Predator-Prey Interactions Between the Ciliate Blepharisma Americanum
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Molecular Data and the Evolutionary History of Dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Un
Molecular data and the evolutionary history of dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Universitat Heidelberg, 1993 A THESIS SUBMITTED IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES Department of Botany We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA November 2003 © Juan Fernando Saldarriaga Echavarria, 2003 ABSTRACT New sequences of ribosomal and protein genes were combined with available morphological and paleontological data to produce a phylogenetic framework for dinoflagellates. The evolutionary history of some of the major morphological features of the group was then investigated in the light of that framework. Phylogenetic trees of dinoflagellates based on the small subunit ribosomal RNA gene (SSU) are generally poorly resolved but include many well- supported clades, and while combined analyses of SSU and LSU (large subunit ribosomal RNA) improve the support for several nodes, they are still generally unsatisfactory. Protein-gene based trees lack the degree of species representation necessary for meaningful in-group phylogenetic analyses, but do provide important insights to the phylogenetic position of dinoflagellates as a whole and on the identity of their close relatives. Molecular data agree with paleontology in suggesting an early evolutionary radiation of the group, but whereas paleontological data include only taxa with fossilizable cysts, the new data examined here establish that this radiation event included all dinokaryotic lineages, including athecate forms. Plastids were lost and replaced many times in dinoflagellates, a situation entirely unique for this group. Histones could well have been lost earlier in the lineage than previously assumed. -
Novel Interactions Between Phytoplankton and Microzooplankton: Their Influence on the Coupling Between Growth and Grazing Rates in the Sea
Hydrobiologia 480: 41–54, 2002. 41 C.E. Lee, S. Strom & J. Yen (eds), Progress in Zooplankton Biology: Ecology, Systematics, and Behavior. © 2002 Kluwer Academic Publishers. Printed in the Netherlands. Novel interactions between phytoplankton and microzooplankton: their influence on the coupling between growth and grazing rates in the sea Suzanne Strom Shannon Point Marine Center, Western Washington University, 1900 Shannon Point Rd., Anacortes, WA 98221, U.S.A. Tel: 360-293-2188. E-mail: [email protected] Key words: phytoplankton, microzooplankton, grazing, stability, behavior, evolution Abstract Understanding the processes that regulate phytoplankton biomass and growth rate remains one of the central issues for biological oceanography. While the role of resources in phytoplankton regulation (‘bottom up’ control) has been explored extensively, the role of grazing (‘top down’ control) is less well understood. This paper seeks to apply the approach pioneered by Frost and others, i.e. exploring consequences of individual grazer behavior for whole ecosystems, to questions about microzooplankton–phytoplankton interactions. Given the diversity and paucity of phytoplankton prey in much of the sea, there should be strong pressure for microzooplankton, the primary grazers of most phytoplankton, to evolve strategies that maximize prey encounter and utilization while allowing for survival in times of scarcity. These strategies include higher grazing rates on faster-growing phytoplankton cells, the direct use of light for enhancement of protist digestion rates, nutritional plasticity, rapid population growth combined with formation of resting stages, and defenses against predatory zooplankton. Most of these phenomena should increase community-level coupling (i.e. the degree of instantaneous and time-dependent similarity) between rates of phytoplankton growth and microzooplankton grazing, tending to stabilize planktonic ecosystems. -
The Macronuclear Genome of Stentor Coeruleus Reveals Tiny Introns in a Giant Cell
