Organic Chemistry I
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A-PDF Split DEMO : Purchase from to Remove the Watermark
A-PDF Split DEMO : Purchase from www.A-PDF.com to remove the watermark Figure 7.5 (a) Transition state for E2H-syn elimination. (b) Transition state for E2H-anti elimination. (c) Transition state for E,C elimination. tion state similar to that shown in Figure 7.5~is expected, since base attacks the molecule backside to the leaving group but frontside to the /3 hydrogen. Let us now turn to the experimental results to see if these predictions are borne out in fact. It has long been known that E2H reactions normally give preferentially anti elimination. For example, reaction of meso-stilbene dibromide with potassium ethoxide gives cis-bromostilbene (Reaction 7.39), whereas reaction of the D,L-dibromide gives the trans product (Reaction 7.40).lo2 A multitude of other examples exist-see, for example, note 64 (p. 355) and note 82 (p. 362). E2H reactions do, however, give syn elimination when: (1) an H-X di- hedral angle of 0" is achievable but one of 180" is not or, put another way, H and X can become syn-periplanar but not trans-periplanar ; (2) a syn hydrogen is much more reactive than the anti ones; (3) syn elimination is favored for steric reasons; and (4) an anionic base that remains coordinated with its cation, that, in turn, is coordinated with the leaving group, is used as catalyst. The very great importance of category 4 has only begun to be fully realized in the early 1970s. lo2 P. Pfeiffer, 2. Physik. Chem. Leibrig, 48, 40 (1904). 1,2-Elimination Reactions 371 An example of category 1 is found in the observation by Brown and Liu that eliminations from the rigid ring system 44, induced by the sodium salt of 2- cyclohexylcyclohexanol in triglyme, produces norborene (98 percent) but no 2-de~teronorbornene.~~~The dihedral angle between D and tosylate is O", but Crown ether present: No Yes that between H and tosylate is 120". -
Chemicals, Rare Chemicals, Reagents & Solvents
Annual Procurement Plan for the Year 2021-22 Consumable List 1 Chemicals, Rare Chemicals, Reagents & Solvents Sl. No. Generic Name Specification Quantity Approx Cost (Rs.) 1. HEPES Molecular biology 1kg 80000/‐ grade 2. MES hydrate Molecular biology 1kg 34000/‐ grade 3. Imidazole Molecular biology 1kg 28000/‐ grade 4. BIS‐TRIS Molecular biology 500g 44000/‐ grade 5. Agarose Type I Molecular biology 1kg 11900/‐ grade 6. CAPS Molecular biology 100g 8000/‐ grade 7. Trizma Base Molecular biology 1kg 31000/‐ grade 8. Glycerol Molecular biology 2.5L*4 8000/‐ grade 9. Ethanol Molecular biology 500ml*10 8000/‐ grade 10. NaCl Molecular biology 1kg 6000/‐ grade 11. Tris Buffer Molecular biology 1 kg 10000/‐ grade 12. Ethyl acetate Molecular biology 500ml*5 6500/‐ grade 13. Acetic acid 25L 11000/‐ 14. Methanol 25L 8000/‐ 15. Urea Molecular biology 1kg 2000/‐ grade 16. Agar Powder, Bacteriological 500g 8000/‐ 17. Trizma Hydrochloride Molecular biology 1kg 15000/‐ grade 18. Acrylamide Molecular biology 500g 4000/‐ grade 19. Phenol Molecular biology 500ml 5000/‐ grade 20. Luria Bertani Broth 2.5kg * 4 90,000 21. Acetone 2.5L 1500/‐ 22. Ni‐NTA beads 100ml 57000/‐ 23. Ammonium persulphate Molecular biology 100g 2000/‐ grade 24. Ampicillin Sodium Molecular biology 100 g 13000/‐ grade 25. Kanaymycin Monosulfate Molecular biology 100g 60000/‐ grade 26. Choramphenicol Molecular biology 100g 40000/‐ grade 27. Isopropyl β‐ d‐1‐thiogalactopyranoside Molecular biology 100g 35000/‐ grade 28. Coomassie Brilliant Blue R‐250 Molecular biology 25g 10,000/‐ grade 29. SDS Molecular biology 100g 2500/‐ grade 30. Isopropanol 25 L 15000/‐ 31. Crystallization screen JCSG‐Plus 1 unit/box 50000/‐ 32. -
Synthetic Routes to Bromo-Terminated Phosphonate Films and Alkynyl Pyridine Compounds for Click Coupling
