Lecture 3 Basidiomycota Life Cycle
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Genome Sequence Analysis of Auricularia Heimuer Combined with Genetic Linkage Map
Journal of Fungi Article Genome Sequence Analysis of Auricularia heimuer Combined with Genetic Linkage Map Ming Fang 1, Xiaoe Wang 2, Ying Chen 2, Peng Wang 2, Lixin Lu 2, Jia Lu 2, Fangjie Yao 1,2,* and Youmin Zhang 1,* 1 Lab of genetic breeding of edible mushromm, Horticultural, College of Horticulture, Jilin Agricultural University, Changchun 130118, China; [email protected] 2 Engineering Research Centre of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun 130118, China; [email protected] (X.W.); [email protected] (Y.C.); [email protected] (P.W.); [email protected] (L.L.); [email protected] (J.L.) * Correspondence: [email protected] (F.Y.); [email protected] (Y.Z.) Received: 3 March 2020; Accepted: 12 March 2020; Published: 16 March 2020 Abstract: Auricularia heimuer is one of the most popular edible fungi in China. In this study, the whole genome of A. heimuer was sequenced on the Illumina HiSeq X system and compared with other mushrooms genomes. As a wood-rotting fungus, a total of 509 carbohydrate-active enzymes (CAZymes) were annotated in order to explore its potential capabilities on wood degradation. The glycoside hydrolases (GH) family genes in the A. heimuer genome were more abundant than the genes in the other 11 mushrooms genomes. The A. heimuer genome contained 102 genes encoding class III, IV, and V ethanol dehydrogenases. Evolutionary analysis based on 562 orthologous single-copy genes from 15 mushrooms showed that Auricularia formed an early independent branch of Agaricomycetes. The mating-type locus of A. heimuer was located on linkage group 8 by genetic linkage analysis. -
Studies on Ear Fungus-Auricularia from the Woodland of Nameri National Park, Sonitpur District, Assam
International Journal of Interdisciplinary and Multidisciplinary Studies (IJIMS), 2014, Vol 1, No.5, 262-265. 262 Available online at http://www.ijims.com ISSN: 2348 – 0343 Studies on Ear Fungus-Auricularia from the Woodland of Nameri National Park, Sonitpur District, Assam. M.P. Choudhury1*, Dr.T.C Sarma2 1.Department of Botany, Nowgong College, Nagaon -782001, Assam, India. 2.Department of Botany, Gauhati University,Guwahati-7810 14, Assam, India. *Corresponding author: M.P. Choudhury Abstract Auricularia is the genus of the order Auriculariales with more than 10 species. It is also called ear fungus due to its morphological similarities with human ear and has considerable mythological importance. Auricularia auricula is the type species of the order Auriculariales. Different species of Auricularia are edible and some have medicinal importance and still investigations are going on other species to find out their medicinal properties. Extensive woodland of Nameri National Park provides ideal condition for the growth of different species of Auricularia. In this context the present study has been undertaken to study the taxonomy and diversity of different species of Auricularia and bring together information of its ethenomycological uses. As a result of field and laboratory study four different species of Auricularia were collected of which 3 species were identified and one species remain unidentified. Key Words: Auricularia, Taxonomy, Diversity, Nameri National Park. Introduction Auricularia belongs to the order Auriculariales is the largest genus of jelly fungi. They are among the most common and widely distributed members of macrofungi, which generally occurs as saprophytes on wood, logs, branch and twigs causing severe degrees of white rotting of forest trees. -
Exobasidium Darwinii, a New Hawaiian Species Infecting Endemic Vaccinium Reticulatum in Haleakala National Park