University of Pennsylvania ScholarlyCommons Departmental Papers (Biology) Department of Biology 2-20-2017 The Macronuclear Genome of Stentor coeruleus Reveals Tiny Introns in a Giant Cell Mark M. Slabodnick University of California, San Francisco J. G. Ruby University of California, San Francisco Sarah B. Reiff University of California, San Francisco Estienne C. Swart University of Bern Sager J. Gosai University of Pennsylvania See next page for additional authors Follow this and additional works at: https://repository.upenn.edu/biology_papers Recommended Citation Slabodnick, M. M., Ruby, J. G., Reiff, S. B., Swart, E. C., Gosai, S. J., Prabakaran, S., Witkowska, E., Larue, G. E., Gregory, B. D., Nowacki, M., Derisi, J., Roy, S. W., Marshall, W. F., & Sood, P. (2017). The Macronuclear Genome of Stentor coeruleus Reveals Tiny Introns in a Giant Cell. Current Biology, 27 (4), 569-575. http://dx.doi.org/10.1016/j.cub.2016.12.057 This paper is posted at ScholarlyCommons. https://repository.upenn.edu/biology_papers/49 For more information, please contact [email protected]. The Macronuclear Genome of Stentor coeruleus Reveals Tiny Introns in a Giant Cell Abstract The giant, single-celled organism Stentor coeruleus has a long history as a model system for studying pattern formation and regeneration in single cells. Stentor [1, 2] is a heterotrichous ciliate distantly related to familiar ciliate models, such as Tetrahymena or Paramecium. The primary distinguishing feature of Stentor is its incredible size: a single cell is 1 mm long. Early developmental biologists, including T.H. Morgan [3], were attracted to the system because of its regenerative abilities—if large portions of a cell are surgically removed, the remnant reorganizes into a normal-looking but smaller cell with correct proportionality [2, 3]. -
University of Oklahoma
UNIVERSITY OF OKLAHOMA GRADUATE COLLEGE MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION SUBMITTED TO THE GRADUATE FACULTY in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY By JOSHUA THOMAS COOPER Norman, Oklahoma 2017 MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION APPROVED FOR THE DEPARTMENT OF MICROBIOLOGY AND PLANT BIOLOGY BY ______________________________ Dr. Boris Wawrik, Chair ______________________________ Dr. J. Phil Gibson ______________________________ Dr. Anne K. Dunn ______________________________ Dr. John Paul Masly ______________________________ Dr. K. David Hambright ii © Copyright by JOSHUA THOMAS COOPER 2017 All Rights Reserved. iii Acknowledgments I would like to thank my two advisors Dr. Boris Wawrik and Dr. J. Phil Gibson for helping me become a better scientist and better educator. I would also like to thank my committee members Dr. Anne K. Dunn, Dr. K. David Hambright, and Dr. J.P. Masly for providing valuable inputs that lead me to carefully consider my research questions. I would also like to thank Dr. J.P. Masly for the opportunity to coauthor a book chapter on the speciation of diatoms. It is still such a privilege that you believed in me and my crazy diatom ideas to form a concise chapter in addition to learn your style of writing has been a benefit to my professional development. I’m also thankful for my first undergraduate research mentor, Dr. Miriam Steinitz-Kannan, now retired from Northern Kentucky University, who was the first to show the amazing wonders of pond scum. Who knew that studying diatoms and algae as an undergraduate would lead me all the way to a Ph.D. -
(Alveolata) As Inferred from Hsp90 and Actin Phylogenies1
J. Phycol. 40, 341–350 (2004) r 2004 Phycological Society of America DOI: 10.1111/j.1529-8817.2004.03129.x EARLY EVOLUTIONARY HISTORY OF DINOFLAGELLATES AND APICOMPLEXANS (ALVEOLATA) AS INFERRED FROM HSP90 AND ACTIN PHYLOGENIES1 Brian S. Leander2 and Patrick J. Keeling Canadian Institute for Advanced Research, Program in Evolutionary Biology, Departments of Botany and Zoology, University of British Columbia, Vancouver, British Columbia, Canada Three extremely diverse groups of unicellular The Alveolata is one of the most biologically diverse eukaryotes comprise the Alveolata: ciliates, dino- supergroups of eukaryotic microorganisms, consisting flagellates, and apicomplexans. The vast phenotypic of ciliates, dinoflagellates, apicomplexans, and several distances between the three groups along with the minor lineages. Although molecular phylogenies un- enigmatic distribution of plastids and the economic equivocally support the monophyly of alveolates, and medical importance of several representative members of the group share only a few derived species (e.g. Plasmodium, Toxoplasma, Perkinsus, and morphological features, such as distinctive patterns of Pfiesteria) have stimulated a great deal of specula- cortical vesicles (syn. alveoli or amphiesmal vesicles) tion on the early evolutionary history of alveolates. subtending the plasma membrane and presumptive A robust phylogenetic framework for alveolate pinocytotic structures, called ‘‘micropores’’ (Cavalier- diversity will provide the context necessary for Smith 1993, Siddall et al. 1997, Patterson -
