Characterization and Electron Microscopy of a Potyvirus Infecting Commelina Diffusa F
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Cucumber Mosaic Virus in Hawai‘I
Plant Disease August 2014 PD-101 Cucumber Mosaic Virus in Hawai‘i Mark Dragich, Michael Melzer, and Scot Nelson Department of Plant Protection and Environmental Protection Sciences ucumber mosaic virus (CMV) is Pathogen one of the most widespread and The pathogen causing cucumber troublesomeC viruses infecting culti- mosaic disease(s) is Cucumber mo- vated plants worldwide. The diseases saic cucumovirus (Roossinck 2002), caused by CMV present a variety of although it is also known by other global management problems in a names, including Cucumber virus 1, wide range of agricultural and ecologi- Cucumis virus 1, Marmor cucumeris, cal settings. The elevated magnitude Spinach blight virus, and Tomato fern of risk posed by CMV is due to its leaf virus (Ferreira et al. 1992). This broad host range and high number of plant pathogen is a single-stranded arthropod vectors. RNA virus having three single strands Plant diseases caused by CMV of RNA per virus particle (Ferreira occur globally. Doolittle and Jagger et al. 1992). CMV belongs to the first reported the characteristic mosaic genus Cucumovirus of the virus symptoms caused by the virus in 1916 family Bromoviridae. There are nu- on cucumber. The pandemic distribu- merous strains of CMV that vary in tion of cucumber mosaic, coupled with their pathogenicity and virulence, as the fact that it typically causes 10–20% well as others having different RNA yield loss where it occurs (although it Mosaic symptoms associated with satellite virus particles that modify can cause 100% losses in cucurbits) Cucumber mosaic virus on a nau- pathogen virulence and plant disease makes it an agricultural disease of paka leaf. -
Aphid Transmission of Potyvirus: the Largest Plant-Infecting RNA Virus Genus
Supplementary Aphid Transmission of Potyvirus: The Largest Plant-Infecting RNA Virus Genus Kiran R. Gadhave 1,2,*,†, Saurabh Gautam 3,†, David A. Rasmussen 2 and Rajagopalbabu Srinivasan 3 1 Department of Plant Pathology and Microbiology, University of California, Riverside, CA 92521, USA 2 Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC 27606, USA; [email protected] 3 Department of Entomology, University of Georgia, 1109 Experiment Street, Griffin, GA 30223, USA; [email protected] * Correspondence: [email protected]. † Authors contributed equally. Received: 13 May 2020; Accepted: 15 July 2020; Published: date Abstract: Potyviruses are the largest group of plant infecting RNA viruses that cause significant losses in a wide range of crops across the globe. The majority of viruses in the genus Potyvirus are transmitted by aphids in a non-persistent, non-circulative manner and have been extensively studied vis-à-vis their structure, taxonomy, evolution, diagnosis, transmission and molecular interactions with hosts. This comprehensive review exclusively discusses potyviruses and their transmission by aphid vectors, specifically in the light of several virus, aphid and plant factors, and how their interplay influences potyviral binding in aphids, aphid behavior and fitness, host plant biochemistry, virus epidemics, and transmission bottlenecks. We present the heatmap of the global distribution of potyvirus species, variation in the potyviral coat protein gene, and top aphid vectors of potyviruses. Lastly, we examine how the fundamental understanding of these multi-partite interactions through multi-omics approaches is already contributing to, and can have future implications for, devising effective and sustainable management strategies against aphid- transmitted potyviruses to global agriculture. -
Identification of Zinnia Leaf Curl Virus Infecting Zinnia Elegans in India
