Patch Diseases of Turfgrass Caused by Ectotrophic Fungi Are Difficult to Control
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Genetic and Pathogenic Differences Between Microdochium Nivale and Microdochium Majus
Genetic and Pathogenic Differences Between Microdochium nivale and Microdochium majus by Linda Elizabeth Jewell A Thesis Presented to The University of Guelph In partial fulfilment of requirements for the degree of Doctor of Philosophy in Environmental Science Guelph, Ontario, Canada © Linda Elizabeth Jewell, December, 2013 ABSTRACT GENETIC AND PATHOGENIC DIFFERENCES BETWEEN MICRODOCHIUM NIVALE AND MICRODOCHIUM MAJUS Linda Elizabeth Jewell Advisor: University of Guelph, 2013 Professor Tom Hsiang Microdochium nivale and M. majus are fungal plant pathogens that cause cool-temperature diseases on grasses and cereals. Nucleotide sequences of four genetic regions were compared between isolates of M. nivale and M. majus from Triticum aestivum (wheat) collected in North America and Europe and for isolates of M. nivale from turfgrasses from both continents. Draft genome sequences were assembled for two isolates of M. majus and two of M. nivale from wheat and one from turfgrass. Dendograms constructed from these data resolved isolates of M. majus into separate clades by geographic origin. Among M. nivale, isolates were instead resolved by host plant species. Amplification of repetitive regions of DNA from M. nivale isolates collected from two proximate locations across three years grouped isolates by year, rather than by location. The mating-type (MAT1) and associated flanking genes of Microdochium were identified using the genome sequencing data to investigate the potential for these pathogens to produce ascospores. In all of the Microdochium genomes, and in all isolates assessed by PCR, only the MAT1-2-1 gene was identified. However, unpaired, single-conidium-derived colonies of M. majus produced fertile perithecia in the lab. -
The Pentose Catabolic Pathway of the Rice-Blast Fungus Magnaporthe Oryzae Involves a Novel Pentose Reductase Restricted to Few Fungal Species
FEBS Letters 587 (2013) 1346–1352 journal homepage: www.FEBSLetters.org The pentose catabolic pathway of the rice-blast fungus Magnaporthe oryzae involves a novel pentose reductase restricted to few fungal species Sylvia Klaubauf a,c, Cecile Ribot b,c,1, Delphine Melayah b,c, Arnaud Lagorce b,c,2, Marc-Henri Lebrun c,d, ⇑ Ronald P. de Vries a,c,e, a CBS-KNAW Fungal Biodiversity Centre, Utrecht, The Netherlands b Bayer Cropscience, Lyon, France c MPA, UMR 2847 CNRS, Bayer Crop Science, Lyon, France d BIOGER, UR 1290 INRA, Thiverval-Grignon, France e Microbiology & Kluyver Centre for Genomics of Industrial Fermentation, Utrecht, The Netherlands article info abstract Article history: A gene (MoPRD1), related to xylose reductases, was identified in Magnaporthe oryzae. Recombinant Received 18 February 2013 MoPRD1 displays its highest specific reductase activity toward L-arabinose and D-xylose. Km and Vmax Accepted 2 March 2013 values using L-arabinose and D-xylose are similar. MoPRD1 was highly overexpressed 2–8 h after Available online 13 March 2013 transfer of mycelium to D-xylose or L-arabinose, compared to D-glucose. Therefore, we conclude that MoPDR1 is a novel pentose reductase, which combines the activities and expression patterns of fun- Edited by Judit Ovadi gal L-arabinose and D-xylose reductases. Phylogenetic analysis shows that PRD1 defines a novel fam- ily of pentose reductases related to fungal D-xylose reductases, but distinct from fungal L-arabinose Keywords: reductases. The presence of PRD1, L-arabinose and D-xylose reductases encoding genes in a given Pentose catabolism Pentose reductase species is variable and likely related to their life style. -
© 2019 Austin Lee Grimshaw All Rights Reserved
