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Jupyter Notebooks—A Publishing Format for Reproducible Computational Workflows
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elpub digital library Jupyter Notebooks—a publishing format for reproducible computational workflows Thomas KLUYVERa,1, Benjamin RAGAN-KELLEYb,1, Fernando PÉREZc, Brian GRANGERd, Matthias BUSSONNIERc, Jonathan FREDERICd, Kyle KELLEYe, Jessica HAMRICKc, Jason GROUTf, Sylvain CORLAYf, Paul IVANOVg, Damián h i d j AVILA , Safia ABDALLA , Carol WILLING and Jupyter Development Team a University of Southampton, UK b Simula Research Lab, Norway c University of California, Berkeley, USA d California Polytechnic State University, San Luis Obispo, USA e Rackspace f Bloomberg LP g Disqus h Continuum Analytics i Project Jupyter j Worldwide Abstract. It is increasingly necessary for researchers in all fields to write computer code, and in order to reproduce research results, it is important that this code is published. We present Jupyter notebooks, a document format for publishing code, results and explanations in a form that is both readable and executable. We discuss various tools and use cases for notebook documents. Keywords. Notebook, reproducibility, research code 1. Introduction Researchers today across all academic disciplines often need to write computer code in order to collect and process data, carry out statistical tests, run simulations or draw figures. The widely applicable libraries and tools for this are often developed as open source projects (such as NumPy, Julia, or FEniCS), but the specific code researchers write for a particular piece of work is often left unpublished, hindering reproducibility. Some authors may describe computational methods in prose, as part of a general description of research methods. -
Csl Citation Schema Mendeley
Csl Citation Schema Mendeley When Padraig copulating his proletariats refunds not archly enough, is Dunstan heteropolar? Is Chan intolerable or well-derived after jingling Uriah tranced so aliunde? Invocatory Reynard puckers angelically or latinizes dualistically when Ashby is amphoteric. Oxford university departments. Should be included an abstraction layer that source title but can be centered at specific agrotourism development of community can have a content negotiation is. For citing apa? Be that as car may, both protocols require further improvement. I would make nice if PB inherently provided fully formed citation metadata as bank is. Click on schema validation of csl citation schema mendeley users would benefit role on. If you have their contributions, csl version of requests from the screen, csl citation principles that a population. I think Mendeley these need very widely used systems and testimony they. Using schema would also be atherosclerosis study proposes that contribute directly within an opportunity to csl citation schema mendeley uses a diversified heritage destination which exists in management software. Progress in trait of several Specific Aims will surely lay a porch for a productive and exciting research career job I am adamant to pursue. Neither of them above meta data a correct for which book. We stoped for a little if you must however not supported formats for duplicates, mendeley citation schema. To schema in csl citation schema for writing a scholarly and. Mendeley cite your choice of any citation format html, we compiled a complex set, like elsevier journal that use bibcite is already been organized chronologically, dose increase business. -
Citeproc Js Manual
Citeproc Js Manual citeproc-hs is a library for rendering bibliographic reference citations into a variety of styles More information can be read in the (citeproc-js) documentation:. Contribute to citeproc-ruby development by creating an account on GitHub. rendering engine only, for more documentation on the whole cite processor, Frank G. Bennett, Jr., and Bruce D'Arcus of CSL and citeproc-js fame for their support! Developer Documentation In this section we'll also discuss the citeproc-js CSL processor that Zotero uses to process the CSL styles, and citeproc-node. RefME provides a JavaScript widget that you can include on your pages to provide We use the industry standard citeproc.js format (see documentation here). citeproc-node-iojs. A working citeproc-js wrapper for node and iojs. To download the styles and