A Preliminary Survey on the Planktonic Biota in a Hypersaline Pond of Messolonghi Saltworks (W
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Molecular Data and the Evolutionary History of Dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Un
Molecular data and the evolutionary history of dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Universitat Heidelberg, 1993 A THESIS SUBMITTED IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES Department of Botany We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA November 2003 © Juan Fernando Saldarriaga Echavarria, 2003 ABSTRACT New sequences of ribosomal and protein genes were combined with available morphological and paleontological data to produce a phylogenetic framework for dinoflagellates. The evolutionary history of some of the major morphological features of the group was then investigated in the light of that framework. Phylogenetic trees of dinoflagellates based on the small subunit ribosomal RNA gene (SSU) are generally poorly resolved but include many well- supported clades, and while combined analyses of SSU and LSU (large subunit ribosomal RNA) improve the support for several nodes, they are still generally unsatisfactory. Protein-gene based trees lack the degree of species representation necessary for meaningful in-group phylogenetic analyses, but do provide important insights to the phylogenetic position of dinoflagellates as a whole and on the identity of their close relatives. Molecular data agree with paleontology in suggesting an early evolutionary radiation of the group, but whereas paleontological data include only taxa with fossilizable cysts, the new data examined here establish that this radiation event included all dinokaryotic lineages, including athecate forms. Plastids were lost and replaced many times in dinoflagellates, a situation entirely unique for this group. Histones could well have been lost earlier in the lineage than previously assumed. -
Novel Interactions Between Phytoplankton and Microzooplankton: Their Influence on the Coupling Between Growth and Grazing Rates in the Sea
Hydrobiologia 480: 41–54, 2002. 41 C.E. Lee, S. Strom & J. Yen (eds), Progress in Zooplankton Biology: Ecology, Systematics, and Behavior. © 2002 Kluwer Academic Publishers. Printed in the Netherlands. Novel interactions between phytoplankton and microzooplankton: their influence on the coupling between growth and grazing rates in the sea Suzanne Strom Shannon Point Marine Center, Western Washington University, 1900 Shannon Point Rd., Anacortes, WA 98221, U.S.A. Tel: 360-293-2188. E-mail: [email protected] Key words: phytoplankton, microzooplankton, grazing, stability, behavior, evolution Abstract Understanding the processes that regulate phytoplankton biomass and growth rate remains one of the central issues for biological oceanography. While the role of resources in phytoplankton regulation (‘bottom up’ control) has been explored extensively, the role of grazing (‘top down’ control) is less well understood. This paper seeks to apply the approach pioneered by Frost and others, i.e. exploring consequences of individual grazer behavior for whole ecosystems, to questions about microzooplankton–phytoplankton interactions. Given the diversity and paucity of phytoplankton prey in much of the sea, there should be strong pressure for microzooplankton, the primary grazers of most phytoplankton, to evolve strategies that maximize prey encounter and utilization while allowing for survival in times of scarcity. These strategies include higher grazing rates on faster-growing phytoplankton cells, the direct use of light for enhancement of protist digestion rates, nutritional plasticity, rapid population growth combined with formation of resting stages, and defenses against predatory zooplankton. Most of these phenomena should increase community-level coupling (i.e. the degree of instantaneous and time-dependent similarity) between rates of phytoplankton growth and microzooplankton grazing, tending to stabilize planktonic ecosystems. -
The Macronuclear Genome of Stentor Coeruleus Reveals Tiny Introns in a Giant Cell
University of Pennsylvania ScholarlyCommons Departmental Papers (Biology) Department of Biology 2-20-2017 The Macronuclear Genome of Stentor coeruleus Reveals Tiny Introns in a Giant Cell Mark M. Slabodnick University of California, San Francisco J. G. Ruby University of California, San Francisco Sarah B. Reiff University of California, San Francisco Estienne C. Swart University of Bern Sager J. Gosai University of Pennsylvania See next page for additional authors Follow this and additional works at: https://repository.upenn.edu/biology_papers Recommended Citation Slabodnick, M. M., Ruby, J. G., Reiff, S. B., Swart, E. C., Gosai, S. J., Prabakaran, S., Witkowska, E., Larue, G. E., Gregory, B. D., Nowacki, M., Derisi, J., Roy, S. W., Marshall, W. F., & Sood, P. (2017). The Macronuclear Genome of Stentor coeruleus Reveals Tiny Introns in a Giant Cell. Current Biology, 27 (4), 569-575. http://dx.doi.org/10.1016/j.cub.2016.12.057 This paper is posted at ScholarlyCommons. https://repository.upenn.edu/biology_papers/49 For more information, please contact [email protected]. The Macronuclear Genome of Stentor coeruleus Reveals Tiny Introns in a Giant Cell Abstract The giant, single-celled organism Stentor coeruleus has a long history as a model system for studying pattern formation and regeneration in single cells. Stentor [1, 2] is a heterotrichous ciliate distantly related to familiar ciliate models, such as Tetrahymena or Paramecium. The primary distinguishing feature of Stentor is its incredible size: a single cell is 1 mm long. Early developmental biologists, including T.H. Morgan [3], were attracted to the system because of its regenerative abilities—if large portions of a cell are surgically removed, the remnant reorganizes into a normal-looking but smaller cell with correct proportionality [2, 3]. -
The Planktonic Protist Interactome: Where Do We Stand After a Century of Research?