ISABB Journal of Biotechnology and Bioinformatics Vol. 2(1), pp. 6-10, April 2012 Available online at http://www.isabb.academicjournals.org/JBB DOI: 10.5897/ISAAB-JBB12.001 ISSN 1937-3244©2012 Academic Journals Full Length Research Paper Identification of Zinnia leaf curl virus infecting Zinnia elegans in India NAVEEN PANDAY1 and A. K. TIWARI2* 1Department of Botany, DDU University Gorakhpur, Uttar Pradesh, UP, -273008 India. 2Central Laboratory, U P Council of Sugarcane Research, Shahjahnapur-242001, Uttar Pradesh, India. Accepted 26 March, 2012 In a survey during 2007 to 2009 at Gorakhpur and nearby locations of North Eastern Uttar Pradesh, India leaf curling, foliar deformation and distortion symptoms were observed on Zinnia elegans plants. The associated White fly population indicated the possible presence of begomovirus in the field. Therefore, Polymerase chain reaction (PCR) was performed with the begomovirus specific primers (TLCV-CP). Total genomic DNA was isolated from infected as well as healthy leaf samples. In gel electrophoresis expected ~500 bp amplicons was obtained in symptomatic leaf sample while, no amplicon was found in healthy leaf samples. Amplicon obtained were directly sequenced and submitted in the GenBank (GQ412352) and phylogeny were constructed with the available identical sequences in the Genbank. Based on the highest similarity 97% at nucleotide and 99% at amino acid level and closest relationship with isolates of Zinnia leaf curl virus, the present study isolate was considered an isolate of Zinnia leaf curl virus. Key words: Zinnia elegans, Zinnia leaf curl virus, polymerase chain reaction (PCR), phylogenetic analysis. INTRODUCTION Zinnia is a common Mexican wildflower and members of reported virus on Zinnia (Storey, 1931). -
Insect Transmitted Viruses of Grains CP
INDUSTRY BIOSECURITY PLAN FOR THE GRAINS INDUSTRY Generic Contingency Plan Sap-sucking insect transmitted viruses affecting the grains industry Specific examples detailed in this plan: Peanut Stripe Virus (Potyvirus), Chickpea Chlorotic Dwarf Virus (Geminivirus) and Chickpea Chlorotic Stunt Virus (Polerovirus) Plant Health Australia May 2014 Disclaimer The scientific and technical content of this document is current to the date published and all efforts have been made to obtain relevant and published information on the pest. New information will be included as it becomes available, or when the document is reviewed. The material contained in this publication is produced for general information only. It is not intended as professional advice on any particular matter. No person should act or fail to act on the basis of any material contained in this publication without first obtaining specific, independent professional advice. Plant Health Australia and all persons acting for Plant Health Australia in preparing this publication, expressly disclaim all and any liability to any persons in respect of anything done by any such person in reliance, whether in whole or in part, on this publication. The views expressed in this publication are not necessarily those of Plant Health Australia. Further information For further information regarding this contingency plan, contact Plant Health Australia through the details below. Address: Level 1, 1 Phipps Close DEAKIN ACT 2600 Phone: 61 2 6215 7700 Fax: 61 2 6260 4321 Email: [email protected] ebsite: www.planthealthaustralia.com.au An electronic copy of this plan is available from the web site listed above. © Plant Health Australia Limited 2014 Copyright in this publication is owned by Plant Health Australia Limited, except when content has been provided by other contributors, in which case copyright may be owned by another person. -
Common Weed Hosts of Insect-Transmitted Viruses of Florida Vegetable Crops1 Gaurav Goyal, Harsimran K
Archival copy: for current recommendations see http://edis.ifas.ufl.edu or your local extension office. Archival copy: for current recommendations see http://edis.ifas.ufl.edu or your local extension office. ENY-863 Common Weed Hosts of Insect-Transmitted Viruses of Florida Vegetable Crops1 Gaurav Goyal, Harsimran K. Gill, and Robert McSorley2 Weed growth can severely decrease the commercial, virus attacks bell pepper, tomato, spinach, cantaloupe, recreational, and aesthetic values of crops, landscapes, and cucumber, pumpkin, squash, celery, and watercress. waterways. More information on weeds can be found in References to appropriate publications are provided for Hall et al. (2009i). Other than affecting crop production easy cross-reference and more details about the virus by reducing the amount of nutrients available to the main under consideration. Common viruses with their family crop, weeds can also influence crop production by acting as and genus names are provided in Table 2. Information is reservoirs of various viruses that are transmitted by insects. also provided for each vegetable that was reported infected Several insects transmit different viruses in different crops, by the virus, and on the insect vectors that transmit the but aphids and whiteflies are among the most important virus. Some viruses, such as Tomato mosaic virus, are not virus vectors (carriers of viruses) on vegetable crops in transmitted by vectors. Others, such as Bean common Florida. The insect vectors feed on various parts of weeds mosaic virus, can be transmitted by vectors or through seed. that are infected by a virus and acquire the virus in the Detailed information about viruses and their transmission process. -
