veterinary sciences Article Elucidating Transmission Patterns of Endemic Mycobacterium avium subsp. paratuberculosis Using Molecular Epidemiology Rebecca M. Mitchell 1,2,†, Annabelle Beaver 2,3,4,† , Elena Knupfer 2, Abani K. Pradhan 5 , Terry Fyock 6, Robert H. Whitlock 6 and Ynte H. Schukken 2,4,7,8,* 1 Emory University Department of Mathematics and Computer Science, 400 Dowman Drive, Atlanta, GA 30322, USA;
[email protected] 2 Department of Population Medicine and Diagnostic Sciences, Cornell University, 618 Tower Road, Ithaca, NY 14853, USA;
[email protected] (A.B.);
[email protected] (E.K.) 3 Department of Animal Science, Cornell University, 507 Tower Road, Ithaca, NY 14853, USA 4 Quantitative Veterinary Epidemiology Group, Wageningen University and Research, Wageningen, Radix Building, Droevendaalsesteeg 1, 6708PB Wageningen, The Netherlands 5 Department of Nutrition and Food Science, and Center for Food Safety and Security Systems, University of Maryland, College Park, MD 20742, USA;
[email protected] 6 Department of Clinical Studies, University of Pennsylvania, School of Veterinary Medicine, New Bolton Center, Kennett Square, PA 19348, USA;
[email protected] (T.F.);
[email protected] (R.H.W.) 7 College of Veterinary Medicine, Utrecht University, 3584 CL Utrecht, The Netherlands 8 GD Animal Health, 7400 AA Deventer, The Netherlands * Correspondence:
[email protected]; Tel.: +31-610-625-040 † These authors contributed equally to this work. Received: 22 February 2019; Accepted: 14 March 2019; Published: 20 March 2019 Abstract: Mycobacterial diseases are persistent and characterized by lengthy latent periods. Thus, epidemiological models require careful delineation of transmission routes. Understanding transmission routes will improve the quality and success of control programs.