CMSC 420: Lecture 8 Treaps
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Trees • Binary Trees • Newer Types of Tree Structures • M-Ary Trees
Data Organization and Processing Hierarchical Indexing (NDBI007) David Hoksza http://siret.ms.mff.cuni.cz/hoksza 1 Outline • Background • prefix tree • graphs • … • search trees • binary trees • Newer types of tree structures • m-ary trees • Typical tree type structures • B-tree • B+-tree • B*-tree 2 Motivation • Similarly as in hashing, the motivation is to find record(s) given a query key using only a few operations • unlike hashing, trees allow to retrieve set of records with keys from given range • Tree structures use “clustering” to efficiently filter out non relevant records from the data set • Tree-based indexes practically implement the index file data organization • for each search key, an indexing structure can be maintained 3 Drawbacks of Index(-Sequential) Organization • Static nature • when inserting a record at the beginning of the file, the whole index needs to be rebuilt • an overflow handling policy can be applied → the performance degrades as the file grows • reorganization can take a lot of time, especially for large tables • not possible for online transactional processing (OLTP) scenarios (as opposed to OLAP – online analytical processing) where many insertions/deletions occur 4 Tree Indexes • Most common dynamic indexing structure for external memory • When inserting/deleting into/from the primary file, the indexing structure(s) residing in the secondary file is modified to accommodate the new key • The modification of a tree is implemented by splitting/merging nodes • Used not only in databases • NTFS directory structure -
KP-Trie Algorithm for Update and Search Operations
The International Arab Journal of Information Technology, Vol. 13, No. 6, November 2016 722 KP-Trie Algorithm for Update and Search Operations Feras Hanandeh1, Izzat Alsmadi2, Mohammed Akour3, and Essam Al Daoud4 1Department of Computer Information Systems, Hashemite University, Jordan 2, 3Department of Computer Information Systems, Yarmouk University, Jordan 4Computer Science Department, Zarqa University, Jordan Abstract: Radix-Tree is a space optimized data structure that performs data compression by means of cluster nodes that share the same branch. Each node with only one child is merged with its child and is considered as space optimized. Nevertheless, it can’t be considered as speed optimized because the root is associated with the empty string. Moreover, values are not normally associated with every node; they are associated only with leaves and some inner nodes that correspond to keys of interest. Therefore, it takes time in moving bit by bit to reach the desired word. In this paper we propose the KP-Trie which is consider as speed and space optimized data structure that is resulted from both horizontal and vertical compression. Keywords: Trie, radix tree, data structure, branch factor, indexing, tree structure, information retrieval. Received January 14, 2015; accepted March 23, 2015; Published online December 23, 2015 1. Introduction the exception of leaf nodes, nodes in the trie work merely as pointers to words. Data structures are a specialized format for efficient A trie, also called digital tree, is an ordered multi- organizing, retrieving, saving and storing data. It’s way tree data structure that is useful to store an efficient with large amount of data such as: Large data associative array where the keys are usually strings, bases. -
Balanced Trees Part One
Balanced Trees Part One Balanced Trees ● Balanced search trees are among the most useful and versatile data structures. ● Many programming languages ship with a balanced tree library. ● C++: std::map / std::set ● Java: TreeMap / TreeSet ● Many advanced data structures are layered on top of balanced trees. ● We’ll see several later in the quarter! Where We're Going ● B-Trees (Today) ● A simple type of balanced tree developed for block storage. ● Red/Black Trees (Today/Thursday) ● The canonical balanced binary search tree. ● Augmented Search Trees (Thursday) ● Adding extra information to balanced trees to supercharge the data structure. Outline for Today ● BST Review ● Refresher on basic BST concepts and runtimes. ● Overview of Red/Black Trees ● What we're building toward. ● B-Trees and 2-3-4 Trees ● Simple balanced trees, in depth. ● Intuiting Red/Black Trees ● A much better feel for red/black trees. A Quick BST Review Binary Search Trees ● A binary search tree is a binary tree with 9 the following properties: 5 13 ● Each node in the BST stores a key, and 1 6 10 14 optionally, some auxiliary information. 3 7 11 15 ● The key of every node in a BST is strictly greater than all keys 2 4 8 12 to its left and strictly smaller than all keys to its right. Binary Search Trees ● The height of a binary search tree is the 9 length of the longest path from the root to a 5 13 leaf, measured in the number of edges. 1 6 10 14 ● A tree with one node has height 0. -