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Springer - Publisher Connector Mycol Progress (2012) 11:361–371 DOI 10.1007/s11557-011-0751-4 ORIGINAL ARTICLE Exobasidium darwinii, a new Hawaiian species infecting endemic Vaccinium reticulatum in Haleakala National Park Marcin Piątek & Matthias Lutz & Patti Welton Received: 4 November 2010 /Revised: 26 February 2011 /Accepted: 2 March 2011 /Published online: 8 April 2011 # The Author(s) 2011. This article is published with open access at Springerlink.com Abstract Hawaii is one of the most isolated archipelagos Exobasidium darwinii is proposed for this novel taxon. This in the world, situated about 4,000 km from the nearest species is characterized among others by the production of continent, and never connected with continental land peculiar witches’ brooms with bright red leaves on the masses. Two Hawaiian endemic blueberries, Vaccinium infected branches of Vaccinium reticulatum. Relevant char- calycinum and V. reticulatum, are infected by Exobasidium acters of Exobasidium darwinii are described and illustrated, species previously recognized as Exobasidium vaccinii. additionally phylogenetic relationships of the new species are However, because of the high host-specificity of Exobasidium, discussed. it seems unlikely that the species infecting Vaccinium calycinum and V. reticulatum belongs to Exobasidium Keywords Exobasidiomycetes . ITS . LSU . vaccinii, which in the current circumscription is restricted to Molecular phylogeny. Ustilaginomycotina -
Methods and Work Profile
REVIEW OF THE KNOWN AND POTENTIAL BIODIVERSITY IMPACTS OF PHYTOPHTHORA AND THE LIKELY IMPACT ON ECOSYSTEM SERVICES JANUARY 2011 Simon Conyers Kate Somerwill Carmel Ramwell John Hughes Ruth Laybourn Naomi Jones Food and Environment Research Agency Sand Hutton, York, YO41 1LZ 2 CONTENTS Executive Summary .......................................................................................................................... 8 1. Introduction ............................................................................................................ 13 1.1 Background ........................................................................................................................ 13 1.2 Objectives .......................................................................................................................... 15 2. Review of the potential impacts on species of higher trophic groups .................... 16 2.1 Introduction ........................................................................................................................ 16 2.2 Methods ............................................................................................................................. 16 2.3 Results ............................................................................................................................... 17 2.4 Discussion .......................................................................................................................... 44 3. Review of the potential impacts on ecosystem services ....................................... -
Molecular Evolution and Functional Divergence of Tubulin Superfamily In
OPEN Molecular evolution and functional SUBJECT AREAS: divergence of tubulin superfamily in the FUNGAL GENOMICS MOLECULAR EVOLUTION fungal tree of life FUNGAL BIOLOGY Zhongtao Zhao1*, Huiquan Liu1*, Yongping Luo1, Shanyue Zhou2, Lin An1, Chenfang Wang1, Qiaojun Jin1, Mingguo Zhou3 & Jin-Rong Xu1,2 Received 18 July 2014 1 NWAFU-PU Joint Research Center, State Key Laboratory of Crop Stress Biology for Arid Areas, College of Plant Protection, 2 Accepted Northwest A&F University, Yangling, Shaanxi 712100, China, Department of Botany and Plant Pathology, Purdue University, West 3 22 September 2014 Lafayette, IN 47907, USA, College of Plant Protection, Nanjing Agricultural University, Key Laboratory of Integrated Management of Crop Diseases and Pests, Ministry of Education, Key Laboratory of Pesticide, Nanjing, Jiangsu 210095, China. Published 23 October 2014 Microtubules are essential for various cellular activities and b-tubulins are the target of benzimidazole fungicides. However, the evolution and molecular mechanisms driving functional diversification in fungal tubulins are not clear. In this study, we systematically identified tubulin genes from 59 representative fungi Correspondence and across the fungal kingdom. Phylogenetic analysis showed that a-/b-tubulin genes underwent multiple requests for materials independent duplications and losses in different fungal lineages and formed distinct paralogous/ should be addressed to orthologous clades. The last common ancestor of basidiomycetes and ascomycetes likely possessed two a a a b b b a J.-R.X. (jinrong@ paralogs of -tubulin ( 1/ 2) and -tubulin ( 1/ 2) genes but 2-tubulin genes were lost in basidiomycetes and b2-tubulin genes were lost in most ascomycetes. Molecular evolutionary analysis indicated that a1, a2, purdue.edu) and b2-tubulins have been under strong divergent selection and adaptive positive selection. -
