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Pseudodidymellaceae Fam. Nov.: Phylogenetic Affiliations Of
available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 87: 187–206 (2017). Pseudodidymellaceae fam. nov.: Phylogenetic affiliations of mycopappus-like genera in Dothideomycetes A. Hashimoto1,2, M. Matsumura1,3, K. Hirayama4, R. Fujimoto1, and K. Tanaka1,3* 1Faculty of Agriculture and Life Sciences, Hirosaki University, 3 Bunkyo-cho, Hirosaki, Aomori, 036-8561, Japan; 2Research Fellow of the Japan Society for the Promotion of Science, 5-3-1 Kojimachi, Chiyoda-ku, Tokyo, 102-0083, Japan; 3The United Graduate School of Agricultural Sciences, Iwate University, 18–8 Ueda 3 chome, Morioka, 020-8550, Japan; 4Apple Experiment Station, Aomori Prefectural Agriculture and Forestry Research Centre, 24 Fukutami, Botandaira, Kuroishi, Aomori, 036-0332, Japan *Correspondence: K. Tanaka, [email protected] Abstract: The familial placement of four genera, Mycodidymella, Petrakia, Pseudodidymella, and Xenostigmina, was taxonomically revised based on morphological observations and phylogenetic analyses of nuclear rDNA SSU, LSU, tef1, and rpb2 sequences. ITS sequences were also provided as barcode markers. A total of 130 sequences were newly obtained from 28 isolates which are phylogenetically related to Melanommataceae (Pleosporales, Dothideomycetes) and its relatives. Phylo- genetic analyses and morphological observation of sexual and asexual morphs led to the conclusion that Melanommataceae should be restricted to its type genus Melanomma, which is characterised by ascomata composed of a well-developed, carbonaceous peridium, and an aposphaeria-like coelomycetous asexual morph. Although Mycodidymella, Petrakia, Pseudodidymella, and Xenostigmina are phylogenetically related to Melanommataceae, these genera are characterised by epi- phyllous, lenticular ascomata with well-developed basal stroma in their sexual morphs, and mycopappus-like propagules in their asexual morphs, which are clearly different from those of Melanomma. -
South American Cacti in Time and Space: Studies on the Diversification of the Tribe Cereeae, with Particular Focus on Subtribe Trichocereinae (Cactaceae)
Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2013 South American Cacti in time and space: studies on the diversification of the tribe Cereeae, with particular focus on subtribe Trichocereinae (Cactaceae) Lendel, Anita Posted at the Zurich Open Repository and Archive, University of Zurich ZORA URL: https://doi.org/10.5167/uzh-93287 Dissertation Published Version Originally published at: Lendel, Anita. South American Cacti in time and space: studies on the diversification of the tribe Cereeae, with particular focus on subtribe Trichocereinae (Cactaceae). 2013, University of Zurich, Faculty of Science. South American Cacti in Time and Space: Studies on the Diversification of the Tribe Cereeae, with Particular Focus on Subtribe Trichocereinae (Cactaceae) _________________________________________________________________________________ Dissertation zur Erlangung der naturwissenschaftlichen Doktorwürde (Dr.sc.nat.) vorgelegt der Mathematisch-naturwissenschaftlichen Fakultät der Universität Zürich von Anita Lendel aus Kroatien Promotionskomitee: Prof. Dr. H. Peter Linder (Vorsitz) PD. Dr. Reto Nyffeler Prof. Dr. Elena Conti Zürich, 2013 Table of Contents Acknowledgments 1 Introduction 3 Chapter 1. Phylogenetics and taxonomy of the tribe Cereeae s.l., with particular focus 15 on the subtribe Trichocereinae (Cactaceae – Cactoideae) Chapter 2. Floral evolution in the South American tribe Cereeae s.l. (Cactaceae: 53 Cactoideae): Pollination syndromes in a comparative phylogenetic context Chapter 3. Contemporaneous and recent radiations of the world’s major succulent 86 plant lineages Chapter 4. Tackling the molecular dating paradox: underestimated pitfalls and best 121 strategies when fossils are scarce Outlook and Future Research 207 Curriculum Vitae 209 Summary 211 Zusammenfassung 213 Acknowledgments I really believe that no one can go through the process of doing a PhD and come out without being changed at a very profound level. -