© 2019 AUSTIN LEE GRIMSHAW ALL RIGHTS RESERVED EVALUATION AND BREEDING OF FINE FESCUES FOR LOW MAINTENANCE APPLICATIONS by AUSTIN LEE GRIMSHAW A dissertation submitted to the School of Graduate Studies Rutgers, The State University of New Jersey In partial fulfillment of the requirements For the degree of Doctor of Philosophy Graduate Program in Plant Biology Written under the direction of Stacy A. Bonos And approved by New Brunswick, New Jersey May, 2019 ABSTRACT OF THE DISSERTATION EVALUATION AND BREEDING OF FINE FESCUES FOR LOW MAINTENANCE APPLICATIONS by AUSTIN LEE GRIMSHAW Dissertation Director: Stacy A. Bonos Fine fescues (Festuca spp.) are being bred for low-maintenance turfgrass applications. One of the major limitations to the widespread use of fine fescue is summer patch susceptibility and traffic tolerance. Magnaporthiopsis poae (Landschoot & Jackson), is the long known causal organism of summer patch, however recent research has found a new species, Magnaporthiopsis meyeri-festucae (Luo & Zhang) from the diseased roots of fine fescue turfgrasses exhibiting summer patch symptoms. Breeding for improved tolerance to summer patch is critical but in order to do so a better understanding of the pathogen(s) is necessary. During 2017 and 2018, isolates of M. meyeri-festucae were compared to isolates of M. poae through plant-fungal interaction in growth chamber experiments and in vitro fungicide sensitivity assays with penthiopyrad, azoxystrobin, and metconazole. In the plant-fungal interaction experiments, M. poae was shown to exhibit higher levels of virulence than M. meyeri-festucae; however, certain isolates of the two species were ranked equal. In the fungicide sensitivity assays, an isolate of M. -
The Environmental Fate of Fungicides Used to Manage Magnaporthe Poae, the Causal Agent of Summer Patch
University of Massachusetts Amherst ScholarWorks@UMass Amherst Masters Theses 1911 - February 2014 1998 The environmental fate of fungicides used to manage Magnaporthe poae, the causal agent of summer patch / Jeffery J. Doherty University of Massachusetts Amherst Follow this and additional works at: https://scholarworks.umass.edu/theses Doherty, Jeffery J., "The environmental fate of fungicides used to manage Magnaporthe poae, the causal agent of summer patch /" (1998). Masters Theses 1911 - February 2014. 3468. Retrieved from https://scholarworks.umass.edu/theses/3468 This thesis is brought to you for free and open access by ScholarWorks@UMass Amherst. It has been accepted for inclusion in Masters Theses 1911 - February 2014 by an authorized administrator of ScholarWorks@UMass Amherst. For more information, please contact [email protected]. THE ENVIRONMENTAL FATE OF FUNGICIDES USED TO MANAGE MAGNAPORTHE POAE, THE CAUSAL AGENT OF SUMMER PATCH A Thesis Presented by JEFFERY J. DOHERTY Submitted to the Graduate School of the University of Massachusetts Amherst in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE May 1998 Department of Plant Pathology THE ENVIRONMENTAL FATE OF FUNGICIDES USED TO MANAGE MAGNAPORTHE POAE, THE CAUSAL AGENT OF SUMMER PATCH A Thesis Presented by JEFFERY J. DOHERTY Approved as to style and content by: Gail L. Schumann, Chair Mark S. Mount, Member oJ* John M. Clark, Member Bruce B. Clarke, Member Mark S. Mount, Department Head Plant Pathology ACKNOWLEDGMENTS A Masters thesis is actually the end product of the work of many people. I would like to thank Michael Johnson, Dwight Jesseman, Bess Dicklow, Lori Bickford, Tania Fernandez and Sharon Sousa for assisting me in the laborious task of preparing samples. -
Cellular Dynamics and Genomic Identity of Centromeres in the Cereal Blast Fungus
bioRxiv preprint doi: https://doi.org/10.1101/475574; this version posted January 20, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Cellular Dynamics and Genomic Identity of Centromeres in the Cereal Blast Fungus 2 3 Vikas Yadav1¶,#a, Fan Yang2¶, Md. Hashim Reza1, Sanzhen Liu3, Barbara Valent3, Kaustuv 1* 2* 4 Sanyal , Naweed I. Naqvi 5 6 1Molecular Biology and Genetics Unit, Jawaharlal Nehru Centre for Advanced Scientific 7 Research, Jakkur, Bangalore, India 8 2Temasek Life Sciences Laboratory, and Department of Biological Sciences, 1 Research Link, 9 Singapore 10 3Department of Plant Pathology, Kansas State University, Manhattan, KS, USA 11 #aCurrent address: Department of Molecular Genetics and Microbiology, Duke University 12 Medical Center, Durham, NC, USA 13 14 * Corresponding authors: 15 E-mail: [email protected] (NIN); [email protected] (KS) 16 17 ¶These authors contributed equally to this work. 18 19 Running title: Centromeres in M. oryzae. 1 bioRxiv preprint doi: https://doi.org/10.1101/475574; this version posted January 20, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 20 Abstract 21 A series of well-synchronized events mediated by kinetochore-microtubule interactions ensure 22 faithful chromosome segregation in eukaryotes. Centromeres scaffold kinetochore assembly and 23 are among the fastest evolving chromosomal loci in terms of the DNA sequence, length, and 24 organization of intrinsic elements. Neither the centromere structure nor the kinetochore dynamics 25 is well studied in plant pathogenic fungi. -