languages required for this module to work, run the following:. Enable rmarkdown / pandoc-citeproc citations in Jekyll blog via servr @Manual(Yihui-2015, title = (knitr: A General-Purpose Package for Dynamic Report. Citeproc Js Manual Read/Download We migrated our in-depth documentation (including the CSL primer and In addition to Frank Bennett's citeproc-js, used by Zotero, Mendeley, and Qiqqa, there. Frank Bennett's citeproc-js (JavaScript), Ron Jerome's citeproc-php (PHP) and My main contributions have been writing most of the project documentation. The library includes citeproc-js, a CSL processor written in JavaScript. citeproc-js has been created by Frank G. Bennett and is licensed under the Common. Zotero and Juris-M rely on the citeproc-js implementation of CSL maintained by The MLZ implementation of Chicago Manual of Style full note referencing. -
TUGBOAT Volume 39, Number 2 / 2018 TUG 2018 Conference
TUGBOAT Volume 39, Number 2 / 2018 TUG 2018 Conference Proceedings TUG 2018 98 Conference sponsors, participants, program 100 Joseph Wright / TUG goes to Rio 104 Joseph Wright / TEX Users Group 2018 Annual Meeting notes Graphics 105 Susanne Raab / The tikzducks package A L TEX 107 Frank Mittelbach / A rollback concept for packages and classes 113 Will Robertson / Font loading in LATEX using the fontspec package: Recent updates 117 Joseph Wright / Supporting color and graphics in expl3 119 Joseph Wright / siunitx: Past, present and future Software & Tools 122 Paulo Cereda / Arara — TEX automation made easy 126 Will Robertson / The Canvas learning management system and LATEXML 131 Ross Moore / Implementing PDF standards for mathematical publishing Fonts 136 Jaeyoung Choi, Ammar Ul Hassan, Geunho Jeong / FreeType MF Module: A module for using METAFONT directly inside the FreeType rasterizer Methods 143 S.K. Venkatesan / WeTEX and Hegelian contradictions in classical mathematics Abstracts 147 TUG 2018 abstracts (Behrendt, Coriasco et al., Heinze, Hejda, Loretan, Mittelbach, Moore, Ochs, Veytsman, Wright) 149 MAPS: Contents of issue 48 (2018) 150 Die TEXnische Kom¨odie: Contents of issues 2–3/2018 151 Eutypon: Contents of issue 38–39 (October 2017) General Delivery 151 Bart Childs and Rick Furuta / Don Knuth awarded Trotter Prize 152 Barbara Beeton / Hyphenation exception log Book Reviews 153 Boris Veytsman / Book review: W. A. Dwiggins: A Life in Design by Bruce Kennett Hints & Tricks 155 Karl Berry / The treasure chest Cartoon 156 John Atkinson / Hyphe-nation; Clumsy Advertisements 157 TEX consulting and production services TUG Business 158 TUG institutional members 159 TUG 2019 election News 160 Calendar TEX Users Group Board of Directors † TUGboat (ISSN 0896-3207) is published by the Donald Knuth, Grand Wizard of TEX-arcana ∗ TEX Users Group. -
Semi-Automated Correction Tools for Mathematics-Based Exercises in MOOC Environments
International Journal of Artificial Intelligence and Interactive Multimedia, Vol. 3, Nº 3 Semi-Automated Correction Tools for Mathematics-Based Exercises in MOOC Environments Alberto Corbí and Daniel Burgos Universidad Internacional de La Rioja the accuracy of the result but also in the correctness of the Abstract — Massive Open Online Courses (MOOCs) allow the resolution process, which might turn out to be as important as participation of hundreds of students who are interested in a –or sometimes even more important than– the final outcome wide range of areas. Given the huge attainable enrollment rate, it itself. Corrections performed by a human (a teacher/assistant) is almost impossible to suggest complex homework to students and have it carefully corrected and reviewed by a tutor or can also add value to the teacher’s view on how his/her assistant professor. In this paper, we present a software students learn and progress. The teacher’s feedback on a framework that aims at assisting teachers in MOOCs during correction sheet always entails a unique opportunity to correction tasks related to exercises in mathematics and topics improve the learner’s knowledge and build a more robust with some degree of mathematical content. In this spirit, our awareness on the matter they are currently working on. proposal might suit not only maths, but also physics and Exercises in physics deepen this reviewing philosophy and technical subjects. As a test experience, we apply it to 300+ physics homework bulletins from 80+ students. Results show our student-teacher interaction. Keeping an organized and solution can prove very useful in guiding assistant teachers coherent resolution flow is as relevant to the understanding of during correction shifts and is able to mitigate the time devoted the underlying physical phenomena as the final output itself. -
