ICP 72 – Mirande & Koerber (2020) CLOFFAR-2
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Comprehensive Phylogeny of Ray-Finned Fishes (Actinopterygii) Based on Transcriptomic and Genomic Data
Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data Lily C. Hughesa,b,1,2, Guillermo Ortía,b,1,2, Yu Huangc,d,1, Ying Sunc,e,1, Carole C. Baldwinb, Andrew W. Thompsona,b, Dahiana Arcilaa,b, Ricardo Betancur-R.b,f, Chenhong Lig, Leandro Beckerh, Nicolás Bellorah, Xiaomeng Zhaoc,d, Xiaofeng Lic,d, Min Wangc, Chao Fangd, Bing Xiec, Zhuocheng Zhoui, Hai Huangj, Songlin Chenk, Byrappa Venkateshl,2, and Qiong Shic,d,2 aDepartment of Biological Sciences, The George Washington University, Washington, DC 20052; bNational Museum of Natural History, Smithsonian Institution, Washington, DC 20560; cShenzhen Key Lab of Marine Genomics, Guangdong Provincial Key Lab of Molecular Breeding in Marine Economic Animals, Beijing Genomics Institute Academy of Marine Sciences, Beijing Genomics Institute Marine, Beijing Genomics Institute, 518083 Shenzhen, China; dBeijing Genomics Institute Education Center, University of Chinese Academy of Sciences, 518083 Shenzhen, China; eChina National GeneBank, Beijing Genomics Institute-Shenzhen, 518120 Shenzhen, China; fDepartment of Biology, University of Puerto Rico–Rio Piedras, San Juan 00931, Puerto Rico; gKey Laboratory of Exploration and Utilization of Aquatic Genetic Resources, Shanghai Ocean University, Ministry of Education, 201306 Shanghai, China; hLaboratorio de Ictiología y Acuicultura Experimental, Universidad Nacional del Comahue–CONICET, 8400 Bariloche, Argentina; iProfessional Committee of Native Aquatic Organisms and Water Ecosystem, China Fisheries Association, 100125 Beijing, China; jCollege of Life Science and Ecology, Hainan Tropical Ocean University, 572022 Sanya, China; kYellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, 266071 Qingdao, China; and lComparative Genomics Laboratory, Institute of Molecular and Cell Biology, A*STAR, Biopolis, 138673 Singapore Edited by Scott V. -
A Global Assessment of Parasite Diversity in Galaxiid Fishes
diversity Article A Global Assessment of Parasite Diversity in Galaxiid Fishes Rachel A. Paterson 1,*, Gustavo P. Viozzi 2, Carlos A. Rauque 2, Verónica R. Flores 2 and Robert Poulin 3 1 The Norwegian Institute for Nature Research, P.O. Box 5685, Torgarden, 7485 Trondheim, Norway 2 Laboratorio de Parasitología, INIBIOMA, CONICET—Universidad Nacional del Comahue, Quintral 1250, San Carlos de Bariloche 8400, Argentina; [email protected] (G.P.V.); [email protected] (C.A.R.); veronicaroxanafl[email protected] (V.R.F.) 3 Department of Zoology, University of Otago, P.O. Box 56, Dunedin 9054, New Zealand; [email protected] * Correspondence: [email protected]; Tel.: +47-481-37-867 Abstract: Free-living species often receive greater conservation attention than the parasites they support, with parasite conservation often being hindered by a lack of parasite biodiversity knowl- edge. This study aimed to determine the current state of knowledge regarding parasites of the Southern Hemisphere freshwater fish family Galaxiidae, in order to identify knowledge gaps to focus future research attention. Specifically, we assessed how galaxiid–parasite knowledge differs among geographic regions in relation to research effort (i.e., number of studies or fish individuals examined, extent of tissue examination, taxonomic resolution), in addition to ecological traits known to influ- ence parasite richness. To date, ~50% of galaxiid species have been examined for parasites, though the majority of studies have focused on single parasite taxa rather than assessing the full diversity of macro- and microparasites. The highest number of parasites were observed from Argentinean galaxiids, and studies in all geographic regions were biased towards the highly abundant and most widely distributed galaxiid species, Galaxias maculatus. -