University of Mary Washington Eagle Scholar Student Research Submissions Spring 5-7-2018 Synthetic Routes to Bromo-Terminated Phosphonate Films and Alkynyl Pyridine Compounds for Click Coupling Poornima Sunder Follow this and additional works at: https://scholar.umw.edu/student_research Part of the Biochemistry Commons Recommended Citation Sunder, Poornima, "Synthetic Routes to Bromo-Terminated Phosphonate Films and Alkynyl Pyridine Compounds for Click Coupling" (2018). Student Research Submissions. 226. https://scholar.umw.edu/student_research/226 This Honors Project is brought to you for free and open access by Eagle Scholar. It has been accepted for inclusion in Student Research Submissions by an authorized administrator of Eagle Scholar. For more information, please contact [email protected]. Synthetic Routes to Bromo-Terminated Phosphonate Films and Alkynyl Pyridine Compounds for Click Coupling Poornima Rachel Sunder Thesis submitted to the faculty of University of Mary Washington in partial fulfillment of the requirements for graduation with Honors in Chemistry (2018) ABSTRACT Click reactions are a highly versatile class of reactions that produce a diverse range of products. Copper-catalyzed azide-alkyne cycloaddition (CuAAC) click reactions require an azide and a terminal alkyne and produce a coupled product that is “clicked” through a triazole ring that can have a variety of substituents. In this work, bromo-terminated phosphonate films on copper oxide surfaces were explored as the platform for click coupling, as the terminal azide needed for the reaction can be generated through an in situ SN2 reaction with a terminal bromo group. The reactions were characterized using model reactions in solution before being conducted on modified copper oxide surfaces. -
Contemporary Organosilicon Chemistry
Contemporary organosilicon chemistry Edited by Steve Marsden Generated on 05 October 2021, 02:13 Imprint Beilstein Journal of Organic Chemistry www.bjoc.org ISSN 1860-5397 Email: [email protected] The Beilstein Journal of Organic Chemistry is published by the Beilstein-Institut zur Förderung der Chemischen Wissenschaften. This thematic issue, published in the Beilstein Beilstein-Institut zur Förderung der Journal of Organic Chemistry, is copyright the Chemischen Wissenschaften Beilstein-Institut zur Förderung der Chemischen Trakehner Straße 7–9 Wissenschaften. The copyright of the individual 60487 Frankfurt am Main articles in this document is the property of their Germany respective authors, subject to a Creative www.beilstein-institut.de Commons Attribution (CC-BY) license. Contemporary organosilicon chemistry Steve Marsden Editorial Open Access Address: Beilstein Journal of Organic Chemistry 2007, 3, No. 4. School of Chemistry, University of Leeds, Leeds LS2 9JT, UK doi:10.1186/1860-5397-3-4 Email: Received: 06 February 2007 Steve Marsden - [email protected] Accepted: 08 February 2007 Published: 08 February 2007 © 2007 Marsden; licensee Beilstein-Institut License and terms: see end of document. Abstract Editorial for the Thematic Series on Contemporary Organosilicon Chemistry. The field of organosilicon chemistry has a rich and varied the 1990s, and equivalent to the number appearing in the much history, and has long since made the progression from chemical longer established field of organoboron chemistry -
Chapter 7, Haloalkanes, Properties and Substitution Reactions of Haloalkanes Table of Contents 1
Chapter 7, Haloalkanes, Properties and Substitution Reactions of Haloalkanes Table of Contents 1. Alkyl Halides (Haloalkane) 2. Nucleophilic Substitution Reactions (SNX, X=1 or 2) 3. Nucleophiles (Acid-Base Chemistry, pka) 4. Leaving Groups (Acid-Base Chemistry, pka) 5. Kinetics of a Nucleophilic Substitution Reaction: An SN2 Reaction 6. A Mechanism for the SN2 Reaction 7. The Stereochemistry of SN2 Reactions 8. A Mechanism for the SN1 Reaction 9. Carbocations, SN1, E1 10. Stereochemistry of SN1 Reactions 11. Factors Affecting the Rates of SN1 and SN2 Reactions 12. --Eliminations, E1 and E2 13. E2 and E1 mechanisms and product predictions In this chapter we will consider: What groups can be replaced (i.e., substituted) or eliminated The various mechanisms by which such processes occur The conditions that can promote such reactions Alkyl Halides (Haloalkane) An alkyl halide has a halogen atom bonded to an sp3-hybridized (tetrahedral) carbon atom The carbon–chlorine and carbon– bromine bonds are polarized because the halogen is more electronegative than carbon The carbon-iodine bond do not have a per- manent dipole, the bond is easily polarizable Iodine is a good leaving group due to its polarizability, i.e. its ability to stabilize a charge due to its large atomic size Generally, a carbon-halogen bond is polar with a partial positive () charge on the carbon and partial negative () charge on the halogen C X X = Cl, Br, I Different Types of Organic Halides Alkyl halides (haloalkanes) sp3-hybridized Attached to Attached to Attached -