bioRxiv preprint doi: https://doi.org/10.1101/587352; this version posted May 2, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Bjorbækmo et al., 23.03.2019 – preprint copy - BioRxiv The planktonic protist interactome: where do we stand after a century of research? Marit F. Markussen Bjorbækmo1*, Andreas Evenstad1* and Line Lieblein Røsæg1*, Anders K. Krabberød1**, and Ramiro Logares2,1** 1 University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N- 0316 Oslo, Norway 2 Institut de Ciències del Mar (CSIC), Passeig Marítim de la Barceloneta, 37-49, ES-08003, Barcelona, Catalonia, Spain * The three authors contributed equally ** Corresponding authors: Ramiro Logares: Institute of Marine Sciences (ICM-CSIC), Passeig Marítim de la Barceloneta 37-49, 08003, Barcelona, Catalonia, Spain. Phone: 34-93-2309500; Fax: 34-93-2309555. [email protected] Anders K. Krabberød: University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N-0316 Oslo, Norway. Phone +47 22845986, Fax: +47 22854726. [email protected] Abstract Microbial interactions are crucial for Earth ecosystem function, yet our knowledge about them is limited and has so far mainly existed as scattered records. Here, we have surveyed the literature involving planktonic protist interactions and gathered the information in a manually curated Protist Interaction DAtabase (PIDA). In total, we have registered ~2,500 ecological interactions from ~500 publications, spanning the last 150 years. -
University of Oklahoma
UNIVERSITY OF OKLAHOMA GRADUATE COLLEGE MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION SUBMITTED TO THE GRADUATE FACULTY in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY By JOSHUA THOMAS COOPER Norman, Oklahoma 2017 MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION APPROVED FOR THE DEPARTMENT OF MICROBIOLOGY AND PLANT BIOLOGY BY ______________________________ Dr. Boris Wawrik, Chair ______________________________ Dr. J. Phil Gibson ______________________________ Dr. Anne K. Dunn ______________________________ Dr. John Paul Masly ______________________________ Dr. K. David Hambright ii © Copyright by JOSHUA THOMAS COOPER 2017 All Rights Reserved. iii Acknowledgments I would like to thank my two advisors Dr. Boris Wawrik and Dr. J. Phil Gibson for helping me become a better scientist and better educator. I would also like to thank my committee members Dr. Anne K. Dunn, Dr. K. David Hambright, and Dr. J.P. Masly for providing valuable inputs that lead me to carefully consider my research questions. I would also like to thank Dr. J.P. Masly for the opportunity to coauthor a book chapter on the speciation of diatoms. It is still such a privilege that you believed in me and my crazy diatom ideas to form a concise chapter in addition to learn your style of writing has been a benefit to my professional development. I’m also thankful for my first undergraduate research mentor, Dr. Miriam Steinitz-Kannan, now retired from Northern Kentucky University, who was the first to show the amazing wonders of pond scum. Who knew that studying diatoms and algae as an undergraduate would lead me all the way to a Ph.D. -
Wrc Research Report No. 131 Effects of Feedlot Runoff
WRC RESEARCH REPORT NO. 131 EFFECTS OF FEEDLOT RUNOFF ON FREE-LIVING AQUATIC CILIATED PROTOZOA BY Kenneth S. Todd, Jr. College of Veterinary Medicine Department of Veterinary Pathology and Hygiene University of Illinois Urbana, Illinois 61801 FINAL REPORT PROJECT NO. A-074-ILL This project was partially supported by the U. S. ~epartmentof the Interior in accordance with the Water Resources Research Act of 1964, P .L. 88-379, Agreement No. 14-31-0001-7030. UNIVERSITY OF ILLINOIS WATER RESOURCES CENTER 2535 Hydrosystems Laboratory Urbana, Illinois 61801 AUGUST 1977 ABSTRACT Water samples and free-living and sessite ciliated protozoa were col- lected at various distances above and below a stream that received runoff from a feedlot. No correlation