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University of Southampton Research Repository ePrints Soton Copyright © and Moral Rights for this thesis are retained by the author and/or other copyright owners. A copy can be downloaded for personal non-commercial research or study, without prior permission or charge. This thesis cannot be reproduced or quoted extensively from without first obtaining permission in writing from the copyright holder/s. The content must not be changed in any way or sold commercially in any format or medium without the formal permission of the copyright holders. When referring to this work, full bibliographic details including the author, title, awarding institution and date of the thesis must be given e.g. AUTHOR (year of submission) "Full thesis title", University of Southampton, name of the University School or Department, PhD Thesis, pagination http://eprints.soton.ac.uk UNIVERSITY OF SOUTHAMPTON FACULTY OF MEDICINE, HEALTH AND LIFE SCIENCES School of Biological Sciences DECONTAMINATION OF PRIONS, PRION-ASSOCIATED AMYLOID AND INFECTIVITY FROM SURGICAL STAINLESS STEEL – IMPLICATIONS FOR THE RISK OF IATROGENIC TRANSMISSION OF CJD By ROBERT HOWLIN Thesis submitted for the degree of Doctor of Philosophy September 2009 ABSTRACT FACULTY OF MEDICINE, HEALTH AND LIFE SCIENCES SCHOOL OF BIOLOGICAL SCIENCES Doctor of Philosophy DECONTAMINATION OF PRIONS, PRION-ASSOCIATED AMYLOID AND INFECTIVITY FROM SURGICAL STAINLESS STEEL – IMPLICATIONS FOR THE RISK OF IATROGENIC TRANSMISSION OF CJD By Robert Howlin The physicochemical nature of the infectious agent in prion diseases creates a significant challenge for decontamination services. It has been shown to be both resistant to standard methods of decontamination, used to inactivate viruses and bacteria, and to associate avidly with surgical stainless steel. Moreover, the pathophysiology of the variant, iatrogenic and sporadic forms of Creutzfeldt-Jakob Disease (CJD) suggests deposition of the infectious agent across a wide range of extraneural, lymphoid tissues, as well as in the skeletal muscle and blood. Coupled with the potential for asymptomatic carriers, there is a significant risk of iatrogenic transmission of CJD through both neurosurgical procedures and standard surgery. This PhD study was undertaken in order to improve methods of instrument decontamination and to evaluate prion detection techniques and their applicability for the assessment of prion inactivation and removal. The project has provided relevant, critical assessment of hospital decontamination procedures, in addition to guidance on how working protocols should be improved to provide a cleaner and safer end product for the patient. Moreover, laboratory studies have been performed to evaluate current methods of prion decontamination in the context of hospital procedures for instrument reprocessing. Challenges faced by sterile service departments, such as soil drying and surface degradation, have been addressed and their impact on the risk of iatrogenic transmission of prions has been investigated. Critically, the use of a fluorescent amyloid fluorophore for the detection of prion- associated amyloid as a marker for disease permitted the investigation of the role of amyloid in infectious disease under denaturing conditions. Correlation of this detection technique with the identification of PrP res by Western blot and infectious disease suggested that, whilst fluorescent detection of prion-associated amyloid was more sensitive than Western blot, PrP res detection was more specific relative to infectivity. Improved fluorophores, with greater sensitivity, have been evaluated which will enhance in situ detection of prions in the future. ii LIST OF CONTENTS SECTION TITLE PAGE TITLE PAGE……………………………………………………………………………..……i ABSTRACT……………………………………………………………………………………ii LIST OF CONTENTS…………………………………………………………………..…....iii LIST OF FIGURES AND TABLES…....…………………………………...……………. viii AUTHOR DECLARATION………………………………………………………………..xiii ACKNOWLEDGEMENTS………………………………………………………………...xiv PUBLICATIONS…………………………………………………………………………….xv LIST OF ABBREVIATIONS………………………...…………………………………….xvi CHAPTER 1 – INTRODUCTION TO PRIONS DISEASES……………………………....1 1.1. Introduction………………………………………………………………...2 1.2. The Prionopathies and their Epidemiology…………………………........2 1.3. PRNP and the Cellular Prion Protein…………………………………...10 1.3.1. The Normal Physiological Function(s) of PrP c…………………………….14 1.4. The Pathological Prion Protein…………………………………………..18 1.4.1. The Site of PrP res Conversion………………………………………………19 1.4.2. Important Molecular Structures in the Conversion of PrP c to PrP res ……….20 1.4.3. Evidence for an Auxiliary Factor in Prion Conversion…………………….23 1.4.4. Mechanism(s) of PrP res misfolding………………………………………...24 1.4.5. Aggregation, Fragmentation and Replication of PrP res …………………….26 1.5. The Infectious Agent…………...