Global Patterns of Ranavirus Detections
NOTE Global patterns of ranavirus detections Jesse L. Brunnera*, Deanna H. Olsonb, Matthew J. Grayc, Debra L. Millerd, and Amanda L.J. Duffuse aSchool of Biological Sciences, Washington State University, Pullman, WA 99164-4236, USA; bUSDA Forest Service, Pacific Northwest Research Station, Corvallis, OR 97331-8550, USA; cDepartment of Forestry, Wildlife and Fisheries, University of Tennessee Institute of Agriculture, Knoxville, TN 37996-4563, USA; dCollege of Veterinary Medicine, University of Tennessee Institute of Agriculture, Knoxville, TN 37996-4563, USA; eDepartment of Natural Sciences, Gordon State College, Barnesville, GA 30204, USA *[email protected] Abstract Ranaviruses are emerging pathogens of poikilothermic vertebrates. In 2015 the Global Ranavirus Reporting System (GRRS) was established as a centralized, open access, online database for reports of the presence (and absence) of ranavirus around the globe. The GRRS has multiple data layers (e.g., location, date, host(s) species, and methods of detection) of use to those studying the epidemiol- ogy, ecology, and evolution of this group of viruses. Here we summarize the temporal, spatial, diag- nostic, and host-taxonomic patterns of ranavirus reports in the GRRS. The number, distribution, and host diversity of ranavirus reports have increased dramatically since the mid 1990s, presumably in response to increased interest in ranaviruses and the conservation of their hosts, and also the availability of molecular diagnostics. Yet there are clear geographic and taxonomic biases among the OPEN ACCESS reports. We encourage ranavirus researchers to add their studies to the portal because such collation can provide collaborative opportunities and unique insights to our developing knowledge of this For personal use only. -
FAMILY Loricariidae Rafinesque, 1815
FAMILY Loricariidae Rafinesque, 1815 - suckermouth armored catfishes SUBFAMILY Lithogeninae Gosline, 1947 - suckermoth armored catfishes GENUS Lithogenes Eigenmann, 1909 - suckermouth armored catfishes Species Lithogenes valencia Provenzano et al., 2003 - Valencia suckermouth armored catfish Species Lithogenes villosus Eigenmann, 1909 - Potaro suckermouth armored catfish Species Lithogenes wahari Schaefer & Provenzano, 2008 - Cuao suckermouth armored catfish SUBFAMILY Delturinae Armbruster et al., 2006 - armored catfishes GENUS Delturus Eigenmann & Eigenmann, 1889 - armored catfishes [=Carinotus] Species Delturus angulicauda (Steindachner, 1877) - Mucuri armored catfish Species Delturus brevis Reis & Pereira, in Reis et al., 2006 - Aracuai armored catfish Species Delturus carinotus (La Monte, 1933) - Doce armored catfish Species Delturus parahybae Eigenmann & Eigenmann, 1889 - Parahyba armored catfish GENUS Hemipsilichthys Eigenmann & Eigenmann, 1889 - wide-mouthed catfishes [=Upsilodus, Xenomystus] Species Hemipsilichthys gobio (Lütken, 1874) - Parahyba wide-mouthed catfish [=victori] Species Hemipsilichthys nimius Pereira, 2003 - Pereque-Acu wide-mouthed catfish Species Hemipsilichthys papillatus Pereira et al., 2000 - Paraiba wide-mouthed catfish SUBFAMILY Rhinelepinae Armbruster, 2004 - suckermouth catfishes GENUS Pogonopoma Regan, 1904 - suckermouth armored catfishes, sucker catfishes [=Pogonopomoides] Species Pogonopoma obscurum Quevedo & Reis, 2002 - Canoas sucker catfish Species Pogonopoma parahybae (Steindachner, 1877) - Parahyba -
Investigating the Feasibility to Remove Shp Pandeiros: Lessons from Fish Fauna