System for Satellite-Based Classification of Plant
ecologies Article Genus-Physiognomy-Ecosystem (GPE) System for Satellite-Based Classification of Plant Communities Ram C. Sharma Department of Informatics, Tokyo University of Information Sciences, 4-1 Onaridai, Wakaba, Chiba 265-8501, Japan; [email protected]; Tel.: +81-43-236-4603 Abstract: Vegetation mapping and monitoring is important as the composition and distribution of vegetation has been greatly influenced by land use change and the interaction of land use change and climate change. The purpose of vegetation mapping is to discover the extent and distribution of plant communities within a geographical area of interest. The paper introduces the Genus-Physiognomy- Ecosystem (GPE) system for the organization of plant communities from the perspective of satellite remote sensing. It was conceived for broadscale operational vegetation mapping by organizing plant communities according to shared genus and physiognomy/ecosystem inferences, and it offers an intermediate level between the physiognomy/ecosystem and dominant species for the organi- zation of plant communities. A machine learning and cross-validation approach was employed by utilizing multi-temporal Landsat 8 satellite images on a regional scale for the classification of plant communities at three hierarchical levels: (i) physiognomy, (ii) GPE, and (iii) dominant species. The classification at the dominant species level showed many misclassifications and undermined its application for broadscale operational mapping, whereas the GPE system was able to lessen the complexities associated with the dominant species level classification while still being capable of distinguishing a wider variety of plant communities. The GPE system therefore provides an easy-to-understand approach for the operational mapping of plant communities, particularly on a Citation: Sharma, R.C. -
Report of Rapid Biodiversity Assessments at Cenwanglaoshan Nature Reserve, Northwest Guangxi, China, 1999 and 2002
Report of Rapid Biodiversity Assessments at Cenwanglaoshan Nature Reserve, Northwest Guangxi, China, 1999 and 2002 Kadoorie Farm and Botanic Garden in collaboration with Guangxi Zhuang Autonomous Region Forestry Department Guangxi Forestry Survey and Planning Institute South China Institute of Botany South China Normal University Institute of Zoology, CAS March 2003 South China Forest Biodiversity Survey Report Series: No. 27 (Online Simplified Version) Report of Rapid Biodiversity Assessments at Cenwanglaoshan Nature Reserve, Northwest Guangxi, China, 1999 and 2002 Editors John R. Fellowes, Bosco P.L. Chan, Michael W.N. Lau, Ng Sai-Chit and Gloria L.P. Siu Contributors Kadoorie Farm and Botanic Garden: Gloria L.P. Siu (GS) Bosco P.L. Chan (BC) John R. Fellowes (JRF) Michael W.N. Lau (ML) Lee Kwok Shing (LKS) Ng Sai-Chit (NSC) Graham T. Reels (GTR) Roger C. Kendrick (RCK) Guangxi Zhuang Autonomous Region Forestry Department: Xu Zhihong (XZH) Pun Fulin (PFL) Xiao Ma (XM) Zhu Jindao (ZJD) Guangxi Forestry Survey and Planning Institute (Comprehensive Tan Wei Fu (TWF) Planning Branch): Huang Ziping (HZP) Guangxi Natural History Museum: Mo Yunming (MYM) Zhou Tianfu (ZTF) South