………………………………………....29 1.6. Prion Disease Pathogenesis………………………………………………32 1.6.1. Infection and Peripheral Replication……………………………………….33 1.6.2. Peripheral Migration and Neuroinvasion…………………………………..34 1.6.3. Neurodegeneration…………………………………………………………35 1.7. Factors Influencing Prion Disease Transmission……………………….37 1.7.1. Prion Strains………………………………………………………………..37 1.7.2. The Species Barrier………………………………………………………...39 1.7.3. Genetic Susceptibility……………………………………………………...40 iii 1.7.3.1. Asymptomatic carriers……………………………………………………………42 1.8. Iatrogenic Creutzfeldt-Jakob Disease…………………………………...43 1.9. Decontamination of Surgical Instruments………………………………45 1.10. Project Aims and Rationale……………………………………………....47 CHAPTER 2 – MATERIALS AND METHODS………………………………………..…49 2.1. Animals…………………………………………………………………….50 2.2. Strains and Preparation of brain tissue…………………………………50 2.2.1. ME7 Scrapie-infected Brain Homogenate…………………………………50 2.2.2. 263K Scrapie-infected Brain Homogenate………………………………...51 2.2.3. Preparation of Brain Sections………………………………………………51 2.3. Contamination of Test Surfaces………………………………………….52 2.3.1. Standard Stainless Steel Wires……………………………………………..52 2.3.2. Artificial Degraded Stainless Steel Wires………………………………….52 2.3.2.1. Conformation of wires surface tomography……………………………………52 2.3.3. Stainless Steel Tokens……………………………………………………...53 2.3.3.1. Contamination of stainless steel tokens by handling……………………….…53 2.4. Surface Decontamination Techniques…………………………………...53 2.4.1. Decontamination of Wires Using A High Temperature and Pressure Autoclave Treatment……………………………………………………….53 2.4.2. Decontamination Using Simulated Washer-Disinfector Cycles…………...54 2.4.3. Decontamination of Artificially Degraded Wires………………………….55 2.4.4. Decontamination of Wires: Methodology Correlation Study……………...56 2.5. Staining Techniques………………………………………………………56 2.5.1. General Protein Stain………………………………………………………57 2.5.2. Prion Amyloid Stain……………………………………………………….57 2.5.3. Thioflavin T/SYPRO Ruby Dual Staining Technique…………………….57 2.5.4. 2-(4’-Methylaminophenyl)Benzothiazol (BTA-1) Stain for Prion Amyloid……………………………………………………………...58 2.6. Analysis of Thiazole Analogues………………………………………….58 2.6.1. Assessment of Analogue Staining Efficiency……………………………...59 iv 2.6.2. Analysis of 2-(4’-Dimethylaminophenyl)-6-Methyloxybenzothiazole (28d) binding specificity………………………………..………………….59 2.6.3. Analysis of the Rate of Photobleaching of 2-(4’-Dimethylamino- phenyl)-6-Methyloxybenzothiazole (28d) relative to BTA-1…………...…60 2.6.4. Correlation of 2-(4’-Dimethylaminophenyl)-6-Methyloxybenzothiazole (28d) and BTA-1 Fluorescence with the Monoclonal Anti-PrP Antibody 6H4………………………………………………………………60 2.7. Episcopic Differential Interference Contrast Microscopy Coupled with Epi-Fluorescence (EDIC/EF)………………..….………..61 2.7.1. Epi-Fluorescence Filter Blocks…………………………………………….63 2.7.2. Statistical Analysis…………………………………………………………64 2.8. Western Blot………………………………..……………………………..64 2.8.1. Preparation of Samples – Suspension Studies……………………………..64 2.8.1.1. Exposure parameters intended for the preparation of homogenate samples for the antibody mapping of PrP res …….……………………………..64 2.8.2. Preparation of Samples – Surface Studies…………………………………65 2.8.3. Western Blot Protocol……………………………………………………...65 2.9. Animal Bioassay Studies………………………………………………….68 2.10. Hospital Sterile Service Department (SSD) Studies…………………….68 2.10.1. An Assessment of the Effectiveness of a Validated Washer- Disinfector Cleaning Cycle…………………………….…………………..68 2.10.2. An Assessment of the Acquisition of Proteinaceous Contamination Through Handling by SSD Staff in the Clean Room………………..……..69 CHAPTER 3 – ASPECTS OF THE DECONTAMINATION OF SURGICAL INSTRUMENTS IN HOSPITAL STERILE SERVICE DEPARTMENTS……………..72 3.1. Introduction……………………………………………………………….73 3.2. Materials and Methods…………………………………………………...74 3.3. Results…………………………………………………………………..…75 3.3.1. Evaluation of a Washer-Disinfector Cycle………………………………...75 3.3.2. Protein Contamination of Stainless Steel by Hand………………………...78 3.3.3. Protein Contamination of Surgical Instruments by Hand………………….79 v 3.3.4. The Effect of Autoclave Treatment on Protein Attachment to Stainless Steel……………………………………………………………....81 3.4. Discussion………………………………………………………………….82 CHAPTER 4 – DECONTAMINATION OF TISSUE PROTEIN AND PRION AMYLOID FROM SURGICAL STAINLESS STEEL DURING SIMULATED WASHER-DISINFECTOR CYCLES……………………………………………………...86 4.1. Introduction……………………………………………………………….87 4.2. Materials and Methods…………………………………………………...88 4.3. Results……………………………………………………………………..88 4.4. Discussion………………………………………………………………….94 CHAPTER 5 – THE EFFECT OF SURFACE DEGRADATION ON THE EFFICIENCY OF PRION DECONTAMINATION………………………………..……..98 5.1. Introduction………………………………………………………...……..99