Wrc Research Report No. 131 Effects of Feedlot Runoff
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Cell Size and Proportional Distance Assessment During Determination of Organelle Position in the Cortex of the Ciliate Tetrahymena
J. Cell Set. ai, 35-46 (1976) 35 Printed in Great Britain CELL SIZE AND PROPORTIONAL DISTANCE ASSESSMENT DURING DETERMINATION OF ORGANELLE POSITION IN THE CORTEX OF THE CILIATE TETRAHYMENA D. H. LYNN AND J. B. TUCKER Department of Zoology, The University, St Andrews, Fife KY16 <)TS, Scotland SUMMARY Developing oral organelles of dividing Tetrahymena corlissi appear to be positioned by mechanisms which assess distances as a proportion of the organism's overall dimensions. In some respects, the cortex of this protozoan obeys the 'French flag' rule formulated by Wolpert for describing regulation of spatial proportions during differentiation of metazoan embryos. Dividing Tetrahymena of markedly different sizes occur when division is synchronized by starvation and refeeding. At the start of cell division, the distance between old and new mouth- parts varies proportionately with respect to cell length. In addition, determination of the site where new oral organelles will develop is apparently not directly related to the number of ciliated basal bodies which separate the 2 sets of mouthparts; the greater the distance between the old and developing sets of mouthparts, the greater the number of ciliated basal bodies in the rows between them. It is suggested that 2 distinct mechanisms are largely responsible for defining organelle position in ciliates. The new terms structural positioning and chemical signalling are denned to describe these mechanisms. INTRODUCTION Organelles are positioned in a very precise and specific fashion in many unicellular organisms. Precisely positioned organelles form particularly well ordered and charac- teristic patterns in the cortices of ciliates. The spatial complexity of these organelle arrays is comparable with the arrangement of different cell types, tissues, and organs in multicellular animals. -
28-Protistsf20r.Ppt [Compatibility Mode]
9/3/20 Ch 28: The Protists (a.k.a. Protoctists) (meet these in more detail in your book and lab) 1 Protists invent: eukaryotic cells size complexity Remember: 1°(primary) endosymbiosis? -> mitochondrion -> chloroplast genome unicellular -> multicellular 2 1 9/3/20 For chloroplasts 2° (secondary) happened (more complicated) {3°(tertiary) happened too} 3 4 Eukaryotic “supergroups” (SG; between K and P) 4 2 9/3/20 Protists invent sex: meiosis and fertilization -> 3 Life Cycles/Histories (Fig 13.6) Spores and some protists (Humans do this one) 5 “Algae” Group PS Pigments Euglenoids chl a & b (& carotenoids) Dinoflagellates chl a & c (usually) (& carotenoids) Diatoms chl a & c (& carotenoids) Xanthophytes chl a & c (& carotenoids) Chrysophytes chl a & c (& carotenoids) Coccolithophorids chl a & c (& carotenoids) Browns chl a & c (& carotenoids) Reds chl a, phycobilins (& carotenoids) Greens chl a & b (& carotenoids) (more groups exist) 6 3 9/3/20 Name word roots (indicate nutrition) “algae” (-phyt-) protozoa (no consistent word ending) “fungal-like” (-myc-) Ecological terms plankton phytoplankton zooplankton 7 SG: Excavata/Excavates “excavated” feeding groove some have reduced mitochondria (e.g.: mitosomes, hydrogenosomes) 8 4 9/3/20 SG: Excavata O: Diplomonads: †Giardia Cl: Parabasalids: Trichonympha (bk only) †Trichomonas P: Euglenophyta/zoa C: Kinetoplastids = trypanosomes/hemoflagellates: †Trypanosoma C: Euglenids: Euglena 9 SG: “SAR” clade: Clade Alveolates cell membrane 10 5 9/3/20 SG: “SAR” clade: Clade Alveolates P: Dinoflagellata/Pyrrophyta: -
The Planktonic Protist Interactome: Where Do We Stand After a Century of Research?