Lecture 04 Linear Structures Sort
Algorithmics (6EAP) MTAT.03.238 Linear structures, sorting, searching, etc Jaak Vilo 2018 Fall Jaak Vilo 1 Big-Oh notation classes Class Informal Intuition Analogy f(n) ∈ ο ( g(n) ) f is dominated by g Strictly below < f(n) ∈ O( g(n) ) Bounded from above Upper bound ≤ f(n) ∈ Θ( g(n) ) Bounded from “equal to” = above and below f(n) ∈ Ω( g(n) ) Bounded from below Lower bound ≥ f(n) ∈ ω( g(n) ) f dominates g Strictly above > Conclusions • Algorithm complexity deals with the behavior in the long-term – worst case -- typical – average case -- quite hard – best case -- bogus, cheating • In practice, long-term sometimes not necessary – E.g. for sorting 20 elements, you dont need fancy algorithms… Linear, sequential, ordered, list … Memory, disk, tape etc – is an ordered sequentially addressed media. Physical ordered list ~ array • Memory /address/ – Garbage collection • Files (character/byte list/lines in text file,…) • Disk – Disk fragmentation Linear data structures: Arrays • Array • Hashed array tree • Bidirectional map • Heightmap • Bit array • Lookup table • Bit field • Matrix • Bitboard • Parallel array • Bitmap • Sorted array • Circular buffer • Sparse array • Control table • Sparse matrix • Image • Iliffe vector • Dynamic array • Variable-length array • Gap buffer Linear data structures: Lists • Doubly linked list • Array list • Xor linked list • Linked list • Zipper • Self-organizing list • Doubly connected edge • Skip list list • Unrolled linked list • Difference list • VList Lists: Array 0 1 size MAX_SIZE-1 3 6 7 5 2 L = int[MAX_SIZE] -
Assignment 3: Kdtree ______Due June 4, 11:59 PM
CS106L Handout #04 Spring 2014 May 15, 2014 Assignment 3: KDTree _________________________________________________________________________________________________________ Due June 4, 11:59 PM Over the past seven weeks, we've explored a wide array of STL container classes. You've seen the linear vector and deque, along with the associative map and set. One property common to all these containers is that they are exact. An element is either in a set or it isn't. A value either ap- pears at a particular position in a vector or it does not. For most applications, this is exactly what we want. However, in some cases we may be interested not in the question “is X in this container,” but rather “what value in the container is X most similar to?” Queries of this sort often arise in data mining, machine learning, and computational geometry. In this assignment, you will implement a special data structure called a kd-tree (short for “k-dimensional tree”) that efficiently supports this operation. At a high level, a kd-tree is a generalization of a binary search tree that stores points in k-dimen- sional space. That is, you could use a kd-tree to store a collection of points in the Cartesian plane, in three-dimensional space, etc. You could also use a kd-tree to store biometric data, for example, by representing the data as an ordered tuple, perhaps (height, weight, blood pressure, cholesterol). However, a kd-tree cannot be used to store collections of other data types, such as strings. Also note that while it's possible to build a kd-tree to hold data of any dimension, all of the data stored in a kd-tree must have the same dimension. -
Splay Trees Last Changed: January 28, 2017
15-451/651: Design & Analysis of Algorithms January 26, 2017 Lecture #4: Splay Trees last changed: January 28, 2017 In today's lecture, we will discuss: • binary search trees in general • definition of splay trees • analysis of splay trees The analysis of splay trees uses the potential function approach we discussed in the previous lecture. It seems to be required. 1 Binary Search Trees These lecture notes assume that you have seen binary search trees (BSTs) before. They do not contain much expository or backtround material on the basics of BSTs. Binary search trees is a class of data structures where: 1. Each node stores a piece of data 2. Each node has two pointers to two other binary search trees 3. The overall structure of the pointers is a tree (there's a root, it's acyclic, and every node is reachable from the root.) Binary search trees are a way to store and update a set of items, where there is an ordering on the items. I know this is rather vague. But there is not a precise way to define the gamut of applications of search trees. In general, there are two classes of applications. Those where each item has a key value from a totally ordered universe, and those where the tree is used as an efficient way to represent an ordered list of items. Some applications of binary search trees: • Storing a set of names, and being able to lookup based on a prefix of the name. (Used in internet routers.) • Storing a path in a graph, and being able to reverse any subsection of the path in O(log n) time. -
