Common Weed Hosts of Insect-Transmitted Viruses of Florida Vegetable Crops1 Gaurav Goyal, Harsimran K
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Entry of the Membrane-Containing Bacteriophages Into Their Hosts
Entry of the membrane-containing bacteriophages into their hosts - Institute of Biotechnology and Department of Biosciences Division of General Microbiology Faculty of Biosciences and Viikki Graduate School in Molecular Biosciences University of Helsinki ACADEMIC DISSERTATION To be presented for public examination with the permission of the Faculty of Biosciences, University of Helsinki, in the auditorium 3 of Info center Korona, Viikinkaari 11, Helsinki, on June 18th, at 8 a.m. HELSINKI 2010 Supervisor Professor Dennis H. Bamford Department of Biosciences University of Helsinki, Finland Reviewers Professor Martin Romantschuk Department of Ecological and Environmental Sciences University of Helsinki, Finland Professor Mikael Skurnik Department of Bacteriology and Immunology University of Helsinki, Finland Opponent Dr. Alasdair C. Steven Laboratory of Structural Biology Research National Institute of Arthritis and Musculoskeletal and Skin Diseases National Institutes of Health, USA ISBN 978-952-10-6280-3 (paperback) ISBN 978-952-10-6281-0 (PDF) ISSN 1795-7079 Yliopistopaino, Helsinki University Printing House Helsinki 2010 ORIGINAL PUBLICATIONS This thesis is based on the following publications, which are referred to in the text by their roman numerals: I. 6 - Verkhovskaya R, Bamford DH. 2005. Penetration of enveloped double- stranded RNA bacteriophages phi13 and phi6 into Pseudomonas syringae cells. J Virol. 79(8):5017-26. II. Gaidelyt A*, Cvirkait-Krupovi V*, Daugelaviius R, Bamford JK, Bamford DH. 2006. The entry mechanism of membrane-containing phage Bam35 infecting Bacillus thuringiensis. J Bacteriol. 188(16):5925-34. III. Cvirkait-Krupovi V, Krupovi M, Daugelaviius R, Bamford DH. 2010. Calcium ion-dependent entry of the membrane-containing bacteriophage PM2 into Pseudoalteromonas host. -
Characterization and Electron Microscopy of a Potyvirus Infecting Commelina Diffusa F
Etiology Characterization and Electron Microscopy of a Potyvirus Infecting Commelina diffusa F. J. Morales and F. W. Zettler Graduate Student and Professor, respectively, Department of Plant Pathology, University of Florida, Gainesville, FL 32611. The authors are grateful to Louise M. Russell, Entomologist, U.S. Department of Agriculture, Agricultural Research Service, Beltsville, Maryland, and to David Hall, Department of Botany, University of Florida, for the identification of the Aphis and Commelina species, respectively, used in this study. We also appreciate the assistance of T. A. Zitter, Univ. of Florida Agric. Res. and Educ. Center, Belle Glade, for assistance in making surveys in Palm Beach County. Journal Series Paper No. 6187 of the Florida Agricultural Experiment Station. Accepted for publication 11 January 1977. ABSTRACT MORALES, F. J. and F. W. ZETTLER. 1977. Characterization and eletron microscopy of a potyvirus infecting Commelina diffusa. Phytopathology 67: 839-843. A filamentous virus has been discovered that induces with ammonium molybdate. The dilution end-point of mosaic symptoms in Commelina diffusa distinguishable CoMV was 10-' to 10- , its longevity in vitro was 12-20 hr, from those caused by cucumber mosaic virus (CMV). This and the thermal inactivation point was 50-60 C. Leaf extracts virus, herein designated as commelina mosaic virus (CoMV), from CoMV-infected plants did not react in which appears to be a potyvirus, was readily transmitted immunodiffusion tests with antisera prepared to bidens mechanically to C. diffusa but not to 15 other species in nine mottle, blackeye cowpea mosaic, dasheen mosaic, lettuce plant families. Commelina mosaic virus was transmitted in a mosaic, pepper mottle, potato Y, tobacco etch, or turnip stylet-borne manner by Myzus persicaeand Aphis gossypii. -
Aphid Transmission of Potyvirus: the Largest Plant-Infecting RNA Virus Genus