China Institute of Botany: Chen Binghui (CBH) Huang Xiangxu (HXX) Wang Ruijiang (WRJ) South China Normal University: Li Zhenchang (LZC) Chen Xianglin (CXL) Institute of Zoology CAS (Beijing): Zhang Guoqing (ZGQ) Chen Deniu (CDN) Nanjing University: Chen Jianshou (CJS) Wang Songjie (WSJ) Xinyang Teachers’ College: Li Hongjing (LHJ) Voluntary specialist: Keith D.P. Wilson (KW) Background The present report details the findings of visits to Northwest Guangxi by members of Kadoorie Farm and Botanic Garden (KFBG) in Hong Kong and their colleagues, as part of KFBG's South China Biodiversity Conservation Programme. -
Original Article Title: POLLEN TUBE ACCESS to the OVULE IS
Annals of Botany 119 (6): 989-1000 (2017) 1 Original article 2 Title: 3 POLLEN TUBE ACCESS TO THE OVULE IS MEDIATED BY GLYCOPROTEIN 4 SECRETION ON THE OBTURATOR OF APPLE (MALUS X DOMESTICA, BORKH) 5 Authors: 6 Juan M. Losada1,2,3,4* 7 María Herrero4 8 1 Arnold Arboretum of Harvard University. 1300 Centre St. Boston, MA 02131. 9 2 Department of Organismic and Evolutionary Biology, Harvard University. 16 Divinity Ave, 10 Cambridge, MA 02138. 11 3 Department of Ecology and Evolutionary Biology, Brown University. 80 Waterman Street 12 Providence, RI 02912. 13 4Pomology Department, Aula Dei Experimental Station-CSIC. Avda Montañana 1005. 50059. 14 Zaragoza, Spain. 15 Running title: Secretions of the apple obturator 16 *E-mail address: [email protected] 17 1 Annals of Botany 119 (6): 989-1000 (2017) 1 ABSTRACT 2 Background and Aims Within the ovary, the obturator bridges the pathway of the pollen tube 3 from the style to the ovule. Despite its widespread presence among flowering plants, its function 4 has been only studied in a handful of species and the molecules involved in pollen tube-obturator 5 crosstalk have not been explored hitherto. This work evaluates the involvement of glucans and 6 glycoproteins on pollen tube growth in the obturator of apple flowers (Malus x domestica). 7 Methods Pollen tube kinetics was sequentially examined in the pistil and related to changes 8 occurring on the obturator using histochemistry and inmunocytochemistry. To discriminate 9 between changes in the obturator induced by pollen tubes from those developmentally regulated, 10 both pollinated and unpollinated pistils were examined. -
High-Throughput Sequencing of 5S-IGS Rdna in Fagus L. (Fagaceae) Reveals Complex Evolutionary Patterns and Hybrid Origin of Modern Species
bioRxiv preprint doi: https://doi.org/10.1101/2021.02.26.433057; this version posted February 27, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license. Cardoni, Piredda et al. High-Throughput Sequencing of Fagus 5S-IGS rDNA High-Throughput Sequencing of 5S-IGS rDNA in Fagus L. (Fagaceae) reveals complex evolutionary patterns and hybrid origin of modern species Simone Cardoni1, Roberta Piredda2, Thomas Denk3, Guido W. Grimm4, Aristotelis C. Papageorgiou5, Ernst-Detlef Schulze6, Anna Scoppola1, Parvin Salehi Shanjani7, Yoshihisa Suyama8, Nobuhiro Tomaru9, James R.P. Worth10, Marco Cosimo Simeone1* Affiliations 1Department of Agricultural and Forestry Science (DAFNE), Università degli studi della Tuscia, 01100 Viterbo, Italy 2Department of Veterinary Medicine, University of Bari, 70010 Valenzano, Italy 3Swedish Museum of Natural History, Stockholm, 10405 Sweden 4Unaffiliated, Orléans, France, ORCID ID: 0000-0003-0674-3553 5Department of Molecular Biology and Genetics, Democritus University of Thrace, Alexandroupolis, Greece 6Max-Planck Institute for Biogeochemistry, 07701 Jena, Germany 7Natural Resources Gene Bank, Research Institute of Forests and Rangelands, Agricultural Research, Education and Extension Organization, Tehran, Iran 8Graduate School of Agricultural Science, Tohoku University, Osaki, Miyagi 989-6711 Japan 9Graduate School of Bioagricultural Sciences, Nagoya University, Chikusa-ku, Nagoya, 464- 8601, Japan 10Ecological Genetics Laboratory, Forestry and Forest Products Research Institute (FFPRI), Tsukuba, Ibaraki, 305-8687 Japan * Corresponding author Marco Cosimo Simeone; [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.02.26.433057; this version posted February 27, 2021. -