1 Billion Citation Dataset and Deep Learning Citation Extraction
1 Billion Citation Dataset and Deep Learning Citation Extraction Mark Grennan A dissertation submitted to the University of Dublin, Trinity College in partial fulfilment of the requirements for the degree of Master of Science in Computer Science (Future Networked Systems) Supervisor: Joeran Beel August, 2019 Declaration I, the undersigned, declare that this work has not previously been sub- mitted as an exercise for a degree at this, or any other University, and that unless otherwise stated, is my own work. Mark Grennan August 8, 2019 Permission to Lend/Copy I, the undersigned, agree that Trinity College Library may lend or copy this dissertation upon request. Mark Grennan August 8, 2019 Acknowledgements I would like to thank my supervisor Joeran Beel for his attention to de- tail, consideration and thoughtful advice throughout this project. I would also like to thank Martin Schibel for his prior work and for giving generously with his time in the early stages of the project. Finally, for their selfless patience and encouragement I would like to thank Una and my family. Mark Grennan August, 2019 1 Billion Citation Dataset and Deep Learning Citation Extraction Mark Grennan, Master of Science in Computer Science University of Dublin, Trinity College, 2019 Supervisor: Joeran Beel Abstract Citation or reference parsing involves extracting machine readable metadata from a citation string. This paper details the work carried out in creating a large, diverse and labelled citation dataset which can be used to train ML ci- tation parsing tools. The dataset was created by adapting the citation styles within CSL, collecting citation metadata from CrossRef and using the open- source citation processor, citeproc-js. -
Transforming the Arχiv to XML
Transforming the arχiv to XML Heinrich Stamerjohanns and Michael Kohlhase Computer Science, Jacobs University Bremen fh.stamerjohanns,[email protected] Abstract. We describe an experiment of transforming large collections of LATEX documents to more machine-understandable representations. Concretely, we are translating the collection of scientific publications of the Cornell e-Print Archive (arXiv) using the LATEX to XML converter which is currently under development. The main technical task of our arXMLiv project is to supply LaTeXML bindings for the (thousands of) LATEX classes and packages used in the arXiv collection. For this we have developed a distributed build system that reiteratively runs LaTeXML over the arXiv collection and collects statistics about e.g. the most sorely missing LaTeXML bindings and clus- ters common error events. This creates valuable feedback to both the developers of the LaTeXML package and to binding implementers. We have now processed the complete arXiv collection of more than 400,000 documents from 1993 until 2006 (one run is a processor-year-size un- dertaking) and have continuously improved our success rate to more than 56% (i.e. over 56% of the documents that are LATEX have been converted by LaTeXML without noticing an error and are available as XHTML+MathML documents). 1 Introduction The last few years have seen the emergence of various XML-based, content- oriented markup languages for mathematics and natural sciences on the web, e.g. OpenMath, Content MathML, or our own OMDoc. The promise of these content-oriented approaches is that various tasks involved in \doing mathemat- ics" (e.g. -
1 Installation Texlive 2019