bioRxiv preprint doi: https://doi.org/10.1101/587352; this version posted May 2, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Bjorbækmo et al., 23.03.2019 – preprint copy - BioRxiv The planktonic protist interactome: where do we stand after a century of research? Marit F. Markussen Bjorbækmo1*, Andreas Evenstad1* and Line Lieblein Røsæg1*, Anders K. Krabberød1**, and Ramiro Logares2,1** 1 University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N- 0316 Oslo, Norway 2 Institut de Ciències del Mar (CSIC), Passeig Marítim de la Barceloneta, 37-49, ES-08003, Barcelona, Catalonia, Spain * The three authors contributed equally ** Corresponding authors: Ramiro Logares: Institute of Marine Sciences (ICM-CSIC), Passeig Marítim de la Barceloneta 37-49, 08003, Barcelona, Catalonia, Spain. Phone: 34-93-2309500; Fax: 34-93-2309555. [email protected] Anders K. Krabberød: University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N-0316 Oslo, Norway. Phone +47 22845986, Fax: +47 22854726. [email protected] Abstract Microbial interactions are crucial for Earth ecosystem function, yet our knowledge about them is limited and has so far mainly existed as scattered records. Here, we have surveyed the literature involving planktonic protist interactions and gathered the information in a manually curated Protist Interaction DAtabase (PIDA). In total, we have registered ~2,500 ecological interactions from ~500 publications, spanning the last 150 years. -
University of Oklahoma
UNIVERSITY OF OKLAHOMA GRADUATE COLLEGE MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION SUBMITTED TO THE GRADUATE FACULTY in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY By JOSHUA THOMAS COOPER Norman, Oklahoma 2017 MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION APPROVED FOR THE DEPARTMENT OF MICROBIOLOGY AND PLANT BIOLOGY BY ______________________________ Dr. Boris Wawrik, Chair ______________________________ Dr. J. Phil Gibson ______________________________ Dr. Anne K. Dunn ______________________________ Dr. John Paul Masly ______________________________ Dr. K. David Hambright ii © Copyright by JOSHUA THOMAS COOPER 2017 All Rights Reserved. iii Acknowledgments I would like to thank my two advisors Dr. Boris Wawrik and Dr. J. Phil Gibson for helping me become a better scientist and better educator. I would also like to thank my committee members Dr. Anne K. Dunn, Dr. K. David Hambright, and Dr. J.P. Masly for providing valuable inputs that lead me to carefully consider my research questions. I would also like to thank Dr. J.P. Masly for the opportunity to coauthor a book chapter on the speciation of diatoms. It is still such a privilege that you believed in me and my crazy diatom ideas to form a concise chapter in addition to learn your style of writing has been a benefit to my professional development. I’m also thankful for my first undergraduate research mentor, Dr. Miriam Steinitz-Kannan, now retired from Northern Kentucky University, who was the first to show the amazing wonders of pond scum. Who knew that studying diatoms and algae as an undergraduate would lead me all the way to a Ph.D. -
There Is Not a Latin Root Word Clear Your Desk Protist Quiz Grade Quiz
There is not a Latin Root Word Clear your desk Protist Quiz Grade Quiz Malaria Fever Wars Classification Kingdom Protista contains THREE main groups of organisms: 1. Protozoa: “animal-like protists” 2. Algae: “plant-like protists” 3. Slime & Water Molds: “fungus-like protists” Basics of Protozoa Unicellular Eukaryotic unlike bacteria 65, 000 different species Heterotrophic Free-living (move in aquatic environments) or Parasitic Habitats include oceans, rivers, ponds, soil, and other organisms. Protozoa Reproduction ALL protozoa can use asexual reproduction through binary fission or multiple fission FEW protozoa reproduce sexually through conjugation. Adaptation Special Protozoa Adaptations Eyespot: detects changes in the quantity/ quality of light, and physical/chemical changes in their environment Cyst: hardened external covering that protects protozoa in extreme environments. Basics of Algae: “Plant-like” protists. MOST unicellular; SOME multicellular. Make food by photosynthesis (“autotrophic prostists”). Were classified as plants, BUT… – Lack tissue differentiation- NO roots, stems, leaves, etc. – Reproduce differently Most algal cells have pyrenoids (organelles that make and store starch) Can use asexual or sexual reproduction. Algae Structure: Thallus: body portion; usually haploid Body Structure: 1) unicellular: single-celled; aquatic (Ex.phytoplankton, Chlamydomonas) 2) colonial: groups of coordinated cells; “division of labor” (Ex. Volvox) 3) filamentous: rod-shaped thallus; some anchor to ocean bottom (Ex. Spyrogyra) 4) multicellular: large, complex, leaflike thallus (Ex. Macrocystis- giant kelp) Basics of Fungus-like Protists: Slime Molds: Water Molds: Once classified as fungi Fungus-like; composed of Found in damp soil, branching filaments rotting logs, and other Commonly freshwater; decaying matter. some in soil; some Some white, most yellow parasites. -