Why Mushrooms Have Evolved to Be So Promiscuous: Insights from Evolutionary and Ecological Patterns
fungal biology reviews 29 (2015) 167e178 journal homepage: www.elsevier.com/locate/fbr Review Why mushrooms have evolved to be so promiscuous: Insights from evolutionary and ecological patterns Timothy Y. JAMES* Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109, USA article info abstract Article history: Agaricomycetes, the mushrooms, are considered to have a promiscuous mating system, Received 27 May 2015 because most populations have a large number of mating types. This diversity of mating Received in revised form types ensures a high outcrossing efficiency, the probability of encountering a compatible 17 October 2015 mate when mating at random, because nearly every homokaryotic genotype is compatible Accepted 23 October 2015 with every other. Here I summarize the data from mating type surveys and genetic analysis of mating type loci and ask what evolutionary and ecological factors have promoted pro- Keywords: miscuity. Outcrossing efficiency is equally high in both bipolar and tetrapolar species Genomic conflict with a median value of 0.967 in Agaricomycetes. The sessile nature of the homokaryotic Homeodomain mycelium coupled with frequent long distance dispersal could account for selection favor- Outbreeding potential ing a high outcrossing efficiency as opportunities for choosing mates may be minimal. Pheromone receptor Consistent with a role of mating type in mediating cytoplasmic-nuclear genomic conflict, Agaricomycetes have evolved away from a haploid yeast phase towards hyphal fusions that display reciprocal nuclear migration after mating rather than cytoplasmic fusion. Importantly, the evolution of this mating behavior is precisely timed with the onset of diversification of mating type alleles at the pheromone/receptor mating type loci that are known to control reciprocal nuclear migration during mating. -
Supplementary Table S2: New Taxonomic Assignment of Sequences of Basal Fungal Lineages
Supplementary Table S2: New taxonomic assignment of sequences of basal fungal lineages. Fungal sequences were subjected to BLAST-N analysis and checked for their taxonomic placement in the eukaryotic guide-tree of the SILVA release 111. Sequences were classified depending on combined results from the methods mentioned above as well as literature searches. Accession Name New classification Clustering of the sequence in the Best BLAST-N hit number based on combined results eukaryotic guide tree of SILVA Name Accession number E.value Identity AB191431 Uncultured fungus Chytridiomycota Chytridiomycota Basidiobolus haptosporus AF113413.1 0.0 91 AB191432 Unculltured eukaryote Blastocladiomycota Blastocladiomycota Rhizophlyctis rosea NG_017175.1 0.0 91 AB252775 Uncultured eukaryote Chytridiomycota Chytridiomycota Blastocladiales sp. EF565163.1 0.0 91 AB252776 Uncultured eukaryote Fungi Nucletmycea_Fonticula Rhizophydium sp. AF164270.2 0.0 87 AB252777 Uncultured eukaryote Chytridiomycota Chytridiomycota Basidiobolus haptosporus AF113413.1 0.0 91 AB275063 Uncultured fungus Chytridiomycota Chytridiomycota Catenomyces sp. AY635830.1 0.0 90 AB275064 Uncultured fungus Chytridiomycota Chytridiomycota Endogone lactiflua DQ536471.1 0.0 91 AB433328 Nuclearia thermophila Nuclearia Nucletmycea_Nuclearia Nuclearia thermophila AB433328.1 0.0 100 AB468592 Uncultured fungus Basal clone group I Chytridiomycota Physoderma dulichii DQ536472.1 0.0 90 AB468593 Uncultured fungus Basal clone group I Chytridiomycota Physoderma dulichii DQ536472.1 0.0 91 AB468594 Uncultured -
Aleurodiscus Bicornis and A. Formosanus Spp. Nov. (Basidiomycota) with Smooth Basidiospores, and Description of A