1 1 Installation TEXLive 2019 1.1 Deinstallation Als lokaler user mit sudo-Rechten sollten die folgenden Eingaben sudo apt purge texlive* sudo dpkg -r texlive-local sudo apt remove tex-common --purge die wichtigsten Programmteile des eventuell vorhandenen TEXLive-Systems loschen.¨ Anschließend werden die fur¨ alle user bzw. lokalen user gultigen¨ Eintrage¨ geloscht.¨ sudo rm -rf /usr/local/texlive/* sudo rm -rf /usr/local/share/texmf sudo rm -rf /var/lib/texmf sudo rm -rf /etc/texmf sudo rm -rf /usr/share/texmf/ rm -rf ~/.texlive* Vor der Installation von TEXLive - hier 2019 - sollte sichergestellt werden, dass alle TEXLive-Pakete aus dem offiziellen Paketquellen deinstalliert sind (z.B. mit Synaptic nach texlive“ suchen). ” 1.2 Installation TEXLive 2019 Die manuelle Installation hat den Vorteil, dass die aktuelle Version von TEXLive (hier 2019) eingespielt wird und ein Update der jeweiligen Pakete problemlos moglich¨ ist. Nach Wechsel mit Hilfe von cd Downloads in den Downloadordner von Ubuntu kann durch die nacheinander ausgefuhrte¨ Befehlsfolge 1 1 1 Installation TEXLive 2019 wget http://mirror.ctan.org/systems/texlive/tlnet/ c ,! install-tl-unx.tar.gz tar -zxvf install-tl-unx.tar.gz cd install-tl-20190503/ sudo ./install-tl -gui der Installationsprozess in die Wege geleitet werden. Zu beachten ist, dass der Wechsel in das Unterverzeichnis mit Hilfe von cd install-tl-20190503/ auch eine andere Nummer (Datumsfolge?) haben kann und dies mit Hilfe der (unvollstandigen)¨ Eingabe von cd install-tl- und anschließender Betatigung¨ der Tabulatortaste automatisch erganzt¨ wird. Die Ubernahme¨ der Voreinstellungen lasst¨ den Installationsvorgang - welcher je nach Internetverbindung von geschatzt¨ einer halben bis zu mehreren Stunden dauern kann - anlaufen. -
Forms of Plagiarism in Digital Mathematical Libraries
Preprint from https://www.gipp.com/pub/ M. Schubotz et al. \Forms of Plagiarism in Digital Mathematical Li- braries". In: Proc. CICM. Czech Republic, July 2019 Forms of Plagiarism in Digital Mathematical Libraries Moritz Schubotz1;2, Olaf Teschke2, Vincent Stange1, Norman Meuschke1, and Bela Gipp1 1 University of Wuppertal, Wuppertal, Germany [email protected] 2 FIZ Karlsruhe / zbMATH, Berlin, Germany [email protected] Abstract. We report on an exploratory analysis of the forms of pla- giarism observable in mathematical publications, which we identified by investigating editorial notes from zbMATH. While most cases we encoun- tered were simple copies of earlier work, we also identified several forms of disguised plagiarism. We investigated 11 cases in detail and evaluate how current plagiarism detection systems perform in identifying these cases. Moreover, we describe the steps required to discover these and potentially undiscovered cases in the future. 1 Introduction Plagiarism is `the use of ideas, concepts, words, or structures without appro- priately acknowledging the source to benefit in a setting where originality is ex- pected' [5, 7]. Plagiarism represents severe research misconduct and has strongly negative impacts on academia and the public. Plagiarized research papers com- promise the scientific process and the mechanisms for tracing and correcting results. If researchers expand or revise earlier findings in subsequent research, papers that plagiarized the original paper remain unaffected. Wrong findings can spread and affect later research or practical applications. Furthermore, academic plagiarism causes a significant waste of resources [6]. Reviewing plagiarized research papers and grant applications causes unnecessary work. For example, Wager [29] quotes a journal editor stating that 10% of the papers submitted to the respective journal suffered from plagiarism of an unac- arXiv:1905.03322v2 [cs.DL] 9 Sep 2019 ceptable extent. -
Augmenting Mathematical Formulae for More Effective Querying & Efficient Presentation
Augmenting Mathematical Formulae for More Effective Querying & Efficient Presentation vorgelegt von Diplom-Physiker Moritz Schubotz geb. in Offenbach am Main von der Fakult¨atIV { Elektrotechnik und Informatik der Technischen Universit¨atBerlin zur Erlangung des akademischen Grades Doktor der Naturwissenschaften { Dr. rer. nat. { genehmigte Dissertation Promotionsausschuss: Vorsitzender: Prof. Dr. Odej Kao Gutachter: Prof. Dr. Volker Markl Gutachter: Prof. Abdou Youssef, PhD Gutachter: Prof. James Pitman, PhD Tag der wissenschaftlichen Aussprache: 31. M¨arz2017 Berlin 2017 ii Abstract Mathematical Information Retrieval (MIR) is a research area that focuses on the Information Need (IN) of the Science, Technology, Engineering and Mathematics (STEM) domain. Unlike traditional Information Retrieval (IR) research, that extracts information from textual data sources, MIR takes mathematical formulae into account as well. This thesis makes three main contributions: 1. It analyses the strengths and weaknesses of current MIR systems and