Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 22 June 2021 doi:10.20944/preprints202106.0535.v1 Article DNA barcodes, a powerful tool for rapid construction of a base- line and conservation of aquatic ecosystems in Sian Ka’an re- serve (Quintana Roo state, Mexico) and adjacent areas Martha Valdez Moreno1, Manuel Mendoza Carranza2, Eduardo Rendón-Hernández3, Erika Alarcón-Chavira3 and Manuel Elías-Gutiérrez1* 1 El Colegio de la Frontera Sur, Departamento de Sistemática y Ecología Acuática, Av. Centenario Km.5.5, Chetumal, 77014 Quintana Roo, México;
[email protected] 2 El Colegio de la Frontera Sur, Departamento de Ciencias de la Sustentabilidad, Carretera a Reforma Km 15.5, Villahermosa, 86280, Tabasco, México;
[email protected] 3 Comisión Nacional de Áreas Naturales Protegidas, Av. Ejército Nacional 223. Miguel Hidalgo, 11320, Ciu- dad de México, México;
[email protected];
[email protected] * Correspondence:
[email protected] Abstract: This study is focused on the aquatic environments of the Sian Ka’an reserve, a World Heritage Site. We applied protocols recently developed for the rapid assessment of most animal taxa inhabiting any freshwater system using light traps and DNA barcodes, represented by the mito- chondrial gene Cytochrome Oxidase I (COI). We DNA barcoded 1,037 specimens comprising mites, crustaceans, insects, and fish larvae from 13 aquatic environments close or inside the reserve, with a success rate of 99.8%. In total, 167 Barcode Index Numbers (BINs) were detected. From them, we identified 43 species. All others remain as a BIN. Besides, we applied the non-invasive method of environmental DNA (eDNA) to analyze the adult fish communities and identified the sequences obtained with the Barcode of Life Database (BOLD).