RAFAEL COUTO ROSA DE SOUZA INVESTIGATING THE FEASIBILITY TO REMOVE SHP PANDEIROS: LESSONS FROM FISH FAUNA LAVRAS-MG 2017 RAFAEL COUTO ROSA DE SOUZA INVESTIGATING THE FEASIBILITY TO REMOVE THE SHP PANDEIROS: LESSONS FROM FISH Tese apresentada à Universidade Federal de Lavras, como parte das exigências do Programa de Pós-Graduação em Ecologia Aplicada, para a obtenção do título de Doutor. Prof. Dr. Paulo dos Santos Pompeu Orientador LAVRAS-MG 2017 Ficha catalográfica elaborada pelo Sistema de Geração de Ficha Catalográfica da Biblioteca Universitária da UFLA, com dados informados pelo(a) próprio(a) autor(a). Souza, Rafael Couto Rosa. Investigating the feasibility to remove SHP Pandeiros: Lessons from fish fauna / Rafael Couto Rosa Souza. - 2017. 79 p. Orientador(a): Paulo Santos Pompeu. Tese (doutorado) - Universidade Federal de Lavras, 2017. Bibliografia. 1. Dam removal. 2. Fish ecology. 3. Trophic ecology. I. Pompeu, Paulo Santos. II. Título. O conteúdo desta obra é de responsabilidade do(a) autor(a) e de seu orientador(a). RAFAEL COUTO ROSA DE SOUZA INVESTIGATING THE FEASIBILITY TO REMOVE THE SHP PANDEIROS: LESSONS FROM FISH FAUNA Tese apresentada à Universidade Federal de Lavras, como parte das exigências do Programa de Pós-Graduação em Ecologia Aplicada, para a obtenção do título de Doutor. APROVADA em 04 agosto de 2017. Profa. Carla Rodrigues Ribas UFLA Prof. Marcos Callisto de Faria Pereira UFMG Prof. Rafael Pereira Leitão UFMG Prof. Luis Antônio Coimbra Borges UFLA Prof. Dr. Paulo dos Santos Pompeu Orientador LAVRAS-MG 2017 Dedico este trabalho aos peixes que sacrifiquei no intuito de conservar o ambiente no qual eles viviam, apesar de contraditório suas mortes não passaram desapercebidas. -
Appendix 1: Maps and Plans Appendix184 Map 1: Conservation Categories for the Nominated Property
Appendix 1: Maps and Plans Appendix184 Map 1: Conservation Categories for the Nominated Property. Los Alerces National Park, Argentina 185 Map 2: Andean-North Patagonian Biosphere Reserve: Context for the Nominated Proprty. Los Alerces National Park, Argentina 186 Map 3: Vegetation of the Valdivian Ecoregion 187 Map 4: Vegetation Communities in Los Alerces National Park 188 Map 5: Strict Nature and Wildlife Reserve 189 Map 6: Usage Zoning, Los Alerces National Park 190 Map 7: Human Settlements and Infrastructure 191 Appendix 2: Species Lists Ap9n192 Appendix 2.1 List of Plant Species Recorded at PNLA 193 Appendix 2.2: List of Animal Species: Mammals 212 Appendix 2.3: List of Animal Species: Birds 214 Appendix 2.4: List of Animal Species: Reptiles 219 Appendix 2.5: List of Animal Species: Amphibians 220 Appendix 2.6: List of Animal Species: Fish 221 Appendix 2.7: List of Animal Species and Threat Status 222 Appendix 3: Law No. 19,292 Append228 Appendix 4: PNLA Management Plan Approval and Contents Appendi242 Appendix 5: Participative Process for Writing the Nomination Form Appendi252 Synthesis 252 Management Plan UpdateWorkshop 253 Annex A: Interview Guide 256 Annex B: Meetings and Interviews Held 257 Annex C: Self-Administered Survey 261 Annex D: ExternalWorkshop Participants 262 Annex E: Promotional Leaflet 264 Annex F: Interview Results Summary 267 Annex G: Survey Results Summary 272 Annex H: Esquel Declaration of Interest 274 Annex I: Trevelin Declaration of Interest 276 Annex J: Chubut Tourism Secretariat Declaration of Interest 278 -
Composición, Origen Y Valor De Conservación De La Ictiofauna Del Río San Pedro (Cuenca Del Río Valdivia, Chile)