Chemistry 0310 - Organic Chemistry 1 Chapter 6
Dr. Peter Wipf Chemistry 0310 - Organic Chemistry 1 Chapter 6. SN2 Reactions Nucleophilic substitution reactions occur when nucleophiles (electron-rich species) displace leaving groups on electrophiles (electron-poor species). The net result is the substitution of one group for another bonded to a carbon atom. Nucleophilicity is increased by a negative charge and an increase in the polarizability. The greater the size and the lower the electronegativity of an atom, the greater its polarizability. Leaving groups are stable species that can be detached with their bonding electrons from a molecule during reaction. Most good leaving groups are the conjugate bases of strong acids. Sulfonates (mesylates, tosylates, triflates, etc.) are popular leaving groups since they can be readily obtained from alcohols. Solvents also influence nucleophilicity. SN2 reactions are second-order reactions whose rates depend o the concentration of both the alkyl halide and the nucleophile. The transition state of the one-step SN2 process involves a trigonal bipyramidal carbon and results in an overall inversion of configuration. The order of reactivity of alkyl halides and alkyl sulfonates in SN2 reactions is CH3>1°>2°>3°. The activation energy, DG‡, determines the rate of a reaction: k = koexp(-DG‡/RT). The overall change in free energy, DG, determines the position of the thermodynamic equilibrium. A positive sign of DG is characteristic for an endergonic reaction, a negative DG is found for an exergonic process. The rate of a reaction can be measured and provides information about its mechanism. The reaction order is the sum of the exponents in the rate equation. Relative Leaving Group Abilities: Leaving Group Common Name krel AcO acetate 1 x 10-10 Cl chloride 0.0001 Br bromide 0.001 I iodide 0.01 O mesylate 1.00 H3C S O O O tosylate 0.70 H3C S O O O brosylate 2.62 Br S O O O nosylate 13 O2N S O O O fluorosulfate 29,000 F S O O O triflate 56,000 CF3 S O O O nonaflate 120,000 C4F9 S O O. -
INDEX to PESTICIDE TYPES and FAMILIES and PART 180 TOLERANCE INFORMATION of PESTICIDE CHEMICALS in FOOD and FEED COMMODITIES
US Environmental Protection Agency Office of Pesticide Programs INDEX to PESTICIDE TYPES and FAMILIES and PART 180 TOLERANCE INFORMATION of PESTICIDE CHEMICALS in FOOD and FEED COMMODITIES Note: Pesticide tolerance information is updated in the Code of Federal Regulations on a weekly basis. EPA plans to update these indexes biannually. These indexes are current as of the date indicated in the pdf file. For the latest information on pesticide tolerances, please check the electronic Code of Federal Regulations (eCFR) at http://www.access.gpo.gov/nara/cfr/waisidx_07/40cfrv23_07.html 1 40 CFR Type Family Common name CAS Number PC code 180.163 Acaricide bridged diphenyl Dicofol (1,1-Bis(chlorophenyl)-2,2,2-trichloroethanol) 115-32-2 10501 180.198 Acaricide phosphonate Trichlorfon 52-68-6 57901 180.259 Acaricide sulfite ester Propargite 2312-35-8 97601 180.446 Acaricide tetrazine Clofentezine 74115-24-5 125501 180.448 Acaricide thiazolidine Hexythiazox 78587-05-0 128849 180.517 Acaricide phenylpyrazole Fipronil 120068-37-3 129121 180.566 Acaricide pyrazole Fenpyroximate 134098-61-6 129131 180.572 Acaricide carbazate Bifenazate 149877-41-8 586 180.593 Acaricide unclassified Etoxazole 153233-91-1 107091 180.599 Acaricide unclassified Acequinocyl 57960-19-7 6329 180.341 Acaricide, fungicide dinitrophenol Dinocap (2, 4-Dinitro-6-octylphenyl crotonate and 2,6-dinitro-4- 39300-45-3 36001 octylphenyl crotonate} 180.111 Acaricide, insecticide organophosphorus Malathion 121-75-5 57701 180.182 Acaricide, insecticide cyclodiene Endosulfan 115-29-7 79401 -
United States Patent Office Patented Apr