Summer Patch: Magnaporthe Poae
Plant Disease Diagnostic Clinic ol Cornell University Plant Pathology and - • College of Agriculture and Life Sciences Plant‐Microbe Biology Section I) 334 Plant Science Building Ithaca, NY 14853‐5904 Summer Patch: Magnaporthe poae Introduction Kentucky bluegrass (Poa pratensis), annual bluegrass (Poa annua), and fescues (Festuca sp.) can be affected during the summer by an interaction of environmental factors and a root and/or crown rot caused by the fungus Magnaporthe poae. This diseases is known as Summer Patch. Bentgrasses (Agrostis sp.) may also become infected but show few symptoms and may continue to perform where other grasses decline. Summer Patch occurs between June and Figure 1: Symptoms of a Summer Patch infecƟon (provided September. This disease, in combination with by Dr. Eric B. Nelson, Cornell University) another disease now known as Necrotic Ring Spot were once grouped together into a disease complex In rarer circumstances, they may get to be twice known as Fusarium Blight. The high level of that size. As patches enlarge, they may coalesce, and difficulty involved in clinical evaluations of form crescents of yellow or tan turf. Where turf Leptosphaeria korrae, Magnaporthe poae, and within the center of a patch begins to recover, related fungi, and the extreme ease of isolation of necrotic rings may become evident. As Necrotic decomposer fungi such as Fusarium species, Ring Spot may exhibit similar symptoms, originally led to the mis-naming. Eventually, these microscopic examination is often necessary to organisms and their symptoms were separated out determine the cause of the problem. The roots, into the diseases now known as Necrotic Ring Spot crowns and stolons of infected plants may appear and Summer Patch. -
S43021927 Phd Thesis.Pdf
Plant pathogenic Magnaporthales in Australia, with particular reference to Pyricularia oryzae on wild and cultivated rice Wanporn Khemmuk Master of Science (Plant Pathology) A thesis submitted for the degree of Doctor of Philosophy at The University of Queensland in 2016 Queensland Alliance for Agriculture and Food Innovation 1 Abstract The Magnaporthales is an order of fungi that contains plant pathogens and saprobes. This order consists of three families, Pyriculariaceae, Magnaporthaceae and Ophioceraceae, which are phylogenetically, morphologically and ecologically distinct. To date, about 200 species have been described in Magnaporthales, of which approximately 50% are plant pathogens. Some species are important pathogens of grasses and cereals such as the rice blast fungus Pyricularia oryzae (syn. Magnaporthe oryzae) and the take-all pathogen of cereals Gaeumannomyces graminis. The study of classification and identification of Magnaporthales in Australia and pathogenicity of Pyricularia oryzae are reported in this thesis. The genus Pyricularia comprises species that cause blast diseases on various hosts, especially grasses (Poaceae) that include crops such as rice, wheat, barley and grasses. This study used morphology, phylogenetic concordance, ecology and pathogenicity, to study Pyricularia and allied genera in the Magnaporthales. The fungi associated with blast diseases on eleven monocot hosts in Australia were identified by morphological characters and DNA sequence analysis in Chapter 2. Three species of Pyricularia, namely, Pyricularia angulata, Pyricularia pennisetigena and Pyricularia oryzae, were confirmed as present in Australia. Another species, Pyricularia rabaulensis was found to belong to a recently established genus Barretomyces. A formal transfer of this fungus to Barretomyces has been proposed. In Chapter 3, the phylogenetic relationships of some other Australian Magnaporthe-like fungi were investigated based on morphology and DNA sequence analysis of multiple genes. -
Comparative Genome Analysis and Genome Evolution of Members of the Magnaporthaceae Family of Fungi Laura H
