Levels in the Atmosphere?
380 Fertilizing the Ocean with Iron Is this a viable way to help reduce carbon dioxide levels in the atmosphere? 360 ive me half a tanker of iron, and I’ll give you an ice Twenty years on, Martin’s line is still viewed alternately age” may rank as the catchiest line ever uttered by a as a boast or a quip—an opportunity too good to pass up or a biogeochemist.“G The man responsible was the late John Martin, misguided remedy doomed to backfire. Yet over the same pe- former director of the Moss Landing Marine Laboratory, who riod, unrelenting increases in carbon emissions and mount- discovered that sprinkling iron dust in the right ocean waters ing evidence of climate change have taken the debate beyond could trigger plankton blooms the size of a small city. In turn, academic circles and into the free market. the billions of cells produced might absorb enough heat-trap- Today, policymakers, investors, economists, environ- ping carbon dioxide to cool the Earth’s warming atmosphere. mentalists, and lawyers are taking notice of the idea. A few Never mind that Martin companies are planning new, was only half serious when larger experiments. The ab- 340 he made the remark (in his Ocean Iron Fertilization sence of clear regulations for “best Dr. Strangelove accent,” either conducting experiments he later recalled) at an infor- An argument for: Faced with the huge at sea or trading the results mal seminar at Woods Hole consequences of climate change, iron’s in “carbon offset” markets Oceanographic Institution outsized ability to put carbon into the oceans complicates the picture. -
(7) Chrysophyta Golden-Brown Algae
PLANT GROUPS xanthophyta PLANT GROUPS (7) Chrysophyta Golden-brown Algae General characteristic of the Chrysophyta Habitat Aquatic mainly fresh water Pigments Chlorophyll (a & c), β-carotene & Fucoxanthin Food reserve Fat (Leucosin) Cell wall Cellulose, Hemicellulose often with siliceous scales Growth form Flagellate, Coccoid, Colonial rarely filamentous Flagella Two unequal in length & one of them has tripartite hairs Reproduction Asexual, Sexual Chrysophyta, or golden-brown algae, are common microscopic in fresh water. Some species are colorless, but the vast majority is photosynthetic. As such, they are particularly important in lakes, where they may be the primary source of food for zooplankton. They are not considered truly autotrophic by some biologists because nearly all chrysophyta become facultatively heterotrophic in the absence of adequate light, or in the presence of plentiful dissolved food. When this occurs, the chrysoplast atrophies and the alga may turn predator, feeding on bacteria or diatoms. 1 PLANT GROUPS xanthophyta Division Chrysophyta Class Chrysophyceae Order Ochromonadales Family Ochromonadaceae Genus Ochromonas Ochromonas single-celled naked with two unequal flagella cells spherical cylindrical to pyriform. Cells with 1-2 (rarely more) chloroplasts, with or without an eyespot and/or Pyrenoid chloroplasts sometimes much reduced and pale or completely lost after abnormal division. 2 PLANT GROUPS xanthophyta Division Chrysophyta Class Chrysophyceae Family Synuraceae Genus Mallomonas Mallomonas Single-cell, flagellates, -
Biological Oceanography - Legendre, Louis and Rassoulzadegan, Fereidoun
OCEANOGRAPHY – Vol.II - Biological Oceanography - Legendre, Louis and Rassoulzadegan, Fereidoun BIOLOGICAL OCEANOGRAPHY Legendre, Louis and Rassoulzadegan, Fereidoun Laboratoire d'Océanographie de Villefranche, France. Keywords: Algae, allochthonous nutrient, aphotic zone, autochthonous nutrient, Auxotrophs, bacteria, bacterioplankton, benthos, carbon dioxide, carnivory, chelator, chemoautotrophs, ciliates, coastal eutrophication, coccolithophores, convection, crustaceans, cyanobacteria, detritus, diatoms, dinoflagellates, disphotic zone, dissolved organic carbon (DOC), dissolved organic matter (DOM), ecosystem, eukaryotes, euphotic zone, eutrophic, excretion, exoenzymes, exudation, fecal pellet, femtoplankton, fish, fish lavae, flagellates, food web, foraminifers, fungi, harmful algal blooms (HABs), herbivorous food web, herbivory, heterotrophs, holoplankton, ichthyoplankton, irradiance, labile, large planktonic microphages, lysis, macroplankton, marine snow, megaplankton, meroplankton, mesoplankton, metazoan, metazooplankton, microbial food web, microbial loop, microheterotrophs, microplankton, mixotrophs, mollusks, multivorous food web, mutualism, mycoplankton, nanoplankton, nekton, net community production (NCP), neuston, new production, nutrient limitation, nutrient (macro-, micro-, inorganic, organic), oligotrophic, omnivory, osmotrophs, particulate organic carbon (POC), particulate organic matter (POM), pelagic, phagocytosis, phagotrophs, photoautotorphs, photosynthesis, phytoplankton, phytoplankton bloom, picoplankton, plankton, -
CH28 PROTISTS.Pptx