Position Heaps for Cartesian-Tree Matching on Strings and Tries
Position Heaps for Cartesian-tree Matching on Strings and Tries Akio Nishimoto1, Noriki Fujisato1, Yuto Nakashima1, and Shunsuke Inenaga1;2 1Department of Informatics, Kyushu University, Japan fnishimoto.akio, noriki.fujisato, yuto.nakashima, [email protected] 2PRESTO, Japan Science and Technology Agency, Japan Abstract The Cartesian-tree pattern matching is a recently introduced scheme of pattern matching that detects fragments in a sequential data stream which have a similar structure as a query pattern. Formally, Cartesian-tree pattern matching seeks all substrings S0 of the text string S such that the Cartesian tree of S0 and that of a query pattern P coincide. In this paper, we present a new indexing structure for this problem, called the Cartesian-tree Position Heap (CPH ). Let n be the length of the input text string S, m the length of a query pattern P , and σ the alphabet size. We show that the CPH of S, denoted CPH(S), supports pattern matching queries in O(m(σ + log(minfh; mg)) + occ) time with O(n) space, where h is the height of the CPH and occ is the number of pattern occurrences. We show how to build CPH(S) in O(n log σ) time with O(n) working space. Further, we extend the problem to the case where the text is a labeled tree (i.e. a trie). Given a trie T with N nodes, we show that the CPH of T , denoted CPH(T ), supports pattern matching queries on the trie in O(m(σ2 +log(minfh; mg))+occ) time with O(Nσ) space. -
Search Trees for Strings a Balanced Binary Search Tree Is a Powerful Data Structure That Stores a Set of Objects and Supports Many Operations Including
Search Trees for Strings A balanced binary search tree is a powerful data structure that stores a set of objects and supports many operations including: Insert and Delete. Lookup: Find if a given object is in the set, and if it is, possibly return some data associated with the object. Range query: Find all objects in a given range. The time complexity of the operations for a set of size n is O(log n) (plus the size of the result) assuming constant time comparisons. There are also alternative data structures, particularly if we do not need to support all operations: • A hash table supports operations in constant time but does not support range queries. • An ordered array is simpler, faster and more space efficient in practice, but does not support insertions and deletions. A data structure is called dynamic if it supports insertions and deletions and static if not. 107 When the objects are strings, operations slow down: • Comparison are slower. For example, the average case time complexity is O(log n logσ n) for operations in a binary search tree storing a random set of strings. • Computing a hash function is slower too. For a string set R, there are also new types of queries: Lcp query: What is the length of the longest prefix of the query string S that is also a prefix of some string in R. Prefix query: Find all strings in R that have S as a prefix. The prefix query is a special type of range query. 108 Trie A trie is a rooted tree with the following properties: • Edges are labelled with symbols from an alphabet Σ. -
Assignment of Master's Thesis
CZECH TECHNICAL UNIVERSITY IN PRAGUE FACULTY OF INFORMATION TECHNOLOGY ASSIGNMENT OF MASTER’S THESIS Title: Approximate Pattern Matching In Sparse Multidimensional Arrays Using Machine Learning Based Methods Student: Bc. Anna Kučerová Supervisor: Ing. Luboš Krčál Study Programme: Informatics Study Branch: Knowledge Engineering Department: Department of Theoretical Computer Science Validity: Until the end of winter semester 2018/19 Instructions Sparse multidimensional arrays are a common data structure for effective storage, analysis, and visualization of scientific datasets. Approximate pattern matching and processing is essential in many scientific domains. Previous algorithms focused on deterministic filtering and aggregate matching using synopsis style indexing. However, little work has been done on application of heuristic based machine learning methods for these approximate array pattern matching tasks. Research current methods for multidimensional array pattern matching, discovery, and processing. Propose a method for array pattern matching and processing tasks utilizing machine learning methods, such as kernels, clustering, or PSO in conjunction with inverted indexing. Implement the proposed method and demonstrate its efficiency on both artificial and real world datasets. Compare the algorithm with deterministic solutions in terms of time and memory complexities and pattern occurrence miss rates. References Will be provided by the supervisor. doc. Ing. Jan Janoušek, Ph.D. prof. Ing. Pavel Tvrdík, CSc. Head of Department Dean Prague February 28, 2017 Czech Technical University in Prague Faculty of Information Technology Department of Knowledge Engineering Master’s thesis Approximate Pattern Matching In Sparse Multidimensional Arrays Using Machine Learning Based Methods Bc. Anna Kuˇcerov´a Supervisor: Ing. LuboˇsKrˇc´al 9th May 2017 Acknowledgements Main credit goes to my supervisor Ing. -