Supplementary Aphid Transmission of Potyvirus: The Largest Plant-Infecting RNA Virus Genus Kiran R. Gadhave 1,2,*,†, Saurabh Gautam 3,†, David A. Rasmussen 2 and Rajagopalbabu Srinivasan 3 1 Department of Plant Pathology and Microbiology, University of California, Riverside, CA 92521, USA 2 Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC 27606, USA; [email protected] 3 Department of Entomology, University of Georgia, 1109 Experiment Street, Griffin, GA 30223, USA; [email protected] * Correspondence: [email protected]. † Authors contributed equally. Received: 13 May 2020; Accepted: 15 July 2020; Published: date Abstract: Potyviruses are the largest group of plant infecting RNA viruses that cause significant losses in a wide range of crops across the globe. The majority of viruses in the genus Potyvirus are transmitted by aphids in a non-persistent, non-circulative manner and have been extensively studied vis-à-vis their structure, taxonomy, evolution, diagnosis, transmission and molecular interactions with hosts. This comprehensive review exclusively discusses potyviruses and their transmission by aphid vectors, specifically in the light of several virus, aphid and plant factors, and how their interplay influences potyviral binding in aphids, aphid behavior and fitness, host plant biochemistry, virus epidemics, and transmission bottlenecks. We present the heatmap of the global distribution of potyvirus species, variation in the potyviral coat protein gene, and top aphid vectors of potyviruses. Lastly, we examine how the fundamental understanding of these multi-partite interactions through multi-omics approaches is already contributing to, and can have future implications for, devising effective and sustainable management strategies against aphid- transmitted potyviruses to global agriculture. -
Identification of Zinnia Leaf Curl Virus Infecting Zinnia Elegans in India
ISABB Journal of Biotechnology and Bioinformatics Vol. 2(1), pp. 6-10, April 2012 Available online at http://www.isabb.academicjournals.org/JBB DOI: 10.5897/ISAAB-JBB12.001 ISSN 1937-3244©2012 Academic Journals Full Length Research Paper Identification of Zinnia leaf curl virus infecting Zinnia elegans in India NAVEEN PANDAY1 and A. K. TIWARI2* 1Department of Botany, DDU University Gorakhpur, Uttar Pradesh, UP, -273008 India. 2Central Laboratory, U P Council of Sugarcane Research, Shahjahnapur-242001, Uttar Pradesh, India. Accepted 26 March, 2012 In a survey during 2007 to 2009 at Gorakhpur and nearby locations of North Eastern Uttar Pradesh, India leaf curling, foliar deformation and distortion symptoms were observed on Zinnia elegans plants. The associated White fly population indicated the possible presence of begomovirus in the field. Therefore, Polymerase chain reaction (PCR) was performed with the begomovirus specific primers (TLCV-CP). Total genomic DNA was isolated from infected as well as healthy leaf samples. In gel electrophoresis expected ~500 bp amplicons was obtained in symptomatic leaf sample while, no amplicon was found in healthy leaf samples. Amplicon obtained were directly sequenced and submitted in the GenBank (GQ412352) and phylogeny were constructed with the available identical sequences in the Genbank. Based on the highest similarity 97% at nucleotide and 99% at amino acid level and closest relationship with isolates of Zinnia leaf curl virus, the present study isolate was considered an isolate of Zinnia leaf curl virus. Key words: Zinnia elegans, Zinnia leaf curl virus, polymerase chain reaction (PCR), phylogenetic analysis. INTRODUCTION Zinnia is a common Mexican wildflower and members of reported virus on Zinnia (Storey, 1931). -
Knowledge of Tobamovirus-Plant Interactions Helps in Understanding and Managing the New Invasive Tomato Brown Regose Fruit Virus (Tobrfv)
Knowledge of tobamovirus-plant interactions helps in understanding and managing the new invasive tomato brown regose fruit virus (ToBRFV) Robert L. Gilbertson Department of Plant Pathology University of California Davis Photos: N. Salem What is a tobamovirus? • It is a member of a genus (Tobamovirus) in the family Virgaviridae • The tobamovirus type species is Tobacco mosaic virus (TMV), a very famous plant virus! • 37 species currently recognized • Tobamoviruses have similar features -rigid rod-shaped virus particles (18 X 300 nm) -single positive-sense RNA genome of ~6.4 kb -similar genome -transmitted by contact and seed, no insect vector • Many cause economically important diseases! Multiple tobamoviruses infect tomato • At least five tobamoviruses infect tomato and induce similar symptoms: -Tobacco mosaic virus (TMV) -Tomato mosaic virus (ToMV) -Tobacco mild green mosaic virus (TMGMV) -Tomato mottle mosaic virus (ToMMV) -Tomato brown rugose fruit virus (ToBRFV) Symptoms Symptoms Virus Emergent Leaves Fruit Tm-22 Distribution Importance TMV No Mo, Di, SS Browning* Resistant WW Low ToMV No Mo. Di, SS Browning* Resistant WW High TGMMV No Mo, Di, SS Few or none Resistant WW Medium ToMMV Yes (2013) Mo, Di, SS Few or none Resistant* MX, USA, Medium ME, Spain ToBRFV Yes (2015) Mo, Di, SS Necrotic Susceptible ME, MX, High lesions* USA, Europe Type of tomato production and potential ToBRFV impact • Open field *Processing tomatoes in CA Minimal touching and 3 month tomato free period No findings in 2020 **Fresh market production (various) -
No Evidence Known Viruses Play a Role in the Pathogenesis of Onchocerciasis-Associated Epilepsy
pathogens Article No Evidence Known Viruses Play a Role in the Pathogenesis of Onchocerciasis-Associated Epilepsy. An Explorative Metagenomic Case-Control Study Michael Roach 1 , Adrian Cantu 2, Melissa Krizia Vieri 3 , Matthew Cotten 4,5,6, Paul Kellam 5, My Phan 5,6 , Lia van der Hoek 7 , Michel Mandro 8, Floribert Tepage 9, Germain Mambandu 10, Gisele Musinya 11, Anne Laudisoit 12 , Robert Colebunders 3 , Robert Edwards 1,2,13 and John L. Mokili 13,* 1 College of Science and Engineering, Flinders University, Adelaide, SA 5001, Australia; michael.roach@flinders.edu.au (M.R.); robert.edwards@flinders.edu.au (R.E.) 2 Computational Sciences Research Center, Biology Department, San Diego State University, San Diego, CA 92182, USA; [email protected] 3 Global Health Institute, University of Antwerp, 2160 Antwerp, Belgium; [email protected] (M.K.V.); [email protected] (R.C.) 4 Wellcome Trust Sanger Institute, Hinxton CB10 1RQ, UK; [email protected] 5 MRC/UVRI and London School of Hygiene and Tropical Medicine, Entebbe, Uganda; [email protected] (P.K.); [email protected] (M.P.) 6 Centre for Virus Research, MRC-University of Glasgow, Glasgow G61 1QH, UK 7 Laboratory of Experimental Virology, Department of Medical Microbiology and Infection Prevention, Amsterdam UMC, University of Amsterdam, 1012 WX Amsterdam, The Netherlands; [email protected] 8 Provincial Health Division Ituri, Ministry of Health, Ituri, Congo; [email protected] Citation: Roach, M.; Cantu, A.; Vieri, 9 Provincial Health Division Bas Uélé, Ministry of Health, Bas Uélé, Congo; fl[email protected] M.K.; Cotten, M.; Kellam, P.; Phan, M.; 10 Provincial Health Division Tshopo, Ministry of Health, Tshopo, Congo; [email protected] Hoek, L.v.d.; Mandro, M.; Tepage, F.; 11 Médecins Sans Frontières, Bunia, Congo; [email protected] Mambandu, G.; et al. -
Ancient Recombination Events and the Origins of Hepatitis E Virus Andrew G
Kelly et al. BMC Evolutionary Biology (2016) 16:210 DOI 10.1186/s12862-016-0785-y RESEARCH ARTICLE Open Access Ancient recombination events and the origins of hepatitis E virus Andrew G. Kelly, Natalie E. Netzler and Peter A. White* Abstract Background: Hepatitis E virus (HEV) is an enteric, single-stranded, positive sense RNA virus and a significant etiological agent of hepatitis, causing sporadic infections and outbreaks globally. Tracing the evolutionary ancestry of HEV has proved difficult since its identification in 1992, it has been reclassified several times, and confusion remains surrounding its origins and ancestry. Results: To reveal close protein relatives of the Hepeviridae family, similarity searching of the GenBank database was carried out using a complete Orthohepevirus A, HEV genotype I (GI) ORF1 protein sequence and individual proteins. The closest non-Hepeviridae homologues to the HEV ORF1 encoded polyprotein were found to be those from the lepidopteran-infecting Alphatetraviridae family members. A consistent relationship to this was found using a phylogenetic approach; the Hepeviridae RdRp clustered with those of the Alphatetraviridae and Benyviridae families. This puts the Hepeviridae ORF1 region within the “Alpha-like” super-group of viruses. In marked contrast, the HEV GI capsid was found to be most closely related to the chicken astrovirus capsid, with phylogenetic trees clustering the Hepeviridae capsid together with those from the Astroviridae family, and surprisingly within the “Picorna-like” supergroup. These results indicate an ancient recombination event has occurred at the junction of the non-structural and structure encoding regions, which led to the emergence of the entire Hepeviridae family. -