3,803,252 United States Patent Office Patented Apr. 9, 1974 1. 2 3,803,252 in which R is as hereinbefore defined and Y represents PROCESS FOR THE PREPARATION OF CAROTENOD COMPOUNDS a hydrogen atom or a retinyl radical. This formula may Pierre Chabardes, Lyon, and Marc Julia, Paris, France, represent sterically pure products, or mixtures of differ assignors to Rhone-Poulenc S.A., Paris, France ent isomers. 5 The unsubstituted sulphones used as starting mate No Drawing. Filed May 17, 1972, Ser. No. 254,103 rials have the Formula I in which Y represents a hy Claims priority, applicitFrance, May 19, 1971, drogen atom; they are called herein retinyl-Sulphones. Int, C. C07c9 13/00 They can be prepared by known methods for the prep U.S. C. 260-666 C 9 Claims aration of sulphones. A particularly advantageous method O consists of reacting an alkali metal sulphinate of the formula RSOM, in which R represents alkyl, aryl, alkyl ABSTRACT OF THE DISCLOSURE aryl or aralkyl, preferably phenyl or tolyl, and M rep Caroteine compounds e.g. g-caroteine, are prepared by resents an alkali metal, with retinol or a retinol ester reacting a sulphone Ret-SO-R, in which Ret repre of an inorganic or organic acid, such as retinyl chloride sents retinyl or substituted retinyl and R represents a 15 or bromide, or retinyl formate or acetate. They can also hydrocarbon radical, in the presence of an alkaline be prepared by reacting a sulphinic acid RSOH with reagent with an ester Ret-X, in which X represents an retinol, it being possible to form this acid in situ, if re acid residue, and then desulphonating the product, for quired, from a metal sulphinate in an acid medium. -
Leaving Group of Substrate Important
1 Recap... • Last two lectures we looked at substitution reactions • We found that there we two (extreme) mechanisms • SN1 H H H H H PhS R H R Br R SPh Br • And SN2 H H H H PhS + Br R Br PhS R • We looked at many of the factors that influenced which ..mechanism was operating... • Now we will turn our attention to elimination reactions 2 Elimination reactions NaOH NaOH or low Br H2O OH concentration • You have seen SN1 substitution • Reaction not sped up by altering nucleophile - it is not in RDS • In fact if we increase the amount / concentration of nucleophile we get the following... high O H + + + Br Br OH concentration H H • We observe an elimination reaction • Overall HBr is lost from the molecule • Isn't chemistry fun - these are the same conditions as substitution! • Next two lectures will look at the mechanisms for elimination • And how we control the nature of the reaction we observe... 3 Elimination, bimolecular E2 O H Br HO Br H H • E2 - Elimination bimolecular or 2nd order reaction • 2 molecules in the RDS or transition state H H H H H C H C H H C Br Br H O H C H O H C C H H H H C H C H H H • Two molecules in the rate determining step • So both the base and the substrate control the reaction • Both carbon skeleton & leaving group of substrate important In substitutions nucleophile acts as a nucleophile & attacks carbon In eliminations nucleophile acts as a base & attacks proton 4 Elimination, bimolecular E2: MO • Little confusing as need bonding & anti-bonding in same diagram! • Orbitals need to be parallel for maximum overlap -
Classifying Halogenoalkanes Reactions Of
10 Halogenoalkanes H Naming Halogenoalkanes H H H H C H H H H Based on original alkane, with a prefix indicating halogen atom: H C C C H Fluoro for F; Chloro for Cl; Bromo for Br; Iodo for I. H C C C C H Br H H H Cl H H Substituents are listed alphabetically 1-bromopropane 2-chloro-2-methylbutane Classifying Halogenoalkanes Halogenoalkanes can be classified as primary, secondary or tertiary depending on the number of carbon atoms attached to the C-X functional group. H H H H H H H H C H H H H H C C C H H C C C H H C C C C H Br H H H Br H H Cl H H Primary halogenoalkane Secondary halogenoalkane Tertiary halogenoalkane One carbon attached to the Two carbons attached to the Three carbons attached to the carbon atom adjoining the carbon atom adjoining the carbon atom adjoining the halogen halogen halogen Reactions of Halogenoalkanes Halogenoalkanes undergo either substitution or elimination reactions Nucleophilic