Trees, Binary Search Trees, Heaps & Applications Dr. Chris Bourke
Trees Trees, Binary Search Trees, Heaps & Applications Dr. Chris Bourke Department of Computer Science & Engineering University of Nebraska|Lincoln Lincoln, NE 68588, USA [email protected] http://cse.unl.edu/~cbourke 2015/01/31 21:05:31 Abstract These are lecture notes used in CSCE 156 (Computer Science II), CSCE 235 (Dis- crete Structures) and CSCE 310 (Data Structures & Algorithms) at the University of Nebraska|Lincoln. This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License 1 Contents I Trees4 1 Introduction4 2 Definitions & Terminology5 3 Tree Traversal7 3.1 Preorder Traversal................................7 3.2 Inorder Traversal.................................7 3.3 Postorder Traversal................................7 3.4 Breadth-First Search Traversal..........................8 3.5 Implementations & Data Structures.......................8 3.5.1 Preorder Implementations........................8 3.5.2 Inorder Implementation.........................9 3.5.3 Postorder Implementation........................ 10 3.5.4 BFS Implementation........................... 12 3.5.5 Tree Walk Implementations....................... 12 3.6 Operations..................................... 12 4 Binary Search Trees 14 4.1 Basic Operations................................. 15 5 Balanced Binary Search Trees 17 5.1 2-3 Trees...................................... 17 5.2 AVL Trees..................................... 17 5.3 Red-Black Trees.................................. 19 6 Optimal Binary Search Trees 19 7 Heaps 19 -
Balanced Binary Search Trees 1 Introduction 2 BST Analysis
csce750 — Analysis of Algorithms Fall 2020 — Lecture Notes: Balanced Binary Search Trees This document contains slides from the lecture, formatted to be suitable for printing or individ- ual reading, and with some supplemental explanations added. It is intended as a supplement to, rather than a replacement for, the lectures themselves — you should not expect the notes to be self-contained or complete on their own. 1 Introduction CLRS 12, 13 A binary search tree is a data structure that supports these operations: • INSERT(k) • SEARCH(k) • DELETE(k) Basic idea: Store one key at each node. • All keys in the left subtree of n are less than the key stored at n. • All keys in the right subtree of n are greater than the key stored at n. Search and insert are trivial. Delete is slightly trickier, but not too bad. You may notice that these operations are very similar to the opera- tions available for hash tables. However, data structures like BSTs remain important because they can be extended to efficiently sup- port other useful operations like iterating over the elements in order, and finding the largest and smallest elements. These things cannot be done efficiently in hash tables. 2 BST Analysis Each operation can be done in time O(h) on a BST of height h. Worst case: Θ(n) Aside: Does randomization help? • Answer: Sort of. If we know all of the keys at the start, and insert them in a random order, in which each of the n! permutations is equally likely, then the expected tree height is O(lg n). -
Lecture Notes of CSCI5610 Advanced Data Structures
Lecture Notes of CSCI5610 Advanced Data Structures Yufei Tao Department of Computer Science and Engineering Chinese University of Hong Kong July 17, 2020 Contents 1 Course Overview and Computation Models 4 2 The Binary Search Tree and the 2-3 Tree 7 2.1 The binary search tree . .7 2.2 The 2-3 tree . .9 2.3 Remarks . 13 3 Structures for Intervals 15 3.1 The interval tree . 15 3.2 The segment tree . 17 3.3 Remarks . 18 4 Structures for Points 20 4.1 The kd-tree . 20 4.2 A bootstrapping lemma . 22 4.3 The priority search tree . 24 4.4 The range tree . 27 4.5 Another range tree with better query time . 29 4.6 Pointer-machine structures . 30 4.7 Remarks . 31 5 Logarithmic Method and Global Rebuilding 33 5.1 Amortized update cost . 33 5.2 Decomposable problems . 34 5.3 The logarithmic method . 34 5.4 Fully dynamic kd-trees with global rebuilding . 37 5.5 Remarks . 39 6 Weight Balancing 41 6.1 BB[α]-trees . 41 6.2 Insertion . 42 6.3 Deletion . 42 6.4 Amortized analysis . 42 6.5 Dynamization with weight balancing . 43 6.6 Remarks . 44 1 CONTENTS 2 7 Partial Persistence 47 7.1 The potential method . 47 7.2 Partially persistent BST . 48 7.3 General pointer-machine structures . 52 7.4 Remarks . 52 8 Dynamic Perfect Hashing 54 8.1 Two random graph results . 54 8.2 Cuckoo hashing . 55 8.3 Analysis . 58 8.4 Remarks . 59 9 Binomial and Fibonacci Heaps 61 9.1 The binomial heap .