Aleurodiscus Bicornis and A. Formosanus Spp. Nov. (Basidiomycota) With Smooth Basidiospores, and Description of A. Parvisporus From NE China Sheng-Hua Wu ( [email protected] ) National Museum of Natural Science https://orcid.org/0000-0002-9873-5595 Chia-Ling Wei National Museum of Natural Science, ROC Chiung-Chih Chang Biodiversity Research Institute Research Article Keywords: China, corticioid fungi, Taiwan, taxonomy, wood-decaying fungi Posted Date: March 22nd, 2021 DOI: https://doi.org/10.21203/rs.3.rs-306327/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/18 Abstract Three species of Aleurodiscus s.l. characterized in having effused basidiomata, clamped generative hyphae and quasi-binding hyphae, sulphuric positive reaction of gloeocystidia, hyphidia, acanthophyses and smooth basidiospores, are described. They are A. bicornis sp. nov., A. formosanus sp. nov. and A. parvisporus. Aleurodiscus bicornis was found from high mountains of NW Yunnan Province of SW China, grew on branch of Picea sp. Aleurodiscus formosanus was found from high mountains of central Taiwan, grew on branch of gymnosperm. Aleurodiscus parvisporus was previously reported only once from Japan and Sichuan Province of China respectively, and is reported in this study from Jilin Province of China. Phylogenetic relationships of these three species were inferred from analyses of a combined dataset consisting of three genetic markers, viz. 28S, nuc rDNA ITS1-5.8S-ITS2 (ITS), and a portion of the translation elongation factor 1-alpha gene, TEF1. The studied three species are phylogenetically closely related with signicant support, corresponds with resemblance of their morphological features. -
The Diversity of Basidiomycota Fungi That Have the Potential As a Source of Nutraceutical to Be Developed in the Concept of Integrated Forest Management Poisons
International Journal of Recent Technology and Engineering (IJRTE) ISSN: 2277-3878, Volume-8 Issue-2S, July 2019 The Diversity of Basidiomycota Fungi that Have the Potential as a Source of Nutraceutical to be Developed in the Concept of Integrated Forest Management Mustika Dewi, I Nyoman Pugeg Aryantha, Mamat Kandar straw mushrooms, oyster mushrooms, and shiitake Abstract: The fungus Basidiomycota found in Indonesia have mushrooms. very high diversity, but have not been explored so far. The development of local Basidiomycota mushrooms that Development of fungi Basidiomycota is an alternative as a are cultivated by utilizing space on the forest floor has not source of natural nutraceuticals, especially beta glucan and been done mostly in Indonesia. In several countries such as lovastatin compounds. This compound can be used in the pharmaceutical and food fields. This study aims to obtain Japan, people have long been cultivating shitake mushrooms Basidiomycota fungi isolates that have the potential as a by utilizing forest floors. Reported by (Savoie & Largeteau, nutraceutical source. As the first stage in this research, the 2011) that mushrooms from the Basidiomycota group are activities carried out were exploration, isolation on culture widely produced in forest areas through the utilization of media, and identification of fungi based on genotypic forest floors as a place to grow these fungi which have characters. The results showed that the fungi identified based on economic value quite high by applying the concept of their genotypic characters were Pleurotusostreatus, Ganodermacf, Resinaceum, Lentinulaedodes, micosilviculture. The concept of micosilviculture is a Vanderbyliafraxinea, Auricularia delicate, Pleurotusgiganteus, concept that is applied in the management of integrated Auricularia sp. -
Fungal Planet Description Sheets: 716–784 By: P.W
Fungal Planet description sheets: 716–784 By: P.W. Crous, M.J. Wingfield, T.I. Burgess, G.E.St.J. Hardy, J. Gené, J. Guarro, I.G. Baseia, D. García, L.F.P. Gusmão, C.M. Souza-Motta, R. Thangavel, S. Adamčík, A. Barili, C.W. Barnes, J.D.P. Bezerra, J.J. Bordallo, J.F. Cano-Lira, R.J.V. de Oliveira, E. Ercole, V. Hubka, I. Iturrieta-González, A. Kubátová, M.P. Martín, P.-A. Moreau, A. Morte, M.E. Ordoñez, A. Rodríguez, A.M. Stchigel, A. Vizzini, J. Abdollahzadeh, V.P. Abreu, K. Adamčíková, G.M.R. Albuquerque, A.V. Alexandrova, E. Álvarez Duarte, C. Armstrong-Cho, S. Banniza, R.N. Barbosa, J.-M. Bellanger, J.L. Bezerra, T.S. Cabral, M. Caboň, E. Caicedo, T. Cantillo, A.J. Carnegie, L.T. Carmo, R.F. Castañeda-Ruiz, C.R. Clement, A. Čmoková, L.B. Conceição, R.H.S.F. Cruz, U. Damm, B.D.B. da Silva, G.A. da Silva, R.M.F. da Silva, A.L.C.M. de A. Santiago, L.F. de Oliveira, C.A.F. de Souza, F. Déniel, B. Dima, G. Dong, J. Edwards, C.R. Félix, J. Fournier, T.B. Gibertoni, K. Hosaka, T. Iturriaga, M. Jadan, J.-L. Jany, Ž. Jurjević, M. Kolařík, I. Kušan, M.F. Landell, T.R. Leite Cordeiro, D.X. Lima, M. Loizides, S. Luo, A.R. Machado, H. Madrid, O.M.C. Magalhães, P. Marinho, N. Matočec, A. Mešić, A.N. Miller, O.V. Morozova, R.P. Neves, K. Nonaka, A. Nováková, N.H. -