was found between the species of protozoa recovered, water chemistry, location in the stream, or time of collection. Kenneth S. Todd, Jr'. EFFECTS OF FEEDLOT RUNOFF ON FREE-LIVING AQUATIC CILIATED PROTOZOA Final Report Project A-074-ILL, Office of Water Resources Research, Department of the Interior, August 1977, Washington, D.C., 13 p. KEYWORDS--*ciliated protozoa/feed lots runoff/*water pollution/water chemistry/Illinois/surface water INTRODUCTION The current trend for feeding livestock in the United States is toward large confinement types of operation. Most of these large commercial feedlots have some means of manure disposal and programs to prevent runoff from feed- lots from reaching streams. However, there are still large numbers of smaller feedlots, many of which do not have adequate facilities for disposal of manure or preventing runoff from reaching waterways. The production of wastes by domestic animals was often not considered in the past, but management of wastes is currently one of the largest problems facing the livestock industry. -
An Evolutionary Switch in the Specificity of an Endosomal CORVET Tether Underlies
bioRxiv preprint doi: https://doi.org/10.1101/210328; this version posted October 27, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Title: An evolutionary switch in the specificity of an endosomal CORVET tether underlies formation of regulated secretory vesicles in the ciliate Tetrahymena thermophila Daniela Sparvolia, Elisabeth Richardsonb*, Hiroko Osakadac*, Xun Land,e*, Masaaki Iwamotoc, Grant R. Bowmana,f, Cassandra Kontura,g, William A. Bourlandh, Denis H. Lynni,j, Jonathan K. Pritchardd,e,k, Tokuko Haraguchic,l, Joel B. Dacksb, and Aaron P. Turkewitza th a Department of Molecular Genetics and Cell Biology, The University of Chicago, 920 E 58 Street, Chicago IL USA b Department of Cell Biology, University of Alberta, Canada c Advanced ICT Research Institute, National Institute of Information and Communications Technology (NICT), Kobe 651-2492, Japan. d Department of Genetics, Stanford University, Stanford, CA, 94305 e Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305 f current affiliation: Department of Molecular Biology, University of Wyoming, Laramie g current affiliation: Department of Genetics, Yale University School of Medicine, New Haven, CT 06510 h Department of Biological Sciences, Boise State University, Boise ID 83725-1515 I Department of Integrative Biology, University of Guelph, Guelph ON N1G 2W1, Canada j current affiliation: Department of Zoology, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada k Department of Biology, Stanford University, Stanford, CA, 94305 l Graduate School of Frontier Biosciences, Osaka University, Suita 565-0871, Japan. -
An Integrative Approach Sheds New Light Onto the Systematics
www.nature.com/scientificreports OPEN An integrative approach sheds new light onto the systematics and ecology of the widespread ciliate genus Coleps (Ciliophora, Prostomatea) Thomas Pröschold1*, Daniel Rieser1, Tatyana Darienko2, Laura Nachbaur1, Barbara Kammerlander1, Kuimei Qian1,3, Gianna Pitsch4, Estelle Patricia Bruni4,5, Zhishuai Qu6, Dominik Forster6, Cecilia Rad‑Menendez7, Thomas Posch4, Thorsten Stoeck6 & Bettina Sonntag1 Species of the genus Coleps are one of the most common planktonic ciliates in lake ecosystems. The study aimed to identify the phenotypic plasticity and genetic variability of diferent Coleps isolates from various water bodies and from culture collections. We used an integrative approach to study the strains by (i) cultivation in a suitable culture medium, (ii) screening of the morphological variability including the presence/absence of algal endosymbionts of living cells by light microscopy, (iii) sequencing of the SSU and ITS rDNA including secondary structures, (iv) assessment of their seasonal and spatial occurrence in two lakes over a one‑year cycle both from morphospecies counts