Optimal Control of Vertically Transmitted Disease: an Integrated Approach
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Globalization and Infectious Diseases: a Review of the Linkages
TDR/STR/SEB/ST/04.2 SPECIAL TOPICS NO.3 Globalization and infectious diseases: A review of the linkages Social, Economic and Behavioural (SEB) Research UNICEF/UNDP/World Bank/WHO Special Programme for Research & Training in Tropical Diseases (TDR) The "Special Topics in Social, Economic and Behavioural (SEB) Research" series are peer-reviewed publications commissioned by the TDR Steering Committee for Social, Economic and Behavioural Research. For further information please contact: Dr Johannes Sommerfeld Manager Steering Committee for Social, Economic and Behavioural Research (SEB) UNDP/World Bank/WHO Special Programme for Research and Training in Tropical Diseases (TDR) World Health Organization 20, Avenue Appia CH-1211 Geneva 27 Switzerland E-mail: [email protected] TDR/STR/SEB/ST/04.2 Globalization and infectious diseases: A review of the linkages Lance Saker,1 MSc MRCP Kelley Lee,1 MPA, MA, D.Phil. Barbara Cannito,1 MSc Anna Gilmore,2 MBBS, DTM&H, MSc, MFPHM Diarmid Campbell-Lendrum,1 D.Phil. 1 Centre on Global Change and Health London School of Hygiene & Tropical Medicine Keppel Street, London WC1E 7HT, UK 2 European Centre on Health of Societies in Transition (ECOHOST) London School of Hygiene & Tropical Medicine Keppel Street, London WC1E 7HT, UK TDR/STR/SEB/ST/04.2 Copyright © World Health Organization on behalf of the Special Programme for Research and Training in Tropical Diseases 2004 All rights reserved. The use of content from this health information product for all non-commercial education, training and information purposes is encouraged, including translation, quotation and reproduction, in any medium, but the content must not be changed and full acknowledgement of the source must be clearly stated. -
Period of Presymptomatic Transmission
PERIOD OF PRESYMPTOMATIC TRANSMISSION RAG 17/09/2020 QUESTION Transmission of SARS-CoV-2 before onset of symptoms in the index is known, and this is supported by data on viral shedding. Based on the assumption that the viral load in the upper respiratory tract is highest one day before and the days immediately after onset of symptoms, current procedures for contact tracing (high and low risk contacts), go back two days before start of symptoms in the index (or sampling date in asymptomatic persons) (1), (2), (3). This is in line with the ECDC and WHO guidelines to consider all potential contacts of a case starting 48h before symptom onset (4) (5). The question was asked whether this period should be extended. BACKGROUND Viral load According to ECDC and WHO, viral RNA can be detected from one to three days before the onset of symptoms (6,7). The highest viral loads, as measured by RT-PCR, are observed around the day of symptom onset, followed by a gradual decline over time (1,3,8–10) . Period of transmission A much-cited study by He and colleagues and published in Nature used publicly available data from 77 transmission pairs to model infectiousness, using the reported serial interval (the period between symptom onset in infector-infectee) and combining this with the median incubation period. They conclude that infectiousness peaks around symptom onset. The initial article stated that the infectious period started at 2.3 days before symptom onset. However, a Swiss team spotted an error in their code and the authors issued a correction, stating the infectious period can start from as early as 12.3 days before symptom onset (11). -
Transitions in Symbiosis: Evidence for Environmental Acquisition and Social Transmission Within a Clade of Heritable Symbionts