substitution reactions Substitution: swapping a halogen atom for another atom or groups of atoms - - Nucleophile: electron pair donator e.g. :OH , :NH3, CN :Nu represents any nucleophile – they The Mechanism: We draw (or outline) mechanisms to always have a lone pair and act as show in detail how a reaction proceeds electron pair donators Nu:- The nucleophiles The carbon has a small attack the positive H H H H positive charge because carbon atom of the electronegativity H C C X H C C + X- δ+ δ- Nu difference between the carbon and the halogen H H H H We use curly arrows in mechanisms (with A curly arrow will always two line heads) to show the movement of start from a of electrons or two electrons lone pair the centre of a bond The rate of these substitution reactions depends on the strength Bond enthalpy / of the C-X bond kJmol-1 The weaker the bond, the easier it is to break and the faster the reaction. -
Carbonyl Chemistry I: Additions to Carbonyl Groups
Paul Bracher Chem 30 – Section 4 Carbonyl Chemistry I: Additions to Carbonyl Groups Section Agenda 1) Lessons from Exam I, Course Feedbeck Mechanism on Web Site 2) Carbonyl Groups: Structure, Bonding, Molecular Orbitals, Geometry, Reactivity 3) Handout: In-Section Problem Set 4) Handout: In-Section Solution Set 5) Weekly Office Hours: Thursday, 3-4PM and 8-9PM, in Bauer Lobby Structure and Bonding · Carbonyl carbons are roughly sp2 hybridized Molecular Orbital Picture and planar with bond angles near 120 degrees bonding p orbital antibonding p* orbital · The C=O p bond is formed by the overlap of two unhybridized p orbitals. The bond is polarized due to the different electronegativities of carbon and oxygen. 105 o Resonance Model O O Bürgi-Dunitz angle · Another way to picture carbonyl groups is I II through an MO picture. Since the coefficient of · Resonance form II suggests that the carbon pO’s contribution is greater in pC=O, then atom is surrounded by less negative charge conservation of blending atomic orbitals into density than oxygen, rendering the carbon more molecular orbitals tells you that pC must be a electrophilic. larger contributor to the p*C=O orbital. · When reagents add to carbonyl double bonds, · The larger coefficient on oxygen in the filled the nucleophile attacks the carbon atom. orbital explains why the oxygen atom behaves as a Lewis base (it commonly complexes with · Due to the increased negative charge density Lewis acids). The larger coefficient on carbon on oxygen, Lewis acids (such as protons) in the empty antibonding orbital explains why it commonly complex with oxygen. -
Chemical Chemical Hazard and Compatibility Information
Chemical Chemical Hazard and Compatibility Information Acetic Acid HAZARDS & STORAGE: Corrosive and combustible liquid. Serious health hazard. Reacts with oxidizing and alkali materials. Keep above freezing point (62 degrees F) to avoid rupture of carboys and glass containers.. INCOMPATIBILITIES: 2-amino-ethanol, Acetaldehyde, Acetic anhydride, Acids, Alcohol, Amines, 2-Amino-ethanol, Ammonia, Ammonium nitrate, 5-Azidotetrazole, Bases, Bromine pentafluoride, Caustics (strong), Chlorosulfonic acid, Chromic Acid, Chromium trioxide, Chlorine trifluoride, Ethylene imine, Ethylene glycol, Ethylene diamine, Hydrogen cyanide, Hydrogen peroxide, Hydrogen sulfide, Hydroxyl compounds, Ketones, Nitric Acid, Oleum, Oxidizers (strong), P(OCN)3, Perchloric acid, Permanganates, Peroxides, Phenols, Phosphorus isocyanate, Phosphorus trichloride, Potassium hydroxide, Potassium permanganate, Potassium-tert-butoxide, Sodium hydroxide, Sodium peroxide, Sulfuric acid, n-Xylene. Acetone HAZARDS & STORAGE: Store in a cool, dry, well ventilated place. INCOMPATIBILITIES: Acids, Bromine trifluoride, Bromine, Bromoform, Carbon, Chloroform, Chromium oxide, Chromium trioxide, Chromyl chloride, Dioxygen difluoride, Fluorine oxide, Hydrogen peroxide, 2-Methyl-1,2-butadiene, NaOBr, Nitric acid, Nitrosyl chloride, Nitrosyl perchlorate, Nitryl perchlorate, NOCl, Oxidizing materials, Permonosulfuric acid, Peroxomonosulfuric acid, Potassium-tert-butoxide, Sulfur dichloride, Sulfuric acid, thio-Diglycol, Thiotrithiazyl perchlorate, Trichloromelamine, 2,4,6-Trichloro-1,3,5-triazine