The Hcpro from the Potyviridae Family: an Enviable Multitasking Helper Component That Every Virus Would Like to Have
bs_bs_banner MOLECULAR PLANT PATHOLOGY (2018) 19(3), 744–763 DOI: 10.1111/mpp.12553 Review The HCPro from the Potyviridae family: an enviable multitasking Helper Component that every virus would like to have ADRIAN A. VALLI1,*, ARAIZ GALLO1 , BERNARDO RODAMILANS1 ,JUANJOSELOPEZ-MOYA 2 AND JUAN ANTONIO GARCIA 1,* 1Centro Nacional de Biotecnologıa (CNB-CSIC), Madrid 28049, Spain 2Center for Research in Agricultural Genomics (CRAG-CSIC-IRTA-UAB-UB), Campus UAB, Bellaterra, Barcelona 08193, Spain structure, RNA sequence and transmission vectors (Revers and SUMMARY Garcıa, 2015). Most potyvirids (i.e. viruses belonging to the RNA viruses have very compact genomes and so provide a Potyviridae family) have monopartite, single-stranded and unique opportunity to study how evolution works to optimize the positive-sense genomes of around 10 000 nucleotides that are use of very limited genomic information. A widespread viral encapsidated by multiple units of a single coat protein (CP) in flex- strategy to solve this issue concerning the coding space relies on uous and filamentous virus particles of 680–900 nm in length and the expression of proteins with multiple functions. Members of 11–14 nm in diameter (Kendall et al., 2008). Exceptionally, bymo- the family Potyviridae, the most abundant group of RNA viruses viruses are peculiar in this regard, as they have a bipartite genome in plants, offer several attractive examples of viral factors which that is encapsidated separately. Inside the infected cells, the viral play roles in diverse infection-related -
Biosystematic Studies on Commelinaceae (Commelinales) I
ISSN 1346-7565 Acta Phytotax. Geobot. 68 (3): 193–198 (2017) doi: 10.18942/apg.201710 Biosystematic Studies on Commelinaceae (Commelinales) I. Phylogenetic Analysis of Commelina in Eastern and Southeastern Asia * CHUNG-KUN LEE , SHIZUKA FUSE AND MINORU N. TAMURA Department of Botany, Graduate School of Science, Kyoto University, Kitashirakawa-oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan. *[email protected] (author for correspondence) Commelina, the pantropical and largest genus in Commelinaceae, consists of ca. 205 species with char- acteristic conduplicate involucral bracts. Previous phylogenetic studies of Commelina, which mainly used African and North American species, suggested that the ancestral character state of the margins of the involucral bracts of Commelina was free and that free to fused occurred only once. To test this evo- lutionary scenario, we performed parsimony and likelihood analyses with partial matK sequences using 25 individuals from 11 species of Commelina, primarily from eastern and southeastern Asia, with An- eilema and Pollia as outgroups. Results showed that Commelina comprises two major clades, one con- sisting of four species, and the other consisting of seven species. Species with free margins of the invo- lucral bracts were in both major clades: C. suffruticosa in the first clade and C. coelestis, C. communis, C. diffusa, C. purpurea and C. sikkimensis in the latter. The phylogenetic trees suggested that the number of shifts is fewer when the ancestral state was fused and that there were two parallel evolutionary trends toward free. Key words: Commelina, Commelina maculata, Commelina paludosa, Commelina suffruticosa, Com- melinaceae, involucral bracts, matK, maximum likelihood, maximum parsimony, phylogeny Commelina L., the largest genus of Com- na to be sister to a clade of Pollia Thunb., Poly- melinaceae Mirb. -
Molecular Analysis of Vanilla Mosaic Virus from the Cook Islands
