Brad R. Ruhfel 2,8 , Volker Bittrich 3 , Claudia P. Bove 4 , Mats H. G
American Journal of Botany 98(2): 306–325. 2011. P HYLOGENY OF THE CLUSIOID CLADE (MALPIGHIALES): E VIDENCE FROM THE PLASTID AND MITOCHONDRIAL GENOMES 1 Brad R. Ruhfel 2,8 , Volker Bittrich 3 , Claudia P. Bove 4 , Mats H. G. Gustafsson 5 , C. Thomas Philbrick 6 , Rolf Rutishauser 7 , Zhenxiang Xi 2 , and Charles C. Davis 2,8 2 Department of Organismic and Evolutionary Biology, Harvard University Herbaria, 22 Divinity Avenue, Cambridge, Massachusetts 02138 USA; 3 Rua Dr. M á rio de Nucci, 500, Cidade Universit á ria 13083-290, Campinas, Brazil; 4 Departamento de Bot â nica, Museu Nacional, Universidade Federal do Rio de Janeiro, Quinta da Boa Vista, Rio de Janeiro 20940-040, Brazil; 5 Ecoinformatics and Biodiversity, Department of Biological Sciences, Aarhus University, Ole Worms All é , Building 1137, 8000 Å rhus C, Denmark; 6 Western Connecticut State University, Biological & Environmental Sciences, 181 White Street, Danbury, Connecticut 06810 USA; and 7 University of Zurich, Institute of Systematic Botany, Zollikerstrasse 107, CH-8008 Zurich, Switzerland • Premise of the study : The clusioid clade includes fi ve families (i.e., Bonnetiaceae, Calophyllaceae, Clusiaceae s.s., Hyperi- caceae, and Podostemaceae) represented by 94 genera and ~1900 species. Species in this clade form a conspicuous element of tropical forests worldwide and are important in horticulture, timber production, and pharmacology. We conducted a taxon-rich multigene phylogenetic analysis of the clusioids to clarify phylogenetic relationships in this clade. • Methods : We analyzed plastid ( matK , ndhF , and rbcL ) and mitochondrial (matR ) nucleotide sequence data using parsimony, maximum likelihood, and Bayesian inference. Our combined data set included 194 species representing all major clusioid subclades, plus numerous species spanning the taxonomic, morphological, and biogeographic breadth of the clusioid clade.
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