Literaturverzeichnis
Literaturverzeichnis Abaimov, A.P., 2010: Geographical Distribution and Ackerly, D.D., 2009: Evolution, origin and age of Genetics of Siberian Larch Species. In Osawa, A., line ages in the Californian and Mediterranean flo- Zyryanova, O.A., Matsuura, Y., Kajimoto, T. & ras. Journal of Biogeography 36, 1221–1233. Wein, R.W. (eds.), Permafrost Ecosystems. Sibe- Acocks, J.P.H., 1988: Veld Types of South Africa. 3rd rian Larch Forests. Ecological Studies 209, 41–58. Edition. Botanical Research Institute, Pretoria, Abbadie, L., Gignoux, J., Le Roux, X. & Lepage, M. 146 pp. (eds.), 2006: Lamto. Structure, Functioning, and Adam, P., 1990: Saltmarsh Ecology. Cambridge Uni- Dynamics of a Savanna Ecosystem. Ecological Stu- versity Press. Cambridge, 461 pp. dies 179, 415 pp. Adam, P., 1994: Australian Rainforests. Oxford Bio- Abbott, R.J. & Brochmann, C., 2003: History and geography Series No. 6 (Oxford University Press), evolution of the arctic flora: in the footsteps of Eric 308 pp. Hultén. Molecular Ecology 12, 299–313. Adam, P., 1994: Saltmarsh and mangrove. In Groves, Abbott, R.J. & Comes, H.P., 2004: Evolution in the R.H. (ed.), Australian Vegetation. 2nd Edition. Arctic: a phylogeographic analysis of the circu- Cambridge University Press, Melbourne, pp. marctic plant Saxifraga oppositifolia (Purple Saxi- 395–435. frage). New Phytologist 161, 211–224. Adame, M.F., Neil, D., Wright, S.F. & Lovelock, C.E., Abbott, R.J., Chapman, H.M., Crawford, R.M.M. & 2010: Sedimentation within and among mangrove Forbes, D.G., 1995: Molecular diversity and deri- forests along a gradient of geomorphological set- vations of populations of Silene acaulis and Saxi- tings. -
Improvement and Silviculture of Beech Proceedings from the 7Th
Improvement and Silviculture of Beech Proceedings from the 7th International Beech Symposium IUFRO Research Group 1.10.00 10-20 May 2004, Tehran, Iran Editors: Khosro Sagheb-Talebi, Palle Madsen and Kazuhiko Terazawa Research Institute of Forests and Rangelands, Iran University of Tehran, Faculty of Natural Resources, Iran Forest, Range and Watershed Organization, Iran Danish Centre for Forest, Landscape and Planning, Denmark Hokkaido Forestry Research Institute, Japan Improvement and Silviculture of Beech Proceedings from the 7th International Beech Symposium IUFRO Research Group 1.10.00 10-20 May 2004, Tehran, Iran Editors: Khosro Sagheb-Talebi, Palle Madsen and Kazuhiko Terazawa Published by Research Insitute of Forests and Rangelands (RIFR), Iran Scientific committee: • Amani Manuchehr (Iran) • Assareh Mohammad Hassan (Iran) • Kerr Garry (England) • Lüpke Burghard von (Germany) • Madsen Palle (Denmark) • Marvie-Mohadjer Mohammad Reza (Iran) • Mosandle Reinhard (Germany) • Sagheb-Talebi Khosro (Iran) • Salehi Parviz (Iran) • Schütz Jean-Philippe (Switzerland) • Seifollahian Majid (Iran) • Teissier du Cros Eric (France) • Terazawa Kazuhiko (Japan) • Zahedi Amiri Ghavomedin (Iran) * Akhavan Reza (Secretary) Executive committee: • Boujari Jamshid • Ebrahimi Rastaghi Morteza • Etemad Vahid • Khodaie Mahammad Bagher • Pourtahmasi Kambiz • Rahimiyan Mohammed Sadegh • Sagheb-Talebi Khosro • Yazdani Shahbaz * Hassani Majid (Secretary) 2 Welcome address Forests in Iran, Constraints and Strategies By definition, Iran is categorized a country with low forest cover. Only 7.6% of its land is covered by forest ecosystems. Despite of this the vital role of these ecosystems can not be ignored, dependence of daily life of local population, recreational affects, soil and water conservation, and more important, its facilitation for sustaining high biodiversity of the country already have been recognized. -