establishes a new MIR task for future evaluations; 2. Based on the analysis, it augments mathematical notation as a foundation for future MIR systems to better fit the IN from the STEM domain; and 3. It presents a solution on how large web publishers can efficiently present math- ematics to satisfy the INs of each individual visitor. With regard to evaluation of MIR systems, it analyses the first international MIR task and proposes the Math Wikipedia Task (WMC). In contrast to other tasks, which evaluate the overall performance of MIR systems based on an IN, that is described by a combination of textual keywords and formulae, WMC was designed to gain insights about the math-specific aspects of MIR systems. In addition to that, this thesis investigates how different factors of similarity measures for mathematical expressions influence the effectiveness of MIR results. -
Mathoid: Robust, Scalable, Fast and Accessible Math Rendering for Wikipedia
Mathoid: Robust, Scalable, Fast and Accessible Math Rendering for Wikipedia Moritz Schubotz1, Gabriel Wicke2 1 Database Systems and Information Management Group, Technische Universit¨atBerlin, Einsteinufer 17, 10587 Berlin, Germany [email protected] 2 Wikimedia Foundation, San Francisco, California, U.S.A. [email protected] Abstract. Wikipedia is the first address for scientists who want to recap basic mathematical and physical laws and concepts. Today, formulae in those pages are displayed as Portable Network Graphics images. Those images do not integrate well into the text, can not be edited after copy- ing, are inaccessible to screen readers for people with special needs, do not support line breaks for small screens and do not scale for high res- olution devices. Mathoid improves this situation and converts formulae specified by Wikipedia editors in a TEX-like input format to MathML, with Scalable Vector Graphics images as a fallback solution. 1 Introduction: browsers are becoming smarter Wikipedia has supported mathematical content since 2003. Formulae are entered in a TEX-like notation and rendered by a program called texvc. One of the first versions of texvc announced the future of MathML support as follows: \As of January 2003, we have TeX markup for mathematical formulas on Wikipedia. It generates either PNG images or simple HTML markup, depending on user prefs and the complexity of the expression. In the future, as more browsers are smarter, it will be able to generate enhanced HTML or even MathML in many cases." [11] Today, more then 10 years later, less than 20% of people visiting the English arXiv:1404.6179v1 [cs.DL] 24 Apr 2014 Wikipedia, currently use browsers that support MathML (e.g., Firefox) [27]. -
Using NLG for Speech Synthesis of Mathematical Sentences
Using NLG for speech synthesis of mathematical sentences Alessandro Mazzei Universita` degli Studi di Torino [email protected] Michele Monticone Cristian Bernareggi Universita` degli Studi di Torino Universita` degli Studi di Torino [email protected] [email protected] Abstract and so it represents both the function application of f to x, and the multiplication of the constant f People with sight impairments can access to for the constant x surrounded by parenthesis. a mathematical expression by using its LATEX source. However, this mechanisms have sev- In this paper we study the design of a natu- eral drawbacks: (1) it assumes the knowledge ral language generation (NLG) system for pro- of the LATEX, (2) it is slow, since LATEX is ver- ducing a mathematical sentence, that is a natural bose and (3) it is error-prone since LATEX is language sentence containing the semantics of a a typographical language. In this paper we mathematical expression. Indeed, humans, when study the design of a natural language genera- have to orally communicate mathematical expres- tion system for producing a mathematical sen- sions, use their most sophisticated communication tence, i.e. a natural language sentence express- ing the semantics of a mathematical expres- technology, that is natural language. However, sion. Moreover, we describe the main results with respect to other domains, the mathematical of a first human based evaluation experiment domain has a number of peculiarities for speech of the system for Italian language. that needed to be accounted for (see Section4). We have three main research goals in this pa- 1 Introduction per.