8 Randomized Binary Search Trees
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Trees • Binary Trees • Newer Types of Tree Structures • M-Ary Trees
Data Organization and Processing Hierarchical Indexing (NDBI007) David Hoksza http://siret.ms.mff.cuni.cz/hoksza 1 Outline • Background • prefix tree • graphs • … • search trees • binary trees • Newer types of tree structures • m-ary trees • Typical tree type structures • B-tree • B+-tree • B*-tree 2 Motivation • Similarly as in hashing, the motivation is to find record(s) given a query key using only a few operations • unlike hashing, trees allow to retrieve set of records with keys from given range • Tree structures use “clustering” to efficiently filter out non relevant records from the data set • Tree-based indexes practically implement the index file data organization • for each search key, an indexing structure can be maintained 3 Drawbacks of Index(-Sequential) Organization • Static nature • when inserting a record at the beginning of the file, the whole index needs to be rebuilt • an overflow handling policy can be applied → the performance degrades as the file grows • reorganization can take a lot of time, especially for large tables • not possible for online transactional processing (OLTP) scenarios (as opposed to OLAP – online analytical processing) where many insertions/deletions occur 4 Tree Indexes • Most common dynamic indexing structure for external memory • When inserting/deleting into/from the primary file, the indexing structure(s) residing in the secondary file is modified to accommodate the new key • The modification of a tree is implemented by splitting/merging nodes • Used not only in databases • NTFS directory structure -
1 Suffix Trees
This material takes about 1.5 hours. 1 Suffix Trees Gusfield: Algorithms on Strings, Trees, and Sequences. Weiner 73 “Linear Pattern-matching algorithms” IEEE conference on automata and switching theory McCreight 76 “A space-economical suffix tree construction algorithm” JACM 23(2) 1976 Chen and Seifras 85 “Efficient and Elegegant Suffix tree construction” in Apos- tolico/Galil Combninatorial Algorithms on Words Another “search” structure, dedicated to strings. Basic problem: match a “pattern” (of length m) to “text” (of length n) • goal: decide if a given string (“pattern”) is a substring of the text • possibly created by concatenating short ones, eg newspaper • application in IR, also computational bio (DNA seqs) • if pattern avilable first, can build DFA, run in time linear in text • if text available first, can build suffix tree, run in time linear in pattern. • applications in computational bio. First idea: binary tree on strings. Inefficient because run over pattern many times. • fractional cascading? • realize only need one character at each node! Tries: • used to store dictionary of strings • trees with children indexed by “alphabet” • time to search equal length of query string • insertion ditto. • optimal, since even hashing requires this time to hash. • but better, because no “hash function” computed. • space an issue: – using array increases stroage cost by |Σ| – using binary tree on alphabet increases search time by log |Σ| 1 – ok for “const alphabet” – if really fussy, could use hash-table at each node. • size in worst case: sum of word lengths (so pretty much solves “dictionary” problem. But what about substrings? • Relevance to DNA searches • idea: trie of all n2 substrings • equivalent to trie of all n suffixes. -
KP-Trie Algorithm for Update and Search Operations
The International Arab Journal of Information Technology, Vol. 13, No. 6, November 2016 722 KP-Trie Algorithm for Update and Search Operations Feras Hanandeh1, Izzat Alsmadi2, Mohammed Akour3, and Essam Al Daoud4 1Department of Computer Information Systems, Hashemite University, Jordan 2, 3Department of Computer Information Systems, Yarmouk University, Jordan 4Computer Science Department, Zarqa University, Jordan Abstract: Radix-Tree is a space optimized data structure that performs data compression by means of cluster nodes that share the same branch. Each node with only one child is merged with its child and is considered as space optimized. Nevertheless, it can’t be considered as speed optimized because the root is associated with the empty string. Moreover, values are not normally associated with every node; they are associated only with leaves and some inner nodes that correspond to keys of interest. Therefore, it takes time in moving bit by bit to reach the desired word. In this paper we propose the KP-Trie which is consider as speed and space optimized data structure that is resulted from both horizontal and vertical compression. Keywords: Trie, radix tree, data structure, branch factor, indexing, tree structure, information retrieval. Received January 14, 2015; accepted March 23, 2015; Published online December 23, 2015 1. Introduction the exception of leaf nodes, nodes in the trie work merely as pointers to words. Data structures are a specialized format for efficient A trie, also called digital tree, is an ordered multi- organizing, retrieving, saving and storing data. It’s way tree data structure that is useful to store an efficient with large amount of data such as: Large data associative array where the keys are usually strings, bases. -