Okagaki et al. BMC Genomics (2016) 17:135 DOI 10.1186/s12864-016-2491-y RESEARCH ARTICLE Open Access Comparative genome analysis and genome evolution of members of the magnaporthaceae family of fungi Laura H. Okagaki1,3, Joshua K. Sailsbery1,2, Alexander W. Eyre1,3 and Ralph A. Dean1,3* Abstract Background: Magnaporthaceae, a family of ascomycetes, includes three fungi of great economic importance that cause disease in cereal and turf grasses: Magnaporthe oryzae (rice blast), Gaeumannomyces graminis var. tritici (take- all disease), and Magnaporthe poae (summer patch disease). Recently, the sequenced and assembled genomes for these three fungi were reported. Here, the genomes were compared for orthologous genes in order to identified genes that are unique to the Magnaporthaceae family of fungi. In addition, ortholog clustering was used to identify a core proteome for the Magnaporthaceae, which was examined for diversifying and purifying selection and evidence of two-speed genome evolution. Results: A genome-scale comparative study was conducted across 74 fungal genomes to identify clusters of orthologous genes unique to the three Magnaporthaceae species as well as species specific genes. We found 1149 clusters that were unique to the Magnaporthaceae family of fungi with 295 of those containing genes from all three species. Gene clusters involved in metabolic and enzymatic activities were highly represented in the Magnaporthaceae specific clusters. Also highly represented in the Magnaporthaceae specific clusters as well as in the species specific genes were transcriptional regulators. In addition, we examined the relationship between gene evolution and distance to repetitive elements found in the genome. No correlations between diversifying or purifying selection and distance to repetitive elements or an increased rate of evolution in secreted and small secreted proteins were observed. -
Ascomycota: Sordariomycetes)
Mycosphere 7 (11): 1746–1761 (2016) www.mycosphere.org ISSN 2077 7019 Article – special issue Doi 10.5943/mycosphere/7/11/9 Copyright © Guizhou Academy of Agricultural Sciences Evolution of Xylariomycetidae (Ascomycota: Sordariomycetes) Samarakoon MC1,2,3, Hyde KD1,3*, Promputtha I2, Hongsanan S1, Ariyawansa HA4, Maharachchikumbura SSN5, Daranagama DA1,6, Stadler M7,8, Mapook A1,3 1Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 2Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand 3Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, 132 Lanhei Road, Kunming 650201, China 4Guizhou Academy of Sciences, Guiyang, 550009, Guizhou Province, China 5Department of Crop Sciences, College of Agricultural and Marine Sciences, Sultan Qaboos University, P.O. Box 34, Al-Khod 123, Oman 6State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China 7Department Microbial Drugs, Helmholtz-Zentrum für Infektionsforschung GmbH, Inhoffenstrasse 7, 38124 Braunschweig, Germany 8German Centre for Infection Research (DZIF), Partner Site Hannover-Braunschweig, 38124 Braunschweig, Germany Samarakoon MC, Hyde KD, Promputtha I, Hongsanan S, Ariyawansa HA, Maharachchikumbura SSN, Daranagama DA, Stadler M, Mapook A. 2016 – Evolution of Xylariomycetidae (Ascomycota: Sordariomycetes). Mycosphere 7 (11), 1746–1761, Doi 10.5943/mycosphere/7/11/9 Abstract The class Sordariomycetes, which is the second largest class in the phylum Ascomycota, comprises highly diversified fungal groups, with relatively high substitution and evolutionary rates. In this preliminary study, divergence estimates of taxa of Xylariomycetidae are calculated using Ophiocordyceps fossil evidence and secondary data. -
Towards a Natural Classification of Amplistromataceae
Mycosphere 8(9): 1392–1402 (2017) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/8/9/6 Copyright © Guizhou Academy of Agricultural Sciences Towards a natural classification of Amplistromataceae Daranagama DA1,2, Tian Q2, Liu XZ1 and Hyde KD2 1 State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, No 31 st West Beichen Road, Chaoyang District, Beijing, 100101, People’s Republic of China. 