Molecular Analysis of Vanilla mosaic virus from the Cook Islands Christopher Puli’uvea A thesis submitted to Auckland University of Technology in partial fulfilment of the requirements for the degree of Master of Science (MSc) 2017 School of Science I Abstract Vanilla was first introduced to French Polynesia in 1848 and from 1899-1966 was a major export for French Polynesia who then produced an average of 158 tonnes of cured Vanilla tahitensis beans annually. In 1967, vanilla production declined rapidly to a low of 0.6 tonnes by 1981, which prompted a nation-wide investigation with the aim of restoring vanilla production to its former levels. As a result, a mosaic-inducing virus was discovered infecting V. tahitensis that was distinct from Cymbidium mosaic virus (CyMV) and Odontoglossum ringspot virus (ORSV) but serologically related to dasheen mosaic virus (DsMV). The potyvirus was subsequently named vanilla mosaic virus (VanMV) and was later reported to infect V. tahitensis in the Cook Islands and V. planifolia in Fiji and Vanuatu. Attempts were made to mechanically inoculate VanMV to a number of plants that are susceptible to DsMV, but with no success. Based on a partial sequence analysis, VanMV-FP (French Polynesian isolate) and VanMV-CI (Cook Islands isolate) were later characterised as strains of DsMV exclusively infecting vanilla. Since its discovery, little information is known about how VanMV-CI acquired the ability to exclusively infect vanilla and lose its ability to infect natural hosts of DsMV or vice versa. The aims of this research were to characterise the VanMV genome and attempt to determine the molecular basis for host range specificity of VanMV-CI. -
(Commelina Diffusa) with the Fungal Pathogen Phoma Commelinicola
Agronomy 2015, 5, 519-536; doi:10.3390/agronomy5040519 OPEN ACCESS agronomy ISSN 2073-4395 www.mdpi.com/journal/agronomy Article Biological Control of Spreading Dayflower (Commelina diffusa) with the Fungal Pathogen Phoma commelinicola Clyde D. Boyette 1,*, Robert E. Hoagland 2 and Kenneth C. Stetina 1 1 USDA-ARS, Biological Control of Pests Research Unit, Stoneville, MS 38776, USA; E-Mail: [email protected] 2 USDA-ARS, Crop Production Systems Research Unit, Stoneville, MS 38776, USA; E-Mail: [email protected] * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +1-662-686-5217; Fax: +1-662-686-5281. Academic Editor: Rakesh S. Chandran Received: 23 June 2015 / Accepted: 27 October 2015 / Published: 30 October 2015 Abstract: Greenhouse and field experiments showed that conidia of the fungal pathogen, Phoma commelinicola, exhibited bioherbicidal activity against spreading dayflower (Commelina diffusa) seedlings when applied at concentrations of 106 to 109 conidia·mL−1. Greenhouse tests determined an optimal temperature for conidial germination of 25 °C –30 °C, and that sporulation occurred on several solid growth media. A dew period of ≥ 12 h was required to achieve 60% control of cotyledonary-first leaf growth stage seedlings when applications of 108 conidia·mL−1 were applied. Maximal control (80%) required longer dew periods (21 h) and 90% plant dry weight reduction occurred at this dew period duration. More efficacious control occurred on younger plants (cotyledonary-first leaf growth stage) than older, larger plants. Mortality and dry weight reduction values in field experiments were ~70% and >80%, respectively, when cotyledonary-third leaf growth stage seedlings were sprayed with 108 or 109 conidia·mL−1. -
PLANT DISEASES Caused by Viruses & Virus-Like Pathogens in the French Pacific Overseas Country of FRENCH POLYNESIA & the French Pacific Territory of WALLIS & FUTUNA
SPC Techncal Paper No. 226 Surveys for PLANT DISEASES caused by Vruses & Vrus-lke pathogens n the French Pacific Overseas Country of FRENCH POLYNESIA & the French Pacific territory of WALLIS & FUTUNA By R.I. DavisA, L. MuB, A. MalauC, P. JonesD A Plant Protection Service, Secretariat of the Pacific Community (SPC), PMB, Suva, Fiji Islands BService du Développement Rural, Département de la Protection des Végétaux, BP 100, Papeete, French Polynesia CService de l’agriculture à Wallis, Services Territoriaux des Affaires Rurales et de la Peche, BP 19, Mata’utu, 98600 Uvea, Wallis and Futuna Islands D Plant–Pathogen Interactions Division, Rothamsted Research, Harpenden, Hertfordshire, AL5 2JQ, UK Published with financial assistance from European Union SPC Land Resources Dvson Suva, Fj October 2006 © Copyright Secretariat of the Pacific Community 2006 All rights for commercial / for profit reproduction or translation, in any form, reserved. SPC authorizes the partial reproduction or translation of this material for scientific, educational