Light and Growth Medium Effect on Chlorella Vulgaris Biomass Production
Journal of Environmental Chemical Engineering 2 (2014) 665–674 Contents lists available at ScienceDirect Journal of Environmental Chemical Engineering journal homepage: www.elsevier.com/locate/jece Light and growth medium effect on Chlorella vulgaris biomass production Matthew Forrest Blair, Bahareh Kokabian, Veera Gnaneswar Gude * Civil and Environmental Engineering Department, Mississippi State University, Mississippi State, MS 39762, USA ARTICLE INFO ABSTRACT Article history: Algae can serve as feedstock for many high value bioproducts and biofuels production. The key to Received 27 June 2013 economic algal biomass production is to optimize the growth conditions. This study presents the effect of Received in revised form 6 November 2013 light wavelengths and growth medium composition on the growth of Chlorella vulgaris. Different light Accepted 6 November 2013 wavelengths [blue, clear (white), green, and red] were used to test their effect on algal growth. Growth media formulations were varied to optimize the growth media composition for maximized algal biomass Keywords: production. Experimental study was conducted in three phases to evaluate: (1) the effect of different Nutrient optimization light wavelengths; (2) the effect of the recommended growth medium at 25%, 50%, and 100% of Growth rates suggested composition; and (3) the effect of nutrient concentrations (nitrogen and phosphorous). The Chlorella vulgaris Light effect effect of these factors was evaluated through specific algal growth rates and volumetric biomass Volumetric biomass productivity productivities during the entire growth period. In this study, blue light performed better (higher growth rate and biomass productivity) at longer growth periods (10–14 days) compared to clear, red and green light wavelengths. The growth media and nutrient effect results indicate that the growth of C. -
Fine Structure of Division in Ciliate Protozoa I
FINE STRUCTURE OF DIVISION IN CILIATE PROTOZOA I. Micronuclear Mitosis in Blepharisma R. A. JENKINS From the Department of Biochemistry and Biophysics, Iowa State University, Ames, Iowa 50010. The author's present address is the Department of Zoology and Physiology, University of Wy- oming, Laramie, Wyoming 82070 ABSTRACT The mitotic, micronuclear division of the heterotrichous genus Blepharisma has been studied by electron microscopy. Dividing ciliates were selected from clone-derived mass cultures and fixed for electron microscopy by exposure to the vapor of 2 % osmium tetroxide; individual Blepharisma were encapsulated and sectioned. Distinctive features of the mitosis are the pres- ence of an intact nuclear envelope during the entire process and the absence of centrioles at the polar ends of the micronuclear figures. Spindle microtubules (SMT) first appear in ad- vance of chromosome alignment, become more numerous and precisely aligned by meta- phase, lengthen greatly in anaphase, and persist through telophase. Distinct chromosomal and continuous SMT are present. At telophase, daughter nuclei are separated by a spindle elongation of more than 40 u, and a new nuclear envelope is formed in close apposition to the chromatin mass of each daughter nucleus and excludes the great amount of spindle material formed during division. The original nuclear envelope which has remained struc- turally intact then becomes discontinuous and releases the newly formed nucleus into the cytoplasm. The micronuclear envelope seems to lack the conspicuous pores that are typical of nuclear envelopes. The morphology, size, formation, and function of SMT and the nature of micronuclear division are discussed. INTRODUCTION To date electron microscopy of protozoan nuclei includes almost no description of micronuclei has resulted in the description of numerous and and by the recent suggestion that a true mitosis diverse structures which are not always reconcil- does not occur in ciliate micronuclei (9). -
Non-Axenic Microalgae Cultivation in Space – Challenges for the Membrane Μgpbr of the ISS Experiment PBR@LSR