The ISME Journal (2021) 15:2956–2968 https://doi.org/10.1038/s41396-021-00977-z ARTICLE Transitions in symbiosis: evidence for environmental acquisition and social transmission within a clade of heritable symbionts 1,2 3 2 4 2 Georgia C. Drew ● Giles E. Budge ● Crystal L. Frost ● Peter Neumann ● Stefanos Siozios ● 4 2 Orlando Yañez ● Gregory D. D. Hurst Received: 5 August 2020 / Revised: 17 March 2021 / Accepted: 6 April 2021 / Published online: 3 May 2021 © The Author(s) 2021. This article is published with open access Abstract A dynamic continuum exists from free-living environmental microbes to strict host-associated symbionts that are vertically inherited. However, knowledge of the forces that drive transitions in symbiotic lifestyle and transmission mode is lacking. Arsenophonus is a diverse clade of bacterial symbionts, comprising reproductive parasites to coevolving obligate mutualists, in which the predominant mode of transmission is vertical. We describe a symbiosis between a member of the genus Arsenophonus and the Western honey bee. The symbiont shares common genomic and predicted metabolic properties with the male-killing symbiont Arsenophonus nasoniae, however we present multiple lines of evidence that the bee 1234567890();,: 1234567890();,: Arsenophonus deviates from a heritable model of transmission. Field sampling uncovered spatial and seasonal dynamics in symbiont prevalence, and rapid infection loss events were observed in field colonies and laboratory individuals. Fluorescent in situ hybridisation showed Arsenophonus localised in the gut, and detection was rare in screens of early honey bee life stages. We directly show horizontal transmission of Arsenophonus between bees under varying social conditions. We conclude that honey bees acquire Arsenophonus through a combination of environmental exposure and social contacts. -
Rapid Evolution and Horizontal Gene Transfer in the Genome of a Male-Killing Wolbachia
bioRxiv preprint doi: https://doi.org/10.1101/2020.11.16.385294; this version posted November 17, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 1 Rapid evolution and horizontal gene transfer in the genome of a male-killing Wolbachia 2 Tom Hill1, Robert L. Unckless1 & Jessamyn I. Perlmutter1* 3 1. 4055 Haworth Hall, The Department of Molecular Biosciences, University of Kansas, 1200 Sunnyside 4 Ave, Lawrence, KS, 66045. 5 6 *Corresponding author: [email protected] 7 Keywords: Wolbachia, Drosophila innubila, male killing, genome evolution, phage WO 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.11.16.385294; this version posted November 17, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 8 Abstract 9 Wolbachia are widespread bacterial endosymbionts that infect a large proportion of insect species. 10 While some strains of this bacteria do not cause observable host phenotypes, many strains of Wolbachia 11 have some striking effects on their hosts. In some cases, these symbionts manipulate host reproduction to 12 increase the fitness of infected, transmitting females. Here we examine the genome and population 13 genomics of a male-killing Wolbachia strain, wInn, that infects Drosophila innubila mushroom-feeding 14 flies. -
Optimal Vaccine Subsidies for Endemic and Epidemic Diseases Matthew Goodkin-Gold, Michael Kremer, Christopher M
WORKING PAPER · NO. 2020-162 Optimal Vaccine Subsidies for Endemic and Epidemic Diseases Matthew Goodkin-Gold, Michael Kremer, Christopher M. Snyder, and Heidi L. Williams NOVEMBER 2020 5757 S. University Ave. Chicago, IL 60637 Main: 773.702.5599 bfi.uchicago.edu OPTIMAL VACCINE SUBSIDIES FOR ENDEMIC AND EPIDEMIC DISEASES Matthew Goodkin-Gold Michael Kremer Christopher M. Snyder Heidi L. Williams The authors are grateful for helpful comments from Witold Więcek and seminar participants in the Harvard Economics Department, Yale School of Medicine, the “Infectious Diseases in Poor Countries and the Social Sciences” conference at Cornell University, the DIMACS “Game Theoretic Approaches to Epidemiology and Ecology” workshop at Rutgers University, the “Economics of the Pharmaceutical Industry” roundtable at the Federal Trade Commission’s Bureau of Economics, the U.S. National Institutes of Health “Models of Infectious Disease Agent” study group at the Hutchinson Cancer Research Center in Seattle, the American Economic Association “Economics of Infectious Disease” session, and the Health and Pandemics (HELP!) Economics Working Group “Covid-19 and Vaccines” workshop. Maya Durvasula, Nishi Jain, Amrita Misha, Frank Schilbach, and Alfian Tjandra provided excellent research assistance. Williams gratefully acknowledges financial support from NIA grant number T32- AG000186 to the NBER. © 2020 by Matthew Goodkin-Gold, Michael Kremer, Christopher M. Snyder, and Heidi L. Williams. All rights reserved. Short sections of text, not to exceed two paragraphs, may be quoted without explicit permission provided that full credit, including © notice, is given to the source. Optimal Vaccine Subsidies for Endemic and Epidemic Diseases Matthew Goodkin-Gold, Michael Kremer, Christopher M. Snyder, and Heidi L. -