Gayana Especial:75(2), 2012 10-23, 2012. Composición, origen y valor de conservación de la Ictiofauna del Río San Pedro (Cuenca del Río Valdivia, Chile) Composition, origin and conservation value of the San Pedro River Ichthyofauna (Valdivia River Basin, Chile) EVELYN HABIT1, PEDRO VICTORIANO2 1Unidad de Sistemas Acuáticos, Centro de Ciencias Ambientales EULA-Chile, Universidad de Concepción. Concepción, Chile. Casilla 160-C. 2Facultad de Ciencias Naturales y Oceanográfi cas. Departamento de Zoología, Universidad de Concepción. Concepción, Chile. Casilla160-C. E-mail: [email protected] RESUMEN Basado en muestreos de tres años consecutivos y revisión de literatura, describimos la composición, singularidad y estado de conservación de la ictiofauna del río San Pedro, en la cuenca del río Valdivia. Además, analizamos los posibles orígenes de esta ictiofauna, postulando que parte de la cuenca del río Valdivia ha funcionado como un sumidero, principalmente su parte alta, con aportes de fuentes tanto costero-Pacífi cas como del Este de Los Andes. Concluimos que el río San Pedro es de particular valor ictiofaunístico por su alta riqueza específi ca, endemismos y características biogeográfi cas. PALABRAS CLAVE: Fauna íctica, Río San Pedro, Endemismos, Conservación, Chile. ABSTRACT Based on three consecutive years of sampling and bibliographic revision, the composition, singularity and conservation status of the San Pedro River ichthyofauna is described. In addition, the potential origin of this Valdivia River ichthyofauna was analyzed and this basin is proposed to have worked like a sink, mainly the higher zone, having been colonized both from Coastal-Pacifi c as from Eastern Andes sources. It is concluded that this river has a particular conservation value due to its high species richness, endemism and biogeographic characteristics. -
Siluriformes, Heptapteridae) from Chapada Dos Parecis, Western Brazil, with an Assessment of the Morphological Characters Bearing on Their Phylogenetic Relationships
ARTICLE Two new, remarkably colored species of the Neotropical catfish genus Cetopsorhamdia Eigenmann & Fisher, 1916 (Siluriformes, Heptapteridae) from Chapada dos Parecis, western Brazil, with an assessment of the morphological characters bearing on their phylogenetic relationships Flávio A. Bockmann¹ & Roberto E. Reis² ¹ Universidade de São Paulo (USP), Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto (FFCLRP), Departamento de Biologia (DB), Laboratório de Ictiologia de Ribeirão Preto, Programa de Pós-Graduação em Biologia Comparada. Ribeirão Preto, SP, Brasil. ORCID: http://orcid.org/0000-0002-1200-1487. E-mail: [email protected] ² Pontifícia Universidade Católica do Rio Grande do Sul (PUCRS), Laboratório de Sistemática de Vertebrados. Porto Alegre, RS, Brasil. ORCID: http://orcid.org/0000-0003-3746-6894. E-mail: [email protected] Abstract. Two new species of heptapterid catfish genus Cetopsorhamdia are described from close localities in western Brazil, at Chapada dos Parecis, an area with extremely high level of endemism. One species is from the upper Rio Madeira system, Rondônia State, and the other from the upper Rio Tapajós system, Mato Grosso State. The two species are diagnosed, among several other features, by their markedly distinctive color patterns, with the former having well-defined quadrangular marks in trunk flanks while the latter bearing irregular, vertical bars along the trunk. The monophyly of Cetopsorhamdia is discussed, with two putative synapomorphies being proposed to support the genus. Potentially informative morphological characters to resolve the internal relationships of the genus are presented and discussed. Despite the striking external differences between the two species herein described, they are found to likely form a clade. -
Documento Completo Descargar Archivo