INTRODUCTION Biodiversity of Agaricomycetes Basidiomes
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by CONICET Digital DARWINIANA, nueva serie 1(1): 67-75. 2013 Versión final, efectivamente publicada el 31 de julio de 2013 ISSN 0011-6793 impresa - ISSN 1850-1699 en línea BIODIVERSITY OF AGARICOMYCETES BASIDIOMES ASSOCIATED TO SALIX AND POPULUS (SALICACEAE) PLANTATIONS Gonzalo M. Romano1, Javier A. Calcagno2 & Bernardo E. Lechner1 1Laboratorio de Micología, Fitopatología y Liquenología, Departamento de Biodiversidad y Biología Experimental, Programa de Plantas Medicinales y Programa de Hongos que Intervienen en la Degradación Biológica (CONICET), Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Intendente Güiraldes 2160, Pabellón II, Piso 4, Laboratorio 7, C1428EGA Ciudad Autónoma de Buenos Aires, Argentina; [email protected] (author for correspondence). 2Centro de Estudios Biomédicos, Biotecnológicos, Ambientales y de Diagnóstico - Departamento de Ciencias Natu- rales y Antropológicas, Instituto Superior de Investigaciones, Hidalgo 775, C1405BCK Ciudad Autónoma de Buenos Aires, Argentina. Abstract. Romano, G. M.; J. A. Calcagno & B. E. Lechner. 2013. Biodiversity of Agaricomycetes basidiomes asso- ciated to Salix and Populus (Salicaceae) plantations. Darwiniana, nueva serie 1(1): 67-75. Although plantations have an artificial origin, they modify environmental conditions that can alter native fungi diversity. The effects of forest management practices on a plantation of willow (Salix) and poplar (Populus) over Agaricomycetes basidiomes biodiversity were studied for one year in an island located in Paraná Delta, Argentina. Dry weight and number of basidiomes were measured. We found 28 species belonging to Agaricomycetes: 26 species of Agaricales, one species of Polyporales and one species of Russulales. -
Mitochondrial Evolution in the Entomopathogenic Fungal Genus Beauveria
Received: 29 September 2020 | Revised: 12 October 2020 | Accepted: 13 October 2020 DOI: 10.1002/arch.21754 RESEARCH ARTICLE Mitochondrial evolution in the entomopathogenic fungal genus Beauveria Travis Glare1 | Matt Campbell2 | Patrick Biggs2 | David Winter2 | Abigail Durrant1 | Aimee McKinnon1 | Murray Cox2 1Bio‐Protection Research Centre, Lincoln University, Lincoln, New Zealand Abstract 2 School of Fundamental Sciences, Massey Species in the fungal genus Beauveria are pathogens of University, Palmerston North, New Zealand invertebrates and have been commonly used as the ac- Correspondence tive agent in biopesticides. After many decades with few Glare Travis, Bio‐Protection Research Centre, Lincoln University, PO Box 85084, Lincoln species described, recent molecular approaches to clas- 7647, New Zealand. sification have led to over 25 species now delimited. Email: [email protected] Little attention has been given to the mitochondrial genomes of Beauveria but better understanding may led to insights into the nature of species and evolution in this important genus. In this study, we sequenced the mi- tochondrial genomes of four new strains belonging to Beauveria bassiana, Beauveria caledonica and Beauveria malawiensis, and compared them to existing mitochon- drial sequences of related fungi. The mitochondrial gen- omes of Beauveria ranged widely from 28,806 to 44,135 base pairs, with intron insertions accounting for most size variation and up to 39% (B. malawiensis) of the mi- tochondrial length due to introns in genes. Gene order of the common mitochondrial genes did not vary among the Beauveria sequences, but variation was observed in the number of transfer ribonucleic acid genes. Although phylogenetic analysis using whole mitochondrial gen- omes showed, unsurprisingly, that B.