Geobotany Studies
Geobotany Studies Basics, Methods and Case Studies Editor Franco Pedrotti University of Camerino Via Pontoni 5 62032 Camerino Italy Editorial Board: S. Bartha, Va´cra´tot, Hungary F. Bioret, University of Brest, France E. O. Box, University of Georgia, Athens, Georgia, USA A. Cˇ arni, Slovenian Academy of Sciences, Ljubljana (Slovenia) K. Fujiwara, Yokohama City University, Japan D. Gafta, “Babes-Bolyai” University Cluj-Napoca (Romania) J. Loidi, University of Bilbao, Spain L. Mucina, University of Perth, Australia S. Pignatti, Universita degli Studi di Roma “La Sapienza”, Italy R. Pott, University of Hannover, Germany A. Vela´squez, Centro de Investigacion en Scie´ncias Ambientales, Morelia, Mexico R. Venanzoni, University of Perugia, Italy For further volumes: http://www.springer.com/series/10526 About the Series The series includes outstanding monographs and collections of papers on a given topic in the following fields: Phytogeography, Phytosociology, Plant Community Ecology, Biocoenology, Vegetation Science, Eco-informatics, Landscape Ecology, Vegetation Mapping, Plant Conservation Biology and Plant Diversity. Contributions are expected to reflect the latest theoretical and methodological developments or to present new applications at broad spatial or temporal scales that could reinforce our understanding of ecological processes acting at the phytocoenosis and landscape level. Case studies based on large data sets are also considered, provided that they support refinement of habitat classification, conservation of plant diversity, or -
FAGACEAE 1. FAGUS Linnaeus, Sp. Pl. 2: 997. 1753
Flora of China 4: 314–400. 1999. 1 FAGACEAE 壳斗科 qiao dou ke Huang Chengjiu (黄成就 Huang Ching-chieu)1, Zhang Yongtian (张永田 Chang Yong-tian)2; Bruce Bartholomew3 Trees or rarely shrubs, monoecions, evergreen or deciduous. Stipules usually early deciduous. Leaves alternate, sometimes false-whorled in Cyclobalanopsis. Inflorescences unisexual or androgynous with female cupules at the base of an otherwise male inflorescence. Male inflorescences a pendulous head or erect or pendulous catkin, sometimes branched; flowers in dense cymules. Male flower: sepals 4–6(–9), scalelike, connate or distinct; petals absent; filaments filiform; anthers dorsifixed or versatile, opening by longitudinal slits; with or without a rudimentary pistil. Female inflorescences of 1–7 or more flowers subtended individually or collectively by a cupule formed from numerous fused bracts, arranged individually or in small groups along an axis or at base of an androgynous inflorescence or on a separate axis. Female flower: perianth 1–7 or more; pistil 1; ovary inferior, 3–6(– 9)-loculed; style and carpels as many as locules; placentation axile; ovules 2 per locule. Fruit a nut. Seed usually solitary by abortion (but may be more than 1 in Castanea, Castanopsis, Fagus, and Formanodendron), without endosperm; embryo large. Seven to 12 genera (depending on interpretation) and 900–1000 species: worldwide except for tropical and S Africa; seven genera and 294 species (163 endemic, at least three introduced) in China. Many species are important timber trees. Nuts of Fagus, Castanea, and of most Castanopsis species are edible, and oil is extracted from nuts of Fagus. Nuts of most species of this family contain copious amounts of water soluble tannin. -