Publicaciones científicas del Dr. Raúl A. Ringuelet Zoogeografía y ecología de los peces de aguas continentales de la Argentina y consideraciones sobre las áreas ictiológicas de América del Sur Ecosur, 2(3): 1-122, 1975 Contribución Científica N° 52 al Instituto de Limnología Versión electrónica por: Catalina Julia Saravia (CIC) Instituto de Limnología “Dr. Raúl A. Ringuelet” Enero de 2004 1 Zoogeografía y ecología de los peces de aguas continentales de la Argentina y consideraciones sobre las áreas ictiológicas de América del Sur RAÚL A. RINGUELET SUMMARY: The zoogeography and ecology of fresh water fishes from Argentina and comments on ichthyogeography of South America. This study comprises a critical review of relevant literature on the fish fauna, genocentres, means of dispersal, barriers, ecological groups, coactions, and ecological causality of distribution, including an analysis of allotopic species in the lame lake or pond, the application of indexes of diversity of severa¡ biotopes and comments on historical factors. Its wide scope allows to clarify several aspects of South American Ichthyogeography. The location of Argentina ichthyological fauna according to the above mentioned distributional scheme as well as its relation with the most important hydrography systems are also provided, followed by additional information on its distribution in the Argentine Republic, including an analysis through the application of Simpson's similitude test in several localities. SINOPSIS I. Introducción II. Las hipótesis paleogeográficas de Hermann von Ihering III. La ictiogeografía de Carl H. Eigenmann IV. Estudios de Emiliano J. Mac Donagh sobre distribución de peces argentinos de agua dulce V. El esquema de Pozzi según el patrón hidrográfico actual VI. -
Landscape and Habitat Characteristics Associated with Fish Occurrence and Richness in Southern Brazil Palustrine Wetland Systems
Environ Biol Fish DOI 10.1007/s10641-013-0152-4 Landscape and habitat characteristics associated with fish occurrence and richness in southern Brazil palustrine wetland systems Leonardo Maltchik & Luis Esteban Krause Lanés & Friedrich Wolfgang Keppeler & Ana Silvia Rolon & Cristina Stenert Received: 18 July 2012 /Accepted: 12 June 2013 # Springer Science+Business Media Dordrecht 2013 Abstract We investigated the influence of environ- The predictors of fish richness were not similarly appli- mental factors in fish communities of 146 palustrine cable to different ecoregions. Our results showed that wetlands, covering a wide range of altitude and wetland the habitat diversity, macroinvertebrate richness, altitude surface area in Neotropical region. Two questions were and hydroperiod were the environmental predictors that analyzed: (1) Are wetland altitude, area, habitat diversi- potentially structure and maintain the fish occurrence ty, hydroperiod (permanent and intermittent), ecoregion, and richness in southern Brazil palustrine wetlands. and macroinvertebrate richness good predictors of oc- Such information is essential to develop wetland con- currence, richness, abundance and composition of fish servation and management programs in this region, species? and (2) Are the predictors of fish richness where more than 90 % of wetland systems have already similarly applicable to different ecoregions in Southern been lost and the remaining ones are still at high risk due Brazil? Our data showed that fish richness was to the anthropogenic activities. related to habitat diversity and macroinvertebrate richness, and fish occurrence was influenced by Keywords South American fishes . Ecoregions . wetland area and macroinvertebrate richness. Fish Ichthyofauna . Biodiversity conservation abundance was influenced by altitude, hydroperiod and macroinvertebrate richness, and the fish composition was jointly associated with ecoregion, and hydroperiod. -
(Monogenea: Dactylogyridae) and a Redescription of D