and high‑ throughput sequencing (HTS), and, (v) proof of the co‑occurrence of Coleps and their endosymbiotic algae from HTS‑based network analyses in the two lakes. The Coleps strains showed a high phenotypic plasticity and low genetic variability. The algal endosymbiont in all studied strains was Micractinium conductrix and the mutualistic relationship turned out as facultative. Coleps is common in both lakes over the whole year in diferent depths and HTS has revealed that only one genotype respectively one species, C. viridis, was present in both lakes despite the diferent lifestyles (mixotrophic with green algal endosymbionts or heterotrophic without algae). -
The Symbiotic Life of Symbiodinium in the Open Ocean Within a New Species of Calcifying Ciliate (Tiarina Sp.)
The ISME Journal (2016) 10, 1424–1436 © 2016 International Society for Microbial Ecology All rights reserved 1751-7362/16 www.nature.com/ismej ORIGINAL ARTICLE The symbiotic life of Symbiodinium in the open ocean within a new species of calcifying ciliate (Tiarina sp.) Solenn Mordret1,2,5, Sarah Romac1,2, Nicolas Henry1,2, Sébastien Colin1,2, Margaux Carmichael1,2, Cédric Berney1,2, Stéphane Audic1,2, Daniel J Richter1,2, Xavier Pochon3,4, Colomban de Vargas1,2 and Johan Decelle1,2,6 1EPEP—Evolution des Protistes et des Ecosystèmes Pélagiques—team, Sorbonne Universités, UPMC Univ Paris 06, UMR 7144, Station Biologique de Roscoff, Roscoff, France; 2CNRS, UMR 7144, Station Biologique de Roscoff, Roscoff, France; 3Coastal and Freshwater Group, Cawthron Institute, Nelson, New Zealand and 4Institute of Marine Science, University of Auckland, Auckland, New Zealand Symbiotic partnerships between heterotrophic hosts and intracellular microalgae are common in tropical and subtropical oligotrophic waters of benthic and pelagic marine habitats. The iconic example is the photosynthetic dinoflagellate genus Symbiodinium that establishes mutualistic symbioses with a wide diversity of benthic hosts, sustaining highly biodiverse reef ecosystems worldwide. Paradoxically, although various species of photosynthetic dinoflagellates are prevalent eukaryotic symbionts in pelagic waters, Symbiodinium has not yet been reported in symbiosis within oceanic plankton, despite its high propensity for the symbiotic lifestyle. Here we report a new pelagic photosymbiosis between a calcifying ciliate host and the microalga Symbiodinium in surface ocean waters. Confocal and scanning electron microscopy, together with an 18S rDNA-based phylogeny, showed that the host is a new ciliate species closely related to Tiarina fusus (Colepidae). -
(Alveolata) As Inferred from Hsp90 and Actin Phylogenies1
J. Phycol. 40, 341–350 (2004) r 2004 Phycological Society of America DOI: 10.1111/j.1529-8817.2004.03129.x EARLY EVOLUTIONARY HISTORY OF DINOFLAGELLATES AND APICOMPLEXANS (ALVEOLATA) AS INFERRED FROM HSP90 AND ACTIN PHYLOGENIES1 Brian S. Leander2 and Patrick J. Keeling Canadian Institute for Advanced Research, Program in Evolutionary Biology, Departments of Botany and Zoology, University of British Columbia, Vancouver, British Columbia, Canada Three extremely diverse groups of unicellular The Alveolata is one of the most biologically diverse eukaryotes comprise the Alveolata: ciliates, dino- supergroups of eukaryotic microorganisms, consisting flagellates, and apicomplexans. The vast phenotypic of ciliates, dinoflagellates, apicomplexans, and several distances between the three groups along with the minor lineages. Although molecular phylogenies un- enigmatic distribution of plastids and the economic equivocally support the monophyly of alveolates, and medical importance of several representative members of the group share only a few derived species (e.g. Plasmodium, Toxoplasma, Perkinsus, and morphological features, such as distinctive patterns of Pfiesteria) have stimulated a great deal of specula- cortical vesicles (syn. alveoli or amphiesmal vesicles) tion on the early evolutionary history of alveolates. subtending the plasma membrane and presumptive A robust phylogenetic framework for alveolate pinocytotic structures, called ‘‘micropores’’ (Cavalier- diversity will provide the context necessary for Smith 1993, Siddall et al. 1997, Patterson -