Balanced Trees Part One
Balanced Trees Part One Balanced Trees ● Balanced search trees are among the most useful and versatile data structures. ● Many programming languages ship with a balanced tree library. ● C++: std::map / std::set ● Java: TreeMap / TreeSet ● Many advanced data structures are layered on top of balanced trees. ● We’ll see several later in the quarter! Where We're Going ● B-Trees (Today) ● A simple type of balanced tree developed for block storage. ● Red/Black Trees (Today/Thursday) ● The canonical balanced binary search tree. ● Augmented Search Trees (Thursday) ● Adding extra information to balanced trees to supercharge the data structure. Outline for Today ● BST Review ● Refresher on basic BST concepts and runtimes. ● Overview of Red/Black Trees ● What we're building toward. ● B-Trees and 2-3-4 Trees ● Simple balanced trees, in depth. ● Intuiting Red/Black Trees ● A much better feel for red/black trees. A Quick BST Review Binary Search Trees ● A binary search tree is a binary tree with 9 the following properties: 5 13 ● Each node in the BST stores a key, and 1 6 10 14 optionally, some auxiliary information. 3 7 11 15 ● The key of every node in a BST is strictly greater than all keys 2 4 8 12 to its left and strictly smaller than all keys to its right. Binary Search Trees ● The height of a binary search tree is the 9 length of the longest path from the root to a 5 13 leaf, measured in the number of edges. 1 6 10 14 ● A tree with one node has height 0. -
Lecture 04 Linear Structures Sort
Algorithmics (6EAP) MTAT.03.238 Linear structures, sorting, searching, etc Jaak Vilo 2018 Fall Jaak Vilo 1 Big-Oh notation classes Class Informal Intuition Analogy f(n) ∈ ο ( g(n) ) f is dominated by g Strictly below < f(n) ∈ O( g(n) ) Bounded from above Upper bound ≤ f(n) ∈ Θ( g(n) ) Bounded from “equal to” = above and below f(n) ∈ Ω( g(n) ) Bounded from below Lower bound ≥ f(n) ∈ ω( g(n) ) f dominates g Strictly above > Conclusions • Algorithm complexity deals with the behavior in the long-term – worst case -- typical – average case -- quite hard – best case -- bogus, cheating • In practice, long-term sometimes not necessary – E.g. for sorting 20 elements, you dont need fancy algorithms… Linear, sequential, ordered, list … Memory, disk, tape etc – is an ordered sequentially addressed media. Physical ordered list ~ array • Memory /address/ – Garbage collection • Files (character/byte list/lines in text file,…) • Disk – Disk fragmentation Linear data structures: Arrays • Array • Hashed array tree • Bidirectional map • Heightmap • Bit array • Lookup table • Bit field • Matrix • Bitboard • Parallel array • Bitmap • Sorted array • Circular buffer • Sparse array • Control table • Sparse matrix • Image • Iliffe vector • Dynamic array • Variable-length array • Gap buffer Linear data structures: Lists • Doubly linked list • Array list • Xor linked list • Linked list • Zipper • Self-organizing list • Doubly connected edge • Skip list list • Unrolled linked list • Difference list • VList Lists: Array 0 1 size MAX_SIZE-1 3 6 7 5 2 L = int[MAX_SIZE] -
CSE 326: Data Structures Binary Search Trees
Announcements (1/23/09) CSE 326: Data Structures • HW #2 due now • HW #3 out today, due at beginning of class next Binary Search Trees Friday. • Project 2A due next Wed. night. Steve Seitz Winter 2009 • Read Chapter 4 1 2 ADTs Seen So Far The Dictionary ADT • seitz •Data: Steve • Stack •Priority Queue Seitz –a set of insert(seitz, ….) CSE 592 –Push –Insert (key, value) pairs –Pop – DeleteMin •ericm6 Eric • Operations: McCambridge – Insert (key, value) CSE 218 •Queue find(ericm6) – Find (key) • ericm6 • soyoung – Enqueue Then there is decreaseKey… Eric, McCambridge,… – Remove (key) Soyoung Shin – Dequeue CSE 002 •… The Dictionary ADT is also 3 called the “Map ADT” 4 A Modest Few Uses Implementations insert find delete •Sets • Unsorted Linked-list • Dictionaries • Networks : Router tables • Operating systems : Page tables • Unsorted array • Compilers : Symbol tables • Sorted array Probably the most widely used ADT! 5 6 Binary Trees Binary Tree: Representation • Binary tree is A – a root left right – left subtree (maybe empty) A pointerpointer A – right subtree (maybe empty) B C B C B C • Representation: left right left right pointerpointer pointerpointer D E F D E F Data left right G H D E F pointer pointer left right left right left right pointerpointer pointerpointer pointerpointer I J 7 8 Tree Traversals Inorder Traversal void traverse(BNode t){ A traversal is an order for if (t != NULL) visiting all the nodes of a tree + traverse (t.left); process t.element; Three types: * 5 traverse (t.right); • Pre-order: Root, left subtree, right subtree 2 4 } • In-order: Left subtree, root, right subtree } (an expression tree) • Post-order: Left subtree, right subtree, root 9 10 Binary Tree: Special Cases Binary Tree: Some Numbers… Recall: height of a tree = longest path from root to leaf. -