Some Simple Rules for Estimating Reproduction Numbers in the Presence of Reservoir Exposure Or Imported Cases
Some simple rules for estimating reproduction numbers in the presence of reservoir exposure or imported cases Angus McLure1*, Kathryn Glass1 1 Research School of Population Health, Australian National University, 62 Mills Rd, Acton, 0200, ACT, Australia * Corresponding author: [email protected] 1 Abstract The basic reproduction number () is a threshold parameter for disease extinction or survival in isolated populations. However no human population is fully isolated from other human or animal populations. We use compartmental models to derive simple rules for the basic reproduction number for populations with local person‐to‐person transmission and exposure from some other source: either a reservoir exposure or imported cases. We introduce the idea of a reservoir‐driven or importation‐driven disease: diseases that would become extinct in the population of interest without reservoir exposure or imported cases (since 1, but nevertheless may be sufficiently transmissible that many or most infections are acquired from humans in that population. We show that in the simplest case, 1 if and only if the proportion of infections acquired from the external source exceeds the disease prevalence and explore how population heterogeneity and the interactions of multiple strains affect this rule. We apply these rules in two cases studies of Clostridium difficile infection and colonisation: C. difficile in the hospital setting accounting for imported cases, and C. difficile in the general human population accounting for exposure to animal reservoirs. We demonstrate that even the hospital‐adapted, highly‐transmissible NAP1/RT027 strain of C. difficile had a reproduction number <1 in a landmark study of hospitalised patients and therefore was sustained by colonised and infected admissions to the study hospital. -
Measles: Chapter 7.1 Chapter 7: Measles Paul A
VPD Surveillance Manual 7 Measles: Chapter 7.1 Chapter 7: Measles Paul A. Gastanaduy, MD, MPH; Susan B. Redd; Nakia S. Clemmons, MPH; Adria D. Lee, MSPH; Carole J. Hickman, PhD; Paul A. Rota, PhD; Manisha Patel, MD, MS I. Disease Description Measles is an acute viral illness caused by a virus in the family paramyxovirus, genus Morbillivirus. Measles is characterized by a prodrome of fever (as high as 105°F) and malaise, cough, coryza, and conjunctivitis, followed by a maculopapular rash.1 The rash spreads from head to trunk to lower extremities. Measles is usually a mild or moderately severe illness. However, measles can result in complications such as pneumonia, encephalitis, and death. Approximately one case of encephalitis2 and two to three deaths may occur for every 1,000 reported measles cases.3 One rare long-term sequelae of measles virus infection is subacute sclerosing panencephalitis (SSPE), a fatal disease of the central nervous system that generally develops 7–10 years after infection. Among persons who contracted measles during the resurgence in the United States (U.S.) in 1989–1991, the risk of SSPE was estimated to be 7–11 cases/100,000 cases of measles.4 The risk of developing SSPE may be higher when measles occurs prior to the second year of life.4 The average incubation period for measles is 11–12 days,5 and the average interval between exposure and rash onset is 14 days, with a range of 7–21 days.1, 6 Persons with measles are usually considered infectious from four days before until four days after onset of rash with the rash onset being considered as day zero. -
A New Twenty-First Century Science for Effective Epidemic Response