Fine Structure of Division in Ciliate Protozoa I
FINE STRUCTURE OF DIVISION IN CILIATE PROTOZOA I. Micronuclear Mitosis in Blepharisma R. A. JENKINS From the Department of Biochemistry and Biophysics, Iowa State University, Ames, Iowa 50010. The author's present address is the Department of Zoology and Physiology, University of Wy- oming, Laramie, Wyoming 82070 ABSTRACT The mitotic, micronuclear division of the heterotrichous genus Blepharisma has been studied by electron microscopy. Dividing ciliates were selected from clone-derived mass cultures and fixed for electron microscopy by exposure to the vapor of 2 % osmium tetroxide; individual Blepharisma were encapsulated and sectioned. Distinctive features of the mitosis are the pres- ence of an intact nuclear envelope during the entire process and the absence of centrioles at the polar ends of the micronuclear figures. Spindle microtubules (SMT) first appear in ad- vance of chromosome alignment, become more numerous and precisely aligned by meta- phase, lengthen greatly in anaphase, and persist through telophase. Distinct chromosomal and continuous SMT are present. At telophase, daughter nuclei are separated by a spindle elongation of more than 40 u, and a new nuclear envelope is formed in close apposition to the chromatin mass of each daughter nucleus and excludes the great amount of spindle material formed during division. The original nuclear envelope which has remained struc- turally intact then becomes discontinuous and releases the newly formed nucleus into the cytoplasm. The micronuclear envelope seems to lack the conspicuous pores that are typical of nuclear envelopes. The morphology, size, formation, and function of SMT and the nature of micronuclear division are discussed. INTRODUCTION To date electron microscopy of protozoan nuclei includes almost no description of micronuclei has resulted in the description of numerous and and by the recent suggestion that a true mitosis diverse structures which are not always reconcil- does not occur in ciliate micronuclei (9). -
PROTISTAS MARINOS Viviana A
PROTISTAS MARINOS Viviana A. Alder INTRODUCCIÓN plantas y animales. Según este esquema básico, a las plantas les correspondían las características de En 1673, el editor de Philosophical Transac- ser organismos sésiles con pigmentos fotosinté- tions of the Royal Society of London recibió una ticos para la síntesis de las sustancias esenciales carta del anatomista Regnier de Graaf informan- para su metabolismo a partir de sustancias inor- do que un comerciante holandés, Antonie van gánicas (nutrición autótrofa), y de poseer células Leeuwenhoek, había “diseñado microscopios rodeadas por paredes de celulosa. En oposición muy superiores a aquéllos que hemos visto has- a las plantas, les correspondía a los animales los ta ahora”. Van Leeuwenhoek vendía lana, algo- atributos de tener motilidad activa y de carecer dón y otros materiales textiles, y se había visto tanto de pigmentos fotosintéticos (debiendo por en la necesidad de mejorar las lentes de aumento lo tanto procurarse su alimento a partir de sustan- que comúnmente usaba para contar el número cias orgánicas sintetizadas por otros organismos) de hebras y evaluar la calidad de fibras y tejidos. como de paredes celulósicas en sus células. Así fue que construyó su primer microscopio de Es a partir de los estudios de Georg Gol- lente única: simple, pequeño, pero con un poder dfuss (1782-1848) que estos diminutos organis- de magnificación de hasta 300 aumentos (¡diez mos, invisibles a ojo desnudo, comienzan a ser veces más que sus precursores!). Este magnífico clasificados como plantas primarias