An Evolutionary Switch in the Specificity of an Endosomal CORVET Tether Underlies
bioRxiv preprint doi: https://doi.org/10.1101/210328; this version posted October 27, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Title: An evolutionary switch in the specificity of an endosomal CORVET tether underlies formation of regulated secretory vesicles in the ciliate Tetrahymena thermophila Daniela Sparvolia, Elisabeth Richardsonb*, Hiroko Osakadac*, Xun Land,e*, Masaaki Iwamotoc, Grant R. Bowmana,f, Cassandra Kontura,g, William A. Bourlandh, Denis H. Lynni,j, Jonathan K. Pritchardd,e,k, Tokuko Haraguchic,l, Joel B. Dacksb, and Aaron P. Turkewitza th a Department of Molecular Genetics and Cell Biology, The University of Chicago, 920 E 58 Street, Chicago IL USA b Department of Cell Biology, University of Alberta, Canada c Advanced ICT Research Institute, National Institute of Information and Communications Technology (NICT), Kobe 651-2492, Japan. d Department of Genetics, Stanford University, Stanford, CA, 94305 e Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305 f current affiliation: Department of Molecular Biology, University of Wyoming, Laramie g current affiliation: Department of Genetics, Yale University School of Medicine, New Haven, CT 06510 h Department of Biological Sciences, Boise State University, Boise ID 83725-1515 I Department of Integrative Biology, University of Guelph, Guelph ON N1G 2W1, Canada j current affiliation: Department of Zoology, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada k Department of Biology, Stanford University, Stanford, CA, 94305 l Graduate School of Frontier Biosciences, Osaka University, Suita 565-0871, Japan. -
Review and Meta-Analysis of the Environmental Biology and Potential Invasiveness of a Poorly-Studied Cyprinid, the Ide Leuciscus Idus
REVIEWS IN FISHERIES SCIENCE & AQUACULTURE https://doi.org/10.1080/23308249.2020.1822280 REVIEW Review and Meta-Analysis of the Environmental Biology and Potential Invasiveness of a Poorly-Studied Cyprinid, the Ide Leuciscus idus Mehis Rohtlaa,b, Lorenzo Vilizzic, Vladimır Kovacd, David Almeidae, Bernice Brewsterf, J. Robert Brittong, Łukasz Głowackic, Michael J. Godardh,i, Ruth Kirkf, Sarah Nienhuisj, Karin H. Olssonh,k, Jan Simonsenl, Michał E. Skora m, Saulius Stakenas_ n, Ali Serhan Tarkanc,o, Nildeniz Topo, Hugo Verreyckenp, Grzegorz ZieRbac, and Gordon H. Coppc,h,q aEstonian Marine Institute, University of Tartu, Tartu, Estonia; bInstitute of Marine Research, Austevoll Research Station, Storebø, Norway; cDepartment of Ecology and Vertebrate Zoology, Faculty of Biology and Environmental Protection, University of Lodz, Łod z, Poland; dDepartment of Ecology, Faculty of Natural Sciences, Comenius University, Bratislava, Slovakia; eDepartment of Basic Medical Sciences, USP-CEU University, Madrid, Spain; fMolecular Parasitology Laboratory, School of Life Sciences, Pharmacy and Chemistry, Kingston University, Kingston-upon-Thames, Surrey, UK; gDepartment of Life and Environmental Sciences, Bournemouth University, Dorset, UK; hCentre for Environment, Fisheries & Aquaculture Science, Lowestoft, Suffolk, UK; iAECOM, Kitchener, Ontario, Canada; jOntario Ministry of Natural Resources and Forestry, Peterborough, Ontario, Canada; kDepartment of Zoology, Tel Aviv University and Inter-University Institute for Marine Sciences in Eilat, Tel Aviv, -
The Plankton Lifeform Extraction Tool: a Digital Tool to Increase The