Review A new twenty-first century science for effective epidemic response https://doi.org/10.1038/s41586-019-1717-y Juliet Bedford1, Jeremy Farrar2*, Chikwe Ihekweazu3, Gagandeep Kang4, Marion Koopmans5 & John Nkengasong6 Received: 10 June 2019 Accepted: 24 September 2019 With rapidly changing ecology, urbanization, climate change, increased travel and Published online: 6 November 2019 fragile public health systems, epidemics will become more frequent, more complex and harder to prevent and contain. Here we argue that our concept of epidemics must evolve from crisis response during discrete outbreaks to an integrated cycle of preparation, response and recovery. This is an opportunity to combine knowledge and skills from all over the world—especially at-risk and afected communities. Many disciplines need to be integrated, including not only epidemiology but also social sciences, research and development, diplomacy, logistics and crisis management. This requires a new approach to training tomorrow’s leaders in epidemic prevention and response. connected, high-density urban areas (particularly relevant to Ebola, Anniversary dengue, influenza and severe acute respiratory syndrome-related coro- collection: navirus SARS-CoV). These factors and effects combine and interact, go.nature.com/ fuelling more-complex epidemics. nature150 Although rare compared to those diseases that cause the majority of the burden on population health, the nature of such epidemics disrupts health systems, amplifies mistrust among communities and creates high and long-lasting socioeconomic effects, especially in low- and When Nature published its first issue in 18691, a new understanding of middle-income countries. Their increasing frequency demands atten- infectious diseases was taking shape. The work of William Farr2, Ignaz tion. -
Superspreading of Airborne Pathogens in a Heterogeneous World Julius B
www.nature.com/scientificreports OPEN Superspreading of airborne pathogens in a heterogeneous world Julius B. Kirkegaard*, Joachim Mathiesen & Kim Sneppen Epidemics are regularly associated with reports of superspreading: single individuals infecting many others. How do we determine if such events are due to people inherently being biological superspreaders or simply due to random chance? We present an analytically solvable model for airborne diseases which reveal the spreading statistics of epidemics in socio-spatial heterogeneous spaces and provide a baseline to which data may be compared. In contrast to classical SIR models, we explicitly model social events where airborne pathogen transmission allows a single individual to infect many simultaneously, a key feature that generates distinctive output statistics. We fnd that diseases that have a short duration of high infectiousness can give extreme statistics such as 20% infecting more than 80%, depending on the socio-spatial heterogeneity. Quantifying this by a distribution over sizes of social gatherings, tracking data of social proximity for university students suggest that this can be a approximated by a power law. Finally, we study mitigation eforts applied to our model. We fnd that the efect of banning large gatherings works equally well for diseases with any duration of infectiousness, but depends strongly on socio-spatial heterogeneity. Te statistics of an on-going epidemic depend on a number of factors. Most directly: How easily is it transmit- ted? And how long are individuals afected and infectious? Scientifc papers and news paper articles alike tend to summarize the intensity of epidemics in a single number, R0 . Tis basic reproduction number is a measure of the average number of individuals an infected patient will successfully transmit the disease to. -
Using Proper Mean Generation Intervals in Modeling of COVID-19
ORIGINAL RESEARCH published: 05 July 2021 doi: 10.3389/fpubh.2021.691262 Using Proper Mean Generation Intervals in Modeling of COVID-19 Xiujuan Tang 1, Salihu S. Musa 2,3, Shi Zhao 4,5, Shujiang Mei 1 and Daihai He 2* 1 Shenzhen Center for Disease Control and Prevention, Shenzhen, China, 2 Department of Applied Mathematics, The Hong Kong Polytechnic University, Hong Kong, China, 3 Department of Mathematics, Kano University of Science and Technology, Wudil, Nigeria, 4 The Jockey Club School of Public Health and Primary Care, Chinese University of Hong Kong, Hong Kong, China, 5 Shenzhen Research Institute of Chinese University of Hong Kong, Shenzhen, China In susceptible–exposed–infectious–recovered (SEIR) epidemic models, with the exponentially distributed duration