48th International Conference on Environmental Systems ICES-2018-186 8-12 July 2018, Albuquerque, New Mexico Non-axenic microalgae cultivation in space – Challenges for the membrane µgPBR of the ISS experiment PBR@LSR Harald Helisch1, Stefan Belz2, Jochen Keppler3, Gisela Detrell4, Norbert Henn5, Stefanos Fasoulas6, Reinhold Ewald7 Institute of Space Systems, University of Stuttgart, Germany and Oliver Angerer8 German Aerospace Center (DLR), Bonn, Germany Keywords: PBR@LSR, ISS experiment, microalgae, Chlorella vulgaris, long-term cultivation, biofilm The spaceflight experiment PBR@LSR (Photobioreactor at the Life Support Rack) shall demonstrate for the first time the technology and performance of a hybrid life support system – a combination of physico-chemical and biotechnological components – under real space conditions during an operation period of 180 days. To be launched to the International Space Station (ISS) in 2018, PBR@LSR combines the carbon dioxide (CO2) concentrator of ESA’s Life Support Rack (LSR) with an advanced microalgae photobioreactor (PBR). Accommodated in the Destiny module, LSR will concentrate CO2 from the cabin atmosphere. A dedicated interface allows the utilization of the highly concentrated surplus CO2 for the cultivation of the green microalgae species Chlorella vulgaris. Current research at the University of Stuttgart focuses on the fundamental investigation and optimization of non-axenic cultivation processes in µg capable membrane PBRs. This includes the characterization of influences of accompanying bacteria on the non-axenic microalgae culture stability within the PBR suspension loop, photosynthetic capacity as well as overall biomass composition. This paper discusses in general possible influences of emerging bacteria- or algae induced biofilm formation and cell clustering due to non-axenic processing on the long term functionality of µg adapted PBR systems, e.g. -
Pusillus Poseidon's Guide to Protozoa
Pusillus Poseidon’s guide to PROTOZOA GENERAL NOTES ABOUT PROTOZOANS Protozoa are also called protists. The word “protist” is the more general term and includes all types of single-celled eukaryotes, whereas “protozoa” is more often used to describe the protists that are animal-like (as opposed to plant-like or fungi-like). Protists are measured using units called microns. There are 1000 microns in one millimeter. A millimeter is the smallest unit on a metric ruler and can be estimated with your fingers: The traditional way of classifying protists is by the way they look (morphology), by the way they move (mo- tility), and how and what they eat. This gives us terms such as ciliates, flagellates, ameboids, and all those colors of algae. Recently, the classification system has been overhauled and has become immensely complicated. (Infor- mation about DNA is now the primary consideration for classification, rather than how a creature looks or acts.) If you research these creatures on Wikipedia, you will see this new system being used. Bear in mind, however, that the categories are constantly shifting as we learn more and more about protist DNA. Here is a visual overview that might help you understand the wide range of similarities and differences. Some organisms fit into more than one category and some don’t fit well into any category. Always remember that classification is an artificial construct made by humans. The organisms don’t know anything about it and they don’t care what we think! CILIATES Eats anything smaller than Blepharisma looks slightly pink because it Blepharisma itself, even smaller Bleph- makes a red pigment that senses light (simi- arismas. -
A Preliminary Survey on the Planktonic Biota in a Hypersaline Pond of Messolonghi Saltworks (W
diversity Article A Preliminary Survey on the Planktonic Biota in a Hypersaline Pond of Messolonghi Saltworks (W. Greece) George N. Hotos Plankton Culture Laboratory, Department of Animal Production, Fisheries & Aquaculture, University of Patras, 30200 Messolonghi, Greece; [email protected] Abstract: During a survey in 2015, an impressive assemblage of organisms was found in a hypersaline pond of the Messolonghi saltworks. The salinity ranged between 50 and 180 ppt, and the organisms that were found fell into the categories of Cyanobacteria (17 species), Chlorophytes (4 species), Diatoms (23 species), Dinoflagellates (1 species), Protozoa (40 species), Rotifers (8 species), Copepods (1 species), Artemia sp., one nematode and Alternaria sp. (Fungi). Fabrea salina was the most prominent protist among all samples and salinities. This ciliate has the potential to be a live food candidate for marine fish larvae. Asteromonas gracilis proved to be a sturdy microalga, performing well in a broad spectrum of culture salinities. Most of the specimens were identified to the genus level only. Based on their morphology, as there are no relevant records in Greece, there is a possibility for some to be either new species or strikingly different strains of certain species recorded elsewhere. Keywords: protists; cyanobacteria; rotifers; crustacea; hypersaline conditions; Messolonghi saltworks 1. Introduction Citation: Hotos, G.N. A Preliminary It is well known that saltwork waters support high algal densities due to the abun- Survey on the Planktonic Biota in a dance of nutrients concentrated by evaporation [1–3]. Apart from the fact that such Hypersaline Pond of Messolonghi ecosystems are of paramount ecological value, they are also a potential source for tolerant Saltworks (W. -