Discussions https://doi.org/10.5194/essd-2021-171 Earth System Preprint. Discussion started: 21 July 2021 Science c Author(s) 2021. CC BY 4.0 License. Open Access Open Data The Plankton Lifeform Extraction Tool: A digital tool to increase the discoverability and usability of plankton time-series data Clare Ostle1*, Kevin Paxman1, Carolyn A. Graves2, Mathew Arnold1, Felipe Artigas3, Angus Atkinson4, Anaïs Aubert5, Malcolm Baptie6, Beth Bear7, Jacob Bedford8, Michael Best9, Eileen 5 Bresnan10, Rachel Brittain1, Derek Broughton1, Alexandre Budria5,11, Kathryn Cook12, Michelle Devlin7, George Graham1, Nick Halliday1, Pierre Hélaouët1, Marie Johansen13, David G. Johns1, Dan Lear1, Margarita Machairopoulou10, April McKinney14, Adam Mellor14, Alex Milligan7, Sophie Pitois7, Isabelle Rombouts5, Cordula Scherer15, Paul Tett16, Claire Widdicombe4, and Abigail McQuatters-Gollop8 1 10 The Marine Biological Association (MBA), The Laboratory, Citadel Hill, Plymouth, PL1 2PB, UK. 2 Centre for Environment Fisheries and Aquacu∑lture Science (Cefas), Weymouth, UK. 3 Université du Littoral Côte d’Opale, Université de Lille, CNRS UMR 8187 LOG, Laboratoire d’Océanologie et de Géosciences, Wimereux, France. 4 Plymouth Marine Laboratory, Prospect Place, Plymouth, PL1 3DH, UK. 5 15 Muséum National d’Histoire Naturelle (MNHN), CRESCO, 38 UMS Patrinat, Dinard, France. 6 Scottish Environment Protection Agency, Angus Smith Building, Maxim 6, Parklands Avenue, Eurocentral, Holytown, North Lanarkshire ML1 4WQ, UK. 7 Centre for Environment Fisheries and Aquaculture Science (Cefas), Lowestoft, UK. 8 Marine Conservation Research Group, University of Plymouth, Drake Circus, Plymouth, PL4 8AA, UK. 9 20 The Environment Agency, Kingfisher House, Goldhay Way, Peterborough, PE4 6HL, UK. 10 Marine Scotland Science, Marine Laboratory, 375 Victoria Road, Aberdeen, AB11 9DB, UK. -
Parasitic and Fungal Identification in Bamboo Lobster Panulirus Versicolour and Ornate Lobster P
Parasitic and Fungal Identification in Bamboo Lobster Panulirus versicolour and Ornate Lobster P. ornatus Cultures Indriyani Nur1)* and Yusnaini2) 1) Department of Aquaculture, Faculty of Fisheries and Marine Science, University of Halu Oleo, Kendari 93232, Indonesia Corresponding author: [email protected] (Indriyani Nur) Abstract—Lobster cultures have failed because of mortalities transmissible [5] including Vibrio, Aeromonas, Pseudomonas, associated with parasitic and fungal infections. Monitoring of spawned Cytophaga and Pseudoalteromonas [6,7]. Futher examination eggs and larva of bamboo lobsters, Panulirus versicolour, and ornate of these lobsters revealed four parasite species: Porospora lobsters, P. ornatus, in a hatchery was conducted in order to gigantea (Apicomplexa: Sporozoea), Polymorphus botulus characterize fungal and parasitic diseases of eggs and larva. One (Acanthocephala: Palaeacanthocephala), Hysterothylacium sp. species of protozoan parasite (Vorticella sp.) was identified from eggs while two species of fungi (Lagenidium sp. and Haliphthoros sp.) were (Nematoda: Secernentea), and Stichocotyle nephropis found on the lobster larvae. Furthermore, adult lobsters cultured in (Platyhelminthes: Trematoda) [8]. Therefore, the aim of this floating net cages had burning-like diseases on their pleopod, uropod, study was to examine and to characterize the infestation of and telson. Histopathological samples were collected for parasite parasites and fungus of potentially cultured lobsters (larval identification and tissue changes. There were two parasites found to stages and adult stages of the spiny lobsters), and also to look infect spiny lobsters on their external body and gill, they are Octolasmis sp. and Oodinium sp..Histopathology showed tissue at the histopathological changes of their tissues. This is changes, necrosis on the kidneys/liver/pancreas, necrosis in the gills regarded as a major cause of low production in aquaculture and around the uropods and telson. -
Ecophysiology of the Brine Dinoflagellate, Polarella Glacialis
Ecophysiology of the brine dinoflagellate, Po/are/la glacialis, and Antarctic Fast Ice Brine Communities by o-<cl. <?~(:;:;V Paul Thomson B.App.Sci. Grad.Dip ASOS (Hons) ADARM Submitted in fulfilment of the requirements for the degree of Doctor of Philosophy Institute of Antarctic and Southern Ocean Studies University of Tasmania Hobart February,2000 Declaration This is to certify that the material composing this thesis has never been accepted for any other degree or award in any other tertiary institution and, to the best of my knowledge and belief, is soley the work of the author, and contains no material previously published or written by another person, except where due reference is made in the text. Paul Gerard Thomson Authority of Access This thesis may be made available for loan and limited copying in accordance with the Copyright Act 1968. ~ Paul Gerard Thomson ·' i Abstract Extremes in salinity and temperature and high levels of incident ultraviolet radiation (UVR) characterise the brine pockets and channels of upper Antarctic fast ice. Data on the composition and distribution of the microbial community inhabiting this environment is limited. Furthermore, how this community tolerates the immoderate physical and chemical parameters of the upper ice brine is poorly understood. The microbial community in the Davis upper fast ice consists of cryo- and halotolerant autotrophic flagellates, a few diatoms, one ciliate species and several heterotrophic species. Small autotrophic dinoflagellates and chrysophytes dominate a community containing greater flagellate diversity than previously reported. A cryptomonad and two species of Pyramimonas are reported for the first time. The abundant dinoflagellate of Davis fast ice, identified using molecular taxonomy, is Polarella glacialis Montresor et al. -
Screening Snake Venoms for Toxicity to Tetrahymena Pyriformis Revealed Anti-Protozoan Activity of Cobra Cytotoxins
toxins Article Screening Snake Venoms for Toxicity to Tetrahymena Pyriformis Revealed Anti-Protozoan Activity of Cobra Cytotoxins 1 2 3 1, Olga N. Kuleshina , Elena V. Kruykova , Elena G. Cheremnykh , Leonid V. Kozlov y, Tatyana V. Andreeva 2, Vladislav G. Starkov 2, Alexey V. Osipov 2, Rustam H. Ziganshin 2, Victor I. Tsetlin 2 and Yuri N. Utkin 2,* 1 Gabrichevsky Research Institute of Epidemiology and Microbiology, ul. Admirala Makarova 10, Moscow 125212, Russia; fi[email protected] 2 Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, ul. Miklukho-Maklaya 16/10, Moscow 117997, Russia; [email protected] (E.V.K.); damla-sofi[email protected] (T.V.A.); [email protected] (V.G.S.); [email protected] (A.V.O.); [email protected] (R.H.Z.); [email protected] (V.I.T.) 3 Mental Health Research Centre, Kashirskoye shosse, 34, Moscow 115522, Russia; [email protected] * Correspondence: [email protected] or [email protected]; Tel.: +7-495-3366522 Deceased. y Received: 10 April 2020; Accepted: 13 May 2020; Published: 15 May 2020 Abstract: Snake venoms possess lethal activities against different organisms, ranging from bacteria to higher vertebrates. Several venoms were shown to be active against protozoa, however, data about the anti-protozoan activity of cobra and viper venoms are very scarce. We tested the effects of venoms from several snake species on the ciliate Tetrahymena pyriformis. The venoms tested induced T. pyriformis immobilization, followed by death, the most pronounced effect being observed for cobra Naja sumatrana venom. The active polypeptides were isolated from this venom by a combination of gel-filtration, ion exchange and reversed-phase HPLC and analyzed by mass spectrometry. -
Of a Eukaryote, Tetrahymena Pyriformis (Evolution of Repeated Genes/Amplification/DNA RNA Hybridization/Maero- and Micronuclei) MENG-CHAO YAO, ALAN R
Proc. Nat. Acad. Sci. USA Vol. 71, No. 8, pp. 3082-3086, August 1974 A Small Number of Cistrons for Ribosomal RNA in the Germinal Nucleus of a Eukaryote, Tetrahymena pyriformis (evolution of repeated genes/amplification/DNA RNA hybridization/maero- and micronuclei) MENG-CHAO YAO, ALAN R. KIMMEL, AND MARTIN A. GOROVSKY Department of Biology, University of Rochester, Rochester, New York 14627 Communicated by Joseph G. Gall, May 31, 1974 ABSTRACT The percentage of DNA complementary repeated sequences (5, 8). To our knowledge, little evidence to 25S and 17S rRNA has been determined for both the exists to support any of these hypotheses. macro- and micronucleus of the ciliated protozoan, Tetra- hymena pyriformis. Saturation levels obtained by DNA - The micro- and macronuclei of the ciliated protozoan, RNA hybridization indicate that approximately 200 Tetrdhymena pyriformis are analogous to the germinal and copies of the gene for rRNA per haploid genome were somatic nuclei of higher eukaryotes. While both nuclei are present in macronuclei. The saturation level obtained derived from the same zygotic nucleus during conjugation, with DNA extracted from isolated micronuclei was only the genetic continuity of 5-10% of the level obtained with DNA from macronuclei. only the micronucleus maintains After correction for contamination of micronuclear DNA this organism. The macronucleus is responsible for virtually by DNA from macronuclei, only a few copies (possibly all of the transcriptional activity during growth and division only 1) of the gene for rRNA are estimated to be present in and is capable of dividing an indefinite number of times during micronuclei. Micronuclei are germinal nuclei.