2 Centre of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand. Daranagama DA, Tian Q, Liu XZ, Hyde KD 2017 – Towards a natural classification of Amplistromataceae. Mycosphere 8(9), 1392–1402, Doi 10.5943/mycosphere/8/9/6 Abstract In this study, we revise the family Amplistromataceae (Amplistromatales) based on DNA sequence data derived from living cultures and morphological observation of type and additional specimens from herbaria worldwide. Combined analyses of ITS and LSU sequence data were used to reconstruct phylogenetic relationships of members for the family. We accept three genera; Acidothrix, Amplistroma and Wallrothiella in Amplistromataceae based on the morphology and phylogeny. Modern descriptions and illustrations are provided with notes and a key to the genera is provided. Key words – Amplistromatales – Ascomycetes – phylogeny – taxonomy Introduction Three genera are included in Amplistromataceae, namely Acidothrix Hujslová & M. Kolařík, Amplistroma Huhndorf et al. and Wallrothiella Sacc. Wallrothiella was re-described by Réblová and Seifert (2004) along with neotypification of its type species Wallrothiella congregata (Wallr.) Sacc. Amplistroma has been segregated from Wallrothiella on the basis of presence of stromatic ascomata. While Amplistroma is stromatic, Wallrothiella does not possess stromatic ascomata. -
Epidemiology, Virulence and Molecular Diversity in Blast [Magnaporthe Grisea (Hebert) Barr.] of Pearl Millet [Pennisetum Glaucum (L.) R
“Epidemiology, virulence and molecular diversity in blast [Magnaporthe grisea (Hebert) Barr.] of pearl millet [Pennisetum glaucum (L.) R. Br.] and resistance in the host to diverse pathotypes” T. YELLA GOUD M.Sc. (Ag) DOCTOR OF PHILOSOPHY IN AGRICULTURE (PLANT PATHOLOGY) 2015 CERTIFICATE Mr T. YELLA GOUD has satisfactorily prosecuted the course of research and that the thesis entitled “Epidemiology and virulence diversity in blast [Magnaporthe grisea (Hebert) Barr.] of pearl millet [Pennisetum glaucum (L.) R. Br.] and resistance in the host to diverse pathotypes” submitted is the result of original research work and is of sufficiently high standard to warrant its presentation to the examination. I also certify that the thesis nor its part thereof has not been previously submitted by him for a degree of any university. Date: Chairperson CERTIFICATE This is to certify that the thesis entitled “Epidemiology and virulence diversity in blast [Magnaporthe grisea (Hebert) Barr.] of pearl millet [Pennisetum glaucum (L.) R. Br.] and resistance in the host to diverse pathotypes” submitted in partial fulfillment of the requirements for the degree of „Doctor of Philosophy in Agriculture‟ of the Professor Jayashankar Telangana State Agricultural University, Hyderabad is a record of the bonafide original research work carried out by Mr. T. YELLA GOUD under our guidance and supervision. No part of the thesis has been submitted by the student for any other degree or diploma. The published part and all assistance received during the course of the investigations have been duly acknowledged by the author of the thesis. Thesis approved by the Student Advisory Committee Chairperson : Dr. -
AR TICLE Wongia Gen. Nov. (Papulosaceae, Sordariomycetes
IMA FUNGUS · 7(2): 247–252 (2016) P'=++*9Q#"/='U=>=/=? Wongia gen. nov. (Papulosaceae, Sordariomycetes), a new generic name ARTICLE for two root-infecting fungi from Australia {1,2G5]"1,2j"]J2,3 1¡G#G"M_7#¡X]<OE/U>O ¡?=='G 2O\j\q<OE+='/OG\7/U'>G 3"&5#G"MX5?'=/GZ" LP"¨#" Abstract: 7[#L#"#"Magnaporthe garrettii and ![, was examined Key words: " # " 7 M. garrettii and M. Ascomycota [ were sister species that formed a well-supported separate clade in Papulosaceae (Diaporthomycetidae, Cynodon Sordariomycetes), which clusters outside of the Magnaporthales. Wongia gen. nov, is established to Diaporthomycetidae [Magnaporthe nor multigene analysis to other genera, including Nakataea, Magnaporthiopsis and Pyricularia, which all now contain other species one fungus-one name [Magnaporthe. molecular phylogenetics root pathogens Article info:JP+K/='UZGP></='UZP''</='U INTRODUCTION species, ![#{#et al. (2014) to be distant from Sordariomycetes _7J The taxonomic and nomenclatural problems that surround !]OK¡;*=;''K¡;*=;'/$ generic names in the Magnaporthales (Sordariomycetes, 7[#M. garrettii Ascomycota), together with recommendations for the and !["# suppression and protection of some of these names, were M#"_7J$ explained by the Pyricularia/Magnaporthe Working Group "!qJ$#5DG" established under the auspices of the International Commission # 'L !7XM'$ " # jDG on the Taxonomy of Fungi (ICTF; Zhang et al. 2016). One polymerase II (RPB1) were selected for analysis. of these generic names, Magnaporthe, was proposed for suppression by Zhang et