9/29/14 Biosc 41 Announcements 9/29 Review: History of Life v Quick review followed by lecture quiz (history & v How long ago is Earth thought to have formed? phylogeny) v What is thought to have been the first genetic material? v Lecture: Protists v Are we tetrapods? v Lab: Protozoa (animal-like protists) v Most atmospheric oxygen comes from photosynthesis v Lab exam 1 is Wed! (does not cover today’s lab) § Since many of the first organisms were photosynthetic (i.e. cyanobacteria), a LOT of excess oxygen accumulated (O2 revolution) § Some organisms adapted to use it (aerobic respiration) Review: History of Life Review: Phylogeny v Which organelles are thought to have originated as v Homology is similarity due to shared ancestry endosymbionts? v Analogy is similarity due to convergent evolution v During what event did fossils resembling modern taxa suddenly appear en masse? v A valid clade is monophyletic, meaning it consists of the ancestor taxon and all its descendants v How many mass extinctions seem to have occurred during v A paraphyletic grouping consists of an ancestral species and Earth’s history? Describe one? some, but not all, of the descendants v When is adaptive radiation likely to occur? v A polyphyletic grouping includes distantly related species but does not include their most recent common ancestor v Maximum parsimony assumes the tree requiring the fewest evolutionary events is most likely Quiz 3 (History and Phylogeny) BIOSC 041 1. How long ago is Earth thought to have formed? 2. Why might many organisms have evolved to use aerobic respiration? PROTISTS! Reference: Chapter 28 3. -
The Origin of Alternation of Generations in Land Plants
Theoriginof alternation of generations inlandplants: afocuson matrotrophy andhexose transport Linda K.E.Graham and LeeW .Wilcox Department of Botany,University of Wisconsin, 430Lincoln Drive, Madison,WI 53706, USA (lkgraham@facsta¡.wisc .edu ) Alifehistory involving alternation of two developmentally associated, multicellular generations (sporophyteand gametophyte) is anautapomorphy of embryophytes (bryophytes + vascularplants) . Microfossil dataindicate that Mid ^Late Ordovicianland plants possessed such alifecycle, and that the originof alternationof generationspreceded this date.Molecular phylogenetic data unambiguously relate charophyceangreen algae to the ancestryof monophyletic embryophytes, and identify bryophytes as early-divergentland plants. Comparison of reproduction in charophyceans and bryophytes suggests that the followingstages occurredduring evolutionary origin of embryophytic alternation of generations: (i) originof oogamy;(ii) retention ofeggsand zygotes on the parentalthallus; (iii) originof matrotrophy (regulatedtransfer ofnutritional and morphogenetic solutes fromparental cells tothe nextgeneration); (iv)origin of a multicellularsporophyte generation ;and(v) origin of non-£ agellate, walled spores. Oogamy,egg/zygoteretention andmatrotrophy characterize at least some moderncharophyceans, and arepostulated to represent pre-adaptativefeatures inherited byembryophytes from ancestral charophyceans.Matrotrophy is hypothesizedto have preceded originof the multicellularsporophytes of plants,and to represent acritical innovation.Molecular -
Ectocarpus: an Evo‑Devo Model for the Brown Algae Susana M
Coelho et al. EvoDevo (2020) 11:19 https://doi.org/10.1186/s13227-020-00164-9 EvoDevo REVIEW Open Access Ectocarpus: an evo-devo model for the brown algae Susana M. Coelho1* , Akira F. Peters2, Dieter Müller3 and J. Mark Cock1 Abstract Ectocarpus is a genus of flamentous, marine brown algae. Brown algae belong to the stramenopiles, a large super- group of organisms that are only distantly related to animals, land plants and fungi. Brown algae are also one of only a small number of eukaryotic lineages that have evolved complex multicellularity. For many years, little information was available concerning the molecular mechanisms underlying multicellular development in the brown algae, but this situation has changed with the emergence of Ectocarpus as a model brown alga. Here we summarise some of the main questions that are being addressed and areas of study using Ectocarpus as a model organism and discuss how the genomic information, genetic tools and molecular approaches available for this organism are being employed to explore developmental questions in an evolutionary context. Keywords: Ectocarpus, Life-cycle, Sex determination, Gametophyte, Sporophyte, Brown algae, Marine, Complex multicellularity, Phaeoviruses Natural habitat and life cycle Ectocarpus is a cosmopolitan genus, occurring world- Ectocarpus is a genus of small, flamentous, multicellu- wide in temperate and subtropical regions, and has been lar, marine brown algae within the order Ectocarpales. collected on all continents except Antarctica [1]. It is pre- Brown algae belong to the stramenopiles (or Heter- sent mainly on rocky shores where it grows on abiotic okonta) (Fig. 1a), a large eukaryotic supergroup that (rocks, pebbles, dead shells) and biotic (other algae, sea- is only distantly related to animals, plants and fungi. -
Cephaleuros Species, the Plant-Parasitic Green Algae