Heaps a Heap Is a Complete Binary Tree. a Max-Heap Is A
Heaps Heaps 1 A heap is a complete binary tree. A max-heap is a complete binary tree in which the value in each internal node is greater than or equal to the values in the children of that node. A min-heap is defined similarly. 97 Mapping the elements of 93 84 a heap into an array is trivial: if a node is stored at 90 79 83 81 index k, then its left child is stored at index 42 55 73 21 83 2k+1 and its right child at index 2k+2 01234567891011 97 93 84 90 79 83 81 42 55 73 21 83 CS@VT Data Structures & Algorithms ©2000-2009 McQuain Building a Heap Heaps 2 The fact that a heap is a complete binary tree allows it to be efficiently represented using a simple array. Given an array of N values, a heap containing those values can be built, in situ, by simply “sifting” each internal node down to its proper location: - start with the last 73 73 internal node * - swap the current 74 81 74 * 93 internal node with its larger child, if 79 90 93 79 90 81 necessary - then follow the swapped node down 73 * 93 - continue until all * internal nodes are 90 93 90 73 done 79 74 81 79 74 81 CS@VT Data Structures & Algorithms ©2000-2009 McQuain Heap Class Interface Heaps 3 We will consider a somewhat minimal maxheap class: public class BinaryHeap<T extends Comparable<? super T>> { private static final int DEFCAP = 10; // default array size private int size; // # elems in array private T [] elems; // array of elems public BinaryHeap() { . -
Assignment 3: Kdtree ______Due June 4, 11:59 PM
CS106L Handout #04 Spring 2014 May 15, 2014 Assignment 3: KDTree _________________________________________________________________________________________________________ Due June 4, 11:59 PM Over the past seven weeks, we've explored a wide array of STL container classes. You've seen the linear vector and deque, along with the associative map and set. One property common to all these containers is that they are exact. An element is either in a set or it isn't. A value either ap- pears at a particular position in a vector or it does not. For most applications, this is exactly what we want. However, in some cases we may be interested not in the question “is X in this container,” but rather “what value in the container is X most similar to?” Queries of this sort often arise in data mining, machine learning, and computational geometry. In this assignment, you will implement a special data structure called a kd-tree (short for “k-dimensional tree”) that efficiently supports this operation. At a high level, a kd-tree is a generalization of a binary search tree that stores points in k-dimen- sional space. That is, you could use a kd-tree to store a collection of points in the Cartesian plane, in three-dimensional space, etc. You could also use a kd-tree to store biometric data, for example, by representing the data as an ordered tuple, perhaps (height, weight, blood pressure, cholesterol). However, a kd-tree cannot be used to store collections of other data types, such as strings. Also note that while it's possible to build a kd-tree to hold data of any dimension, all of the data stored in a kd-tree must have the same dimension. -
CSCI 333 Data Structures Binary Trees Binary Tree Example Full And
Notes with the dark blue background CSCI 333 were prepared by the textbook author Data Structures Clifford A. Shaffer Chapter 5 Department of Computer Science 18, 20, 23, and 25 September 2002 Virginia Tech Copyright © 2000, 2001 Binary Trees Binary Tree Example A binary tree is made up of a finite set of Notation: Node, nodes that is either empty or consists of a children, edge, node called the root together with two parent, ancestor, binary trees, called the left and right descendant, path, subtrees, which are disjoint from each depth, height, level, other and from the root. leaf node, internal node, subtree. Full and Complete Binary Trees Full Binary Tree Theorem (1) Full binary tree: Each node is either a leaf or Theorem: The number of leaves in a non-empty internal node with exactly two non-empty children. full binary tree is one more than the number of internal nodes. Complete binary tree: If the height of the tree is d, then all leaves except possibly level d are Proof (by Mathematical Induction): completely full. The bottom level has all nodes to the left side. Base case: A full binary tree with 1 internal node must have two leaf nodes. Induction Hypothesis: Assume any full binary tree T containing n-1 internal nodes has n leaves. 1 Full Binary Tree Theorem (2) Full Binary Tree Corollary Induction Step: Given tree T with n internal Theorem: The number of null pointers in a nodes, pick internal node I with two leaf children. non-empty tree is one more than the Remove I’s children, call resulting tree T’. -