The Complete Chloroplast Genome of Fagus Crenata (Subgenus Fagus) and Comparison with F
The complete chloroplast genome of Fagus crenata (subgenus Fagus) and comparison with F. engleriana (subgenus Engleriana) James R. P. Worth1, Luxian Liu2, Fu-Jin Wei1 and Nobuhiro Tomaru3 1 Department of Forest Molecular Genetics and Biotechnology, Forestry and Forest Products Research Institute, Tsukuba, Japan 2 Key Laboratory of Plant Stress Biology, Laboratory of Plant Germplasm and Genetic Engineering, College of Life Sciences, Henan University, Kaifeng, China 3 Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan ABSTRACT This study reports the whole chloroplast genome of Fagus crenata (subgenus Fagus), a foundation tree species of Japanese temperate forests. The genome has a total of 158,227 bp containing 111 genes, including 76 protein-coding genes, 31 tRNA genes and 4 ribosomal RNA genes. Comparison with the only other published Fagus chloroplast genome, F. engeleriana (subgenus Engleriana) shows that the genomes are relatively conserved with no inversions or rearrangements observed while the proportion of nucleotide sites differing between the two species was equal to 0.0018. The six most variable regions were, in increasing order of variability, psbK-psbI, trnG-psbfM, rpl32, trnV, ndhI-ndh and ndhD-psaC. These highly variable chloroplast regions in addition to 160 chloroplast microsatellites identified (of which 46 were variable between the two species) will provide useful genetic resources for studies of the inter- and intra-specific genetic structure and diversity of this important northern hemisphere tree genus. Subjects Biodiversity, Evolutionary Studies, Genetics, Plant Science Keywords Beech, Chloroplast SSRs, Fagaceae phylogeny, Fagus crenata, Whole chloroplast Submitted 9 January 2019 genome, Chloroplast microsatellites Accepted 24 April 2019 Published 7 June 2019 INTRODUCTION Corresponding author James R. -
Communicationes 25.Indb
VÚLHM 2010 Communicationes Instituti Forestalis Bohemicae Cover: Dinaric fir-beech forest at the edge area of Rajhenav virgin forest remnant in the Kočev region – southern Slovenia (Photo: L. Kutnar) Communicationes Instituti Forestalis Bohemicae Volumen 25 Forestry and Game Management Research Institute Strnady 2010 ISSN 1211-2992 ISBN 978-80-7417-038-6 COST Action E52 Genetic resources of beech in Europe – current state Implementing output of COST Action E 52 Project „Evaluation of beech genetic resources for sustainable forestry“ (2006 – 2010) 3 COMMUNICATIONES INSTITUTI FORESTALIS BOHEMICAE, Vol. 25 Forestry and Game Management Research Institute 6WUQDG\-tORYLãWČ e-mail: [email protected], http://www.vulhm.cz 6HWWLQJ0JU(.UXSLþNRYi.âLPHURYi Editors: Josef Frýdl, Petr Novotný, John Fennessy & Georg von Wühlisch Printing Office: TISK CENTRUM, s. r. o. Number of copies: 200 4 Contents Preface ............................................................................................................................................7 Introductory note..............................................................................................................................8 PAPERS Hajri Haska The status of European beech (Fagus sylvatica L.) in Albania and its genetic resources..............................................................................................11 Hasmik Ghalachyan – Andranik Ghulijanyan Current state of oriental beech (Fagus orientalis LIPSKY) in Armenia ............................................26 Raphael Klumpp