or research purposes, provided that SPC and the source document are properly acknowledged. Permission to reproduce the document and/or translate in whole, in any form, whether for commercial / for profit or non-profit purposes, must be requested in writing. Original SPC artwork may not be altered or separately published without permission. Orgnal text : Englsh Secretariat of the Pacific Community Cataloguing-in-publication data Davs, R.I. et al. Surveys for plant diseases caused by viruses and virus-like pathogens in the French Pacific overseas country of French Polynesia and the French Pacific territory of Wallis and Futuna / R.I. Davis, L. Mu, A. Malau, P. -
200600069.Pdf
,i.;;. j 200600069 July 20, 2011 Plant Variety Protection Office NAL Building, Room 400 10301 Baltimore Blvd. Bettsville, MD 20705-2351 2cx:::k;oO()(og Subject: Response to - Chicory Application No~eestlOO~Chicory <TFI 200> (First Letter) Dear Mark A. Hermeling, Senior Plant Variety Examiner: The contents contained herein are in respectful response to your first letter of examination regarding Application No. 200500069, Chicory <TFI 200>. Extensive efforts have been made to clarify previously unaddressed or inadequately defended contentions. Information missing from the application, designated by your letter, has been entered, and the explicative exhibits have been revised and improved. As per my thorough conversations with Brenda Landis, I have aimed to elucidate our breeding program and analysis process to show that our methods produced true to form results, typical in range and deviation of existing Chicory varieties, while also showing that the results proved substantially contradistinctive when their averages were compared against Forage Feast Chicory. I have also completed a dedicated search to obtain all available information on existing varieties of forage Chicory. Using this information, I have distinguished TFI 200 from all other .forage varieties of common knowledge. I' would also like to clarify that when I submitted my initial application, a similar search was performed. The information I have used in my revisions was not readily available at that time. Additionally, the data set previously submitted in Exhibit C has been revised for legibility. Please let me know if you have any further questions or concerns regarding this revision. Thank you. Sincerely, Kevin R. Loe, Plant Variety Breeder Oregon Wholesale Seed Company Telephone: (503)-873-5190 Fax: (503)-873-8861 E-Mail: [email protected] ~------~------!!!!!!!-~~IIII,--- _ 200600069 Form Approved - 0M BNo. -
Solanum Viarum
Solanum viarum INTRODUCTORY DISTRIBUTION AND OCCURRENCE BOTANICAL AND ECOLOGICAL CHARACTERISTICS FIRE EFFECTS AND MANAGEMENT MANAGEMENT CONSIDERATIONS APPENDIX: FIRE REGIME TABLE REFERENCES AUTHORSHIP AND CITATION FEIS ABBREVIATION NRCS PLANT CODE COMMON NAMES TAXONOMY SYNONYMS LIFE FORM FEDERAL LEGAL STATUS OTHER STATUS J. Jeffrey Mullahey, University of Florida, Bugwood.org AUTHORSHIP AND CITATION: Waggy, Melissa A. 2009. Solanum viarum. In: Fire Effects Information System, [Online]. U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station, Fire Sciences Laboratory (Producer). Available: http://www.fs.fed.us/database/feis/ [ 2010, January 21]. FEIS ABBREVIATION: SOLVIA NRCS PLANT CODE [96]: SOV12 COMMON NAMES: tropical soda apple sodom apple tropical soda-apple TAXONOMY: The scientific name of tropical soda apple is Solanum viarum Dunal (Solanaceae) [49,107]. SYNONYMS: Solanum khasianum Cl. var. chatterjeeanum Sen Gupta [5] LIFE FORM: Forb-shrub FEDERAL LEGAL STATUS: Noxious weed [94] OTHER STATUS: Information on state-level noxious weed status of plants in the United States is available at Plants Database. DISTRIBUTION AND OCCURRENCE SPECIES: Solanum viarum Many of the citations used throughout this section and the following sections resulted from collaborative research efforts at the University of Florida. Publications generated from the primary researchers at the University of Florida include original research [1,2,28,36,37,57,60,61,63,64,66,68,69,70,76,78,106,108] as well as reviews [26,27,65,71], conference proceedings [53,67], and extension literature [35,58,84,85]. Other reviews referenced within this text include the following publications, which summarize original research being conducted at the University of Florida but were not authored by any of the primary researchers: [23,24,25,34,52,74,102,103].