Splay Trees Last Changed: January 28, 2017
15-451/651: Design & Analysis of Algorithms January 26, 2017 Lecture #4: Splay Trees last changed: January 28, 2017 In today's lecture, we will discuss: • binary search trees in general • definition of splay trees • analysis of splay trees The analysis of splay trees uses the potential function approach we discussed in the previous lecture. It seems to be required. 1 Binary Search Trees These lecture notes assume that you have seen binary search trees (BSTs) before. They do not contain much expository or backtround material on the basics of BSTs. Binary search trees is a class of data structures where: 1. Each node stores a piece of data 2. Each node has two pointers to two other binary search trees 3. The overall structure of the pointers is a tree (there's a root, it's acyclic, and every node is reachable from the root.) Binary search trees are a way to store and update a set of items, where there is an ordering on the items. I know this is rather vague. But there is not a precise way to define the gamut of applications of search trees. In general, there are two classes of applications. Those where each item has a key value from a totally ordered universe, and those where the tree is used as an efficient way to represent an ordered list of items. Some applications of binary search trees: • Storing a set of names, and being able to lookup based on a prefix of the name. (Used in internet routers.) • Storing a path in a graph, and being able to reverse any subsection of the path in O(log n) time. -
Tree Structures
Tree Structures Definitions: o A tree is a connected acyclic graph. o A disconnected acyclic graph is called a forest o A tree is a connected digraph with these properties: . There is exactly one node (Root) with in-degree=0 . All other nodes have in-degree=1 . A leaf is a node with out-degree=0 . There is exactly one path from the root to any leaf o The degree of a tree is the maximum out-degree of the nodes in the tree. o If (X,Y) is a path: X is an ancestor of Y, and Y is a descendant of X. Root X Y CSci 1112 – Algorithms and Data Structures, A. Bellaachia Page 1 Level of a node: Level 0 or 1 1 or 2 2 or 3 3 or 4 Height or depth: o The depth of a node is the number of edges from the root to the node. o The root node has depth zero o The height of a node is the number of edges from the node to the deepest leaf. o The height of a tree is a height of the root. o The height of the root is the height of the tree o Leaf nodes have height zero o A tree with only a single node (hence both a root and leaf) has depth and height zero. o An empty tree (tree with no nodes) has depth and height −1. o It is the maximum level of any node in the tree. CSci 1112 – Algorithms and Data Structures, A. -
Binary Search Tree
ADT Binary Search Tree! Ellen Walker! CPSC 201 Data Structures! Hiram College! Binary Search Tree! •" Value-based storage of information! –" Data is stored in order! –" Data can be retrieved by value efficiently! •" Is a binary tree! –" Everything in left subtree is < root! –" Everything in right subtree is >root! –" Both left and right subtrees are also BST#s! Operations on BST! •" Some can be inherited from binary tree! –" Constructor (for empty tree)! –" Inorder, Preorder, and Postorder traversal! •" Some must be defined ! –" Insert item! –" Delete item! –" Retrieve item! The Node<E> Class! •" Just as for a linked list, a node consists of a data part and links to successor nodes! •" The data part is a reference to type E! •" A binary tree node must have links to both its left and right subtrees! The BinaryTree<E> Class! The BinaryTree<E> Class (continued)! Overview of a Binary Search Tree! •" Binary search tree definition! –" A set of nodes T is a binary search tree if either of the following is true! •" T is empty! •" Its root has two subtrees such that each is a binary search tree and the value in the root is greater than all values of the left subtree but less than all values in the right subtree! Overview of a Binary Search Tree (continued)! Searching a Binary Tree! Class TreeSet and Interface Search Tree! BinarySearchTree Class! BST Algorithms! •" Search! •" Insert! •" Delete! •" Print values in order! –" We already know this, it#s inorder traversal! –" That#s why it#s called “in order”! Searching the Binary Tree! •" If the tree is