Journal of Helminthology (2018) 92, 228–243 doi:10.1017/S0022149X17000256 © Cambridge University Press 2017 Morphology and molecular characterization of Demidospermus spirophallus n. sp., D. prolixus n. sp. (Monogenea: Dactylogyridae) and a redescription of D. anus in siluriform catfish from Brazil L. Franceschini1*, A.C. Zago1, M.I. Müller1, C.J. Francisco1, R.M. Takemoto2 and R.J. da Silva1 1São Paulo State University (Unesp), Institute of Biosciences, Botucatu, Brazil, CEP 18618-689: 2State University of Maringá (UEM), Limnology, Ichthyology and Aquaculture Research Center (Nupélia), Maringá, Brazil, CEP 87020-900 (Received 29 September 2016; Accepted 26 February 2017; First published online 6 April 2017) Abstract The present study describes Demidospermus spirophallus n. sp. and Demidosper- mus prolixus n. sp. (Monogenea, Dactylogyridae) from the siluriform catfish Loricaria prolixa Isbrücker & Nijssen, 1978 (Siluriformes, Loricariidae) from the state of São Paulo, Brazil, supported by morphological and molecular data. In add- ition, notes on the circumscription of the genus with a redescription of Demisdospermus anus are presented. Demidospermus spirophallus n. sp. differed from other congeners mainly because of the morphology of the male copulatory organ (MCO), which exhibited 2½ counterclockwise rings, a tubular accessory piece with one bifurcated end and a weakly sclerotized vagina with sinistral open- ing. Demidospermus prolixus n. sp. presents a counterclockwise-coiled MCO with 1½ rings, an ovate base, a non-articulated groove-like accessory piece serving as an MCO guide, two different hook shapes, inconspicuous tegumental annulations, a non-sclerotized vagina with sinistral opening and the absence of eyes or acces- sory eyespots. The present study provides, for the first time, molecular character- ization data using the partial ribosomal gene (28S) of two new species of Demidospermus from Brazil (D. -
Multi-Locus Fossil-Calibrated Phylogeny of Atheriniformes (Teleostei, Ovalentaria)
Molecular Phylogenetics and Evolution 86 (2015) 8–23 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Multi-locus fossil-calibrated phylogeny of Atheriniformes (Teleostei, Ovalentaria) Daniela Campanella a, Lily C. Hughes a, Peter J. Unmack b, Devin D. Bloom c, Kyle R. Piller d, ⇑ Guillermo Ortí a, a Department of Biological Sciences, The George Washington University, Washington, DC, USA b Institute for Applied Ecology, University of Canberra, Australia c Department of Biology, Willamette University, Salem, OR, USA d Department of Biological Sciences, Southeastern Louisiana University, Hammond, LA, USA article info abstract Article history: Phylogenetic relationships among families within the order Atheriniformes have been difficult to resolve Received 29 December 2014 on the basis of morphological evidence. Molecular studies so far have been fragmentary and based on a Revised 21 February 2015 small number taxa and loci. In this study, we provide a new phylogenetic hypothesis based on sequence Accepted 2 March 2015 data collected for eight molecular markers for a representative sample of 103 atheriniform species, cover- Available online 10 March 2015 ing 2/3 of the genera in this order. The phylogeny is calibrated with six carefully chosen fossil taxa to pro- vide an explicit timeframe for the diversification of this group. Our results support the subdivision of Keywords: Atheriniformes into two suborders (Atherinopsoidei and Atherinoidei), the nesting of Notocheirinae Silverside fishes within Atherinopsidae, and the monophyly of tribe Menidiini, among others. We propose taxonomic Marine to freshwater transitions Marine dispersal changes for Atherinopsoidei, but a few weakly supported nodes in our phylogeny suggests that further Molecular markers study is necessary to support a revised taxonomy of Atherinoidei.