Insect Transmitted Viruses of Grains CP
INDUSTRY BIOSECURITY PLAN FOR THE GRAINS INDUSTRY Generic Contingency Plan Sap-sucking insect transmitted viruses affecting the grains industry Specific examples detailed in this plan: Peanut Stripe Virus (Potyvirus), Chickpea Chlorotic Dwarf Virus (Geminivirus) and Chickpea Chlorotic Stunt Virus (Polerovirus) Plant Health Australia May 2014 Disclaimer The scientific and technical content of this document is current to the date published and all efforts have been made to obtain relevant and published information on the pest. New information will be included as it becomes available, or when the document is reviewed. The material contained in this publication is produced for general information only. It is not intended as professional advice on any particular matter. No person should act or fail to act on the basis of any material contained in this publication without first obtaining specific, independent professional advice. Plant Health Australia and all persons acting for Plant Health Australia in preparing this publication, expressly disclaim all and any liability to any persons in respect of anything done by any such person in reliance, whether in whole or in part, on this publication. The views expressed in this publication are not necessarily those of Plant Health Australia. Further information For further information regarding this contingency plan, contact Plant Health Australia through the details below. Address: Level 1, 1 Phipps Close DEAKIN ACT 2600 Phone: 61 2 6215 7700 Fax: 61 2 6260 4321 Email: [email protected] ebsite: www.planthealthaustralia.com.au An electronic copy of this plan is available from the web site listed above. © Plant Health Australia Limited 2014 Copyright in this publication is owned by Plant Health Australia Limited, except when content has been provided by other contributors, in which case copyright may be owned by another person. -
The Hcpro from the Potyviridae Family: an Enviable Multitasking Helper Component That Every Virus Would Like to Have
bs_bs_banner MOLECULAR PLANT PATHOLOGY (2018) 19(3), 744–763 DOI: 10.1111/mpp.12553 Review The HCPro from the Potyviridae family: an enviable multitasking Helper Component that every virus would like to have ADRIAN A. VALLI1,*, ARAIZ GALLO1 , BERNARDO RODAMILANS1 ,JUANJOSELOPEZ-MOYA 2 AND JUAN ANTONIO GARCIA 1,* 1Centro Nacional de Biotecnologıa (CNB-CSIC), Madrid 28049, Spain 2Center for Research in Agricultural Genomics (CRAG-CSIC-IRTA-UAB-UB), Campus UAB, Bellaterra, Barcelona 08193, Spain structure, RNA sequence and transmission vectors (Revers and SUMMARY Garcıa, 2015). Most potyvirids (i.e. viruses belonging to the RNA viruses have very compact genomes and so provide a Potyviridae family) have monopartite, single-stranded and unique opportunity to study how evolution works to optimize the positive-sense genomes of around 10 000 nucleotides that are use of very limited genomic information. A widespread viral encapsidated by multiple units of a single coat protein (CP) in flex- strategy to solve this issue concerning the coding space relies on uous and filamentous virus particles of 680–900 nm in length and the expression of proteins with multiple functions. Members of 11–14 nm in diameter (Kendall et al., 2008). Exceptionally, bymo- the family Potyviridae, the most abundant group of RNA viruses viruses are peculiar in this regard, as they have a bipartite genome in plants, offer several attractive examples of viral factors which that is encapsidated separately. Inside the infected cells, the viral play roles in diverse infection-related -
Since January 2020 Elsevier Has Created a COVID-19 Resource Centre with Free Information in English and Mandarin on the Novel Coronavirus COVID- 19
Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID- 19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active. CHAPTER ONE Supramolecular Architecture of the Coronavirus Particle B.W. Neuman*,†,1, M.J. Buchmeier{ *School of Biological Sciences, University of Reading, Reading, United Kingdom †College of STEM, Texas A&M University, Texarkana, Texarkana, TX, United States { University of California, Irvine, Irvine, CA, United States 1Corresponding author: e-mail address: [email protected] Contents 1. Introduction 1 2. Virion Structure and Durability 4 3. Viral Proteins in Assembly and Fusion 5 3.1 Membrane Protein 5 3.2 Nucleoprotein 8 3.3 Envelope Protein 9 3.4 Spike Protein 11 4. Evolution of the Structural Proteins 13 References 16 Abstract Coronavirus particles serve three fundamentally important functions in infection. The virion provides the means to deliver the viral genome across the plasma membrane of a host cell. The virion is also a means of escape for newly synthesized genomes. -
Molecular Analysis of Vanilla Mosaic Virus from the Cook Islands
Molecular Analysis of Vanilla mosaic virus from the Cook Islands Christopher Puli’uvea A thesis submitted to Auckland University of Technology in partial fulfilment of the requirements for the degree of Master of Science (MSc) 2017 School of Science I Abstract Vanilla was first introduced to French Polynesia in 1848 and from 1899-1966 was a major export for French Polynesia who then produced an average of 158 tonnes of cured Vanilla tahitensis beans annually. In 1967, vanilla production declined rapidly to a low of 0.6 tonnes by 1981, which prompted a nation-wide investigation with the aim of restoring vanilla production to its former levels. As a result, a mosaic-inducing virus was discovered infecting V. tahitensis that was distinct from Cymbidium mosaic virus (CyMV) and Odontoglossum ringspot virus (ORSV) but serologically related to dasheen mosaic virus (DsMV). The potyvirus was subsequently named vanilla mosaic virus (VanMV) and was later reported to infect V. tahitensis in the Cook Islands and V. planifolia in Fiji and Vanuatu. Attempts were made to mechanically inoculate VanMV to a number of plants that are susceptible to DsMV, but with no success. Based on a partial sequence analysis, VanMV-FP (French Polynesian isolate) and VanMV-CI (Cook Islands isolate) were later characterised as strains of DsMV exclusively infecting vanilla. Since its discovery, little information is known about how VanMV-CI acquired the ability to exclusively infect vanilla and lose its ability to infect natural hosts of DsMV or vice versa. The aims of this research were to characterise the VanMV genome and attempt to determine the molecular basis for host range specificity of VanMV-CI. -
RNA Viral Metagenome of Whiteflies Leads to the Discovery and Characterization of a Whitefly- Transmitted Carlavirus in North America
University of South Florida Scholar Commons Marine Science Faculty Publications College of Marine Science 1-21-2014 RNA Viral Metagenome of Whiteflies Leads ot the Discovery and Characterization of a Whitefly-Transmitted Carlavirus in North America Karyna Rosario University of South Florida, [email protected] Heather Capobianco University of Florida Terry Fei Fan Ng University of South Florida Mya Breitbart University of South Florida, [email protected] Jane E. Polston University of Florida Follow this and additional works at: https://scholarcommons.usf.edu/msc_facpub Part of the Marine Biology Commons Scholar Commons Citation Rosario, Karyna; Capobianco, Heather; Ng, Terry Fei Fan; Breitbart, Mya; and Polston, Jane E., "RNA Viral Metagenome of Whiteflies Leads ot the Discovery and Characterization of a Whitefly-Transmitted Carlavirus in North America" (2014). Marine Science Faculty Publications. 229. https://scholarcommons.usf.edu/msc_facpub/229 This Article is brought to you for free and open access by the College of Marine Science at Scholar Commons. It has been accepted for inclusion in Marine Science Faculty Publications by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. RNA Viral Metagenome of Whiteflies Leads to the Discovery and Characterization of a Whitefly- Transmitted Carlavirus in North America Karyna Rosario1*, Heather Capobianco2, Terry Fei Fan Ng1¤, Mya Breitbart1, Jane E. Polston2 1 College of Marine Science, University of South Florida, Saint Petersburg, Florida, United States of America, 2 Department of Plant Pathology, University of Florida, Gainesville, Florida, United States of America Abstract Whiteflies from the Bemisia tabaci species complex have the ability to transmit a large number of plant viruses and are some of the most detrimental pests in agriculture.