Plant Disease Aug. 2008 PD-43 Cephaleuros Species, the Plant-Parasitic Green Algae Scot C. Nelson Department of Plant and Environmental Protection Sciences ephaleuros species are filamentous green algae For information on other Cephaleuros species and and parasites of higher plants. In Hawai‘i, at least their diseases in our region, please refer to the technical twoC of horticultural importance are known: Cephaleu- report by Fred Brooks (in References). To see images of ros virescens and Cephaleuros parasiticus. Typically Cephaleuros minimus on noni in American Samoa, visit harmless, generally causing minor diseases character- the Hawai‘i Pest and Disease Image Gallery (www.ctahr. ized by negligible leaf spots, on certain crops in moist hawaii.edu/nelsons/Misc), and click on “noni.” environments these algal diseases can cause economic injury to plant leaves, fruits, and stems. C. virescens is The pathogen the most frequently reported algal pathogen of higher The disease is called algal leaf spot, algal fruit spot, and plants worldwide and has the broadest host range among green scurf; Cephaleuros infections on tea and coffee Cephaleuros species. Frequent rains and warm weather plants have been called “red rust.” These are aerophilic, are favorable conditions for these pathogens. For hosts, filamentous green algae. Although aerophilic and ter- poor plant nutrition, poor soil drainage, and stagnant air restrial, they require a film of water to complete their are predisposing factors to infection by the algae. life cycles. The genus Cephaleuros is a member of the Symptoms and crop damage can vary greatly depend- Trentepohliales and a unique order, Chlorophyta, which ing on the combination of Cephaleuros species, hosts and contains the photosynthetic organisms known as green environments. -
Photosynthesis... Using Algae Wrapped in Jelly Balls
Student Sheet 23 www.saps.org.uk Photosynthesis... using algae wrapped in jelly balls Algae can be considered as one-celled plants, and they usually live in water. You are going to use algae to look at the rate of photosynthesis. The algae are tiny and are difficult to work with directly in the water so the first part of the practical involves ‘immobilising’ the algae. This effectively traps large numbers of algal cells in ‘jelly like’ balls so that we can keep them in one place and not lose them. We use sodium alginate to help make the jelly. Sodium alginate is not harmful to the algae. When these algae are ‘wrapped up’ in the jelly balls they are excellent to use in experiments on photosynthesis. These algal balls are: • cheap to grow and easy to make – you will be able to make hundreds in a very short time • easy to get a standard quantity of plant material because each of the balls is approximately the same volume • easy to keep alive for several weeks so you can keep them for future experiments 1. First you need to obtain a 2. Now you have millions of algal 3. Finally we’re going to make the concentrated suspension of algae. cells in a small volume of liquid. balls… Do this by removing some of the It’s time to mix them into your liquid medium in which they are ‘jelly’. Pour the green mixture through growing in one of two ways. an open-ended syringe into a 2% Pour about 2.5cm3 of jelly (sodium solution of calcium chloride. -
23.3 Groups of Protists
Chapter 23 | Protists 639 cysts that are a protective, resting stage. Depending on habitat of the species, the cysts may be particularly resistant to temperature extremes, desiccation, or low pH. This strategy allows certain protists to “wait out” stressors until their environment becomes more favorable for survival or until they are carried (such as by wind, water, or transport on a larger organism) to a different environment, because cysts exhibit virtually no cellular metabolism. Protist life cycles range from simple to extremely elaborate. Certain parasitic protists have complicated life cycles and must infect different host species at different developmental stages to complete their life cycle. Some protists are unicellular in the haploid form and multicellular in the diploid form, a strategy employed by animals. Other protists have multicellular stages in both haploid and diploid forms, a strategy called alternation of generations, analogous to that used by plants. Habitats Nearly all protists exist in some type of aquatic environment, including freshwater and marine environments, damp soil, and even snow. Several protist species are parasites that infect animals or plants. A few protist species live on dead organisms or their wastes, and contribute to their decay. 23.3 | Groups of Protists By the end of this section, you will be able to do the following: • Describe representative protist organisms from each of the six presently recognized supergroups of eukaryotes • Identify the evolutionary relationships of plants, animals, and fungi within the six presently recognized supergroups of eukaryotes • Identify defining features of protists in each of the six supergroups of eukaryotes. In the span of several decades, the Kingdom Protista has been disassembled because sequence analyses have revealed new genetic (and therefore evolutionary) relationships among these eukaryotes.