Genetic Diversity of Symbiotic Green Algae of Paramecium Bursaria Syngens Originating from Distant Geographical Locations
plants Article Genetic Diversity of Symbiotic Green Algae of Paramecium bursaria Syngens Originating from Distant Geographical Locations Magdalena Greczek-Stachura 1, Patrycja Zagata Le´snicka 1, Sebastian Tarcz 2 , Maria Rautian 3 and Katarzyna Mozd˙ ze˙ ´n 1,* 1 Institute of Biology, Pedagogical University of Krakow, Podchor ˛azych˙ 2, 30-084 Kraków, Poland; [email protected] (M.G.-S.); [email protected] (P.Z.L.) 2 Institute of Systematics and Evolution of Animals, Polish Academy of Sciences, Sławkowska 17, 31-016 Krakow, Poland; [email protected] 3 Laboratory of Protistology and Experimental Zoology, Faculty of Biology and Soil Science, St. Petersburg State University, Universitetskaya nab. 7/9, 199034 Saint Petersburg, Russia; [email protected] * Correspondence: [email protected] Abstract: Paramecium bursaria (Ehrenberg 1831) is a ciliate species living in a symbiotic relationship with green algae. The aim of the study was to identify green algal symbionts of P. bursaria originating from distant geographical locations and to answer the question of whether the occurrence of en- dosymbiont taxa was correlated with a specific ciliate syngen (sexually separated sibling group). In a comparative analysis, we investigated 43 P. bursaria symbiont strains based on molecular features. Three DNA fragments were sequenced: two from the nuclear genomes—a fragment of the ITS1-5.8S rDNA-ITS2 region and a fragment of the gene encoding large subunit ribosomal RNA (28S rDNA), Citation: Greczek-Stachura, M.; as well as a fragment of the plastid genome comprising the 30rpl36-50infA genes. The analysis of two Le´snicka,P.Z.; Tarcz, S.; Rautian, M.; Mozd˙ ze´n,K.˙ Genetic Diversity of ribosomal sequences showed the presence of 29 haplotypes (haplotype diversity Hd = 0.98736 for Symbiotic Green Algae of Paramecium ITS1-5.8S rDNA-ITS2 and Hd = 0.908 for 28S rDNA) in the former two regions, and 36 haplotypes 0 0 bursaria Syngens Originating from in the 3 rpl36-5 infA gene fragment (Hd = 0.984). -
New Observations on Green Hydra Symbiosis
Folia biologica (Kraków), vol. 55 (2007), No 1-2 Short Note New Observations on Green Hydra Symbiosis Goran KOVAÈEVIÆ, Mirjana KALAFATIÆ and Nikola LJUBEŠIÆ Accepted September 20, 2006 KOVAÈEVIÆ G., KALAFATIÆ M., LJUBEŠIÆ N. 2007. New observations on green hydra symbiosis. Folia biol. (Kraków) 55: 77-79. New observations on green hydra symbiosis are described. Herbicide norflurazon was chosen as a «trigger» for analysis of these observations. Green hydra (Hydra viridissima Pallas, 1766) is a typical example of endosymbiosis. In its gastrodermal myoeptihelial cells it contains individuals of Chlorella vulgaris Beij. (KESSLER &HUSS 1992). Ultrastructural changes were observed by means of TEM. The newly described morphological features of green hydra symbiosis included a widening of the perialgal space, missing symbiosomes and joining of the existing perialgal spaces. Also, on the basis of the newly described mechanisms, the recovery of green hydra after a period of intoxication was explained. The final result of the disturbed symbiosis between hydra and algae was the reassembly of the endosymbiosis in surviving individuals. Key words: Green hydra, Chlorella, perialgal space, symbiosome, symbiosis reassembly. Goran KOVAÈEVIÆ, Mirjana KALAFATIÆ, Faculty of Science, University of Zagreb, Depart- ment of Zoology, Rooseveltov trg 6, HR-10000 Zagreb, Croatia, E-mail: [email protected] Nikola LJUBEŠIÆ, Ruðer Boškoviæ Institute, Department of Molecular Genetics, Bijenièka cesta 54, HR-10000 Zagreb, Croatia. Symbiosis is one of the most important and most CATINE 1973; RAHAT 1991; SHIMIZU &FUJI- interesting subjects in evolutionary biology. In re- SAWA 2003). Green hydra is a typical example of cent years this area of research was much revived, endosymbiosis.