of exposed/infectious statuses, the mean generation interval (GI, time lag between infections of a primary case and its secondary case) equals the mean latent period (LP) plus the mean infectious period (IP). It was widely reported that the GI for COVID-19 is as short as 5 days. However, many works in top journals used longer LP or IP with the sum (i.e., GI), e.g., >7 days. This discrepancy will lead to overestimated basic reproductive number and exaggerated expectation of Edited by: infection attack rate (AR) and control efficacy. We argue that it is important to use Reza Lashgari, suitable epidemiological parameter values for proper estimation/prediction. Furthermore, Institute for Research in Fundamental we propose an epidemic model to assess the transmission dynamics of COVID-19 Sciences, Iran for Belgium, Israel, and the United Arab Emirates (UAE). -
Mumps Public Information
Louisiana Office of Public Health Infectious Disease Epidemiology Section Phone: 1-800-256-2748 www.infectiousdisease.dhh.louisiana.gov Mumps What is mumps? How is mumps diagnosed? Mumps is a disease that is caused by the mumps virus. It spreads Mumps is diagnosed by a combination of symptoms and physical easily through coughing and sneezing. Mumps can cause fever, signs and laboratory confirmation of the virus, as not all cases headache, body aches, fatigue and inflammation of the salivary develop characteristic parotitis, and not all cases of parotitis are (spit) glands, which can lead to swelling of the cheeks and jaws. caused by mumps. Who gets mumps? What is the treatment for mumps? Mumps is a common childhood disease, but adults can also get There is no “cure” for mumps, only supportive treatment (bed mumps. While vaccination reduces the chances of getting ill rest, fluids and fever reduction). Most cases will recover on their considerably, even those fully immunized can get the disease. own. How do people get mumps? If someone becomes very ill, he/she should seek medical Mumps is spread from person to person. When an infected attention. The ill person should call the doctor in advance so that person talks, coughs or sneezes, the virus is released into the air he/she doesn’t have to sit in the waiting room for a long time and and enters another person’s body through the nose, mouth or possibly infect other patients. throat. People can also become sick if they eat food or use utensils, cups or other objects that have come into contact with How can mumps be prevented? the mucus or saliva (spit) from an infected person. -
THE CORONAVIRUS WILL BECOME ENDEMIC a Nature Survey Shows Many Scientists Expect SARS-Cov-2 Is Here to Stay, but It Could Pose Less Danger Over Time
Feature LISELOTTE SABROE/RITZAU SCANPIX/AFP/GETTY SABROE/RITZAU LISELOTTE Children in Copenhagen play during the SARS-CoV-2 pandemic. Endemic viruses are often first encountered in childhood. THE CORONAVIRUS WILL BECOME ENDEMIC A Nature survey shows many scientists expect SARS-CoV-2 is here to stay, but it could pose less danger over time. By Nicky Phillips or much of the past year, life in Western beginning of the year after a security guard at than 100 immunologists, infectious-disease Australia has been coronavirus-free. a hotel where visitors were quarantined tested researchers and virologists working on the coro- Friends gathered in pubs; people positive for the virus. But the experience in navirus whether it could be eradicated. Almost kissed and hugged their relatives; Western Australia has provided a glimpse into 90% of respondents think that the coronavirus children went to school without tem- a life free from the SARS-CoV-2 coronavirus. If will become endemic — meaning that it will con- perature checks or wearing masks. other regions, aided by vaccines, aimed for a tinue to circulate in pockets of the global popu- The state maintained this envia- similar zero-COVID strategy, then could the lation for years to come (see 'Endemic future'). ble position only by placing heavy world hope to rid itself of the virus? “Eradicating this virus right now from the Frestrictions on travel and imposing lockdowns It’s a beautiful dream but most scientists think world is a lot like trying to plan the construction — some regions entered a snap lockdown at the it’s improbable.