Laccase BioBleaching Review
Matyas Kosa Georgia Institute of Technology School of Chemistry and Biochemistry OUTLINE • Introduction • Occurrence in microbes, structure of laccase & active site, enzyme activity • Active site – substrate oxidation • Mediator resources • CHEMISTRY; oxidative bleaching reactions between Laccase Mediator System (LMS) & – Lignin – Model compounds • Process parameters while laccase bleaching • Residual lignins
2 INTRODUCTION • Laccase BioBleaching could be an environment friendly alternative to conventional methods • No oxidative degradation on carbohydrates, more pulp more paper • Laccase “size-problems”, unable to diffuse into pulp fibers • Mediators (ABTS)
Chakar, F. S. (2000) Holzforschung 54: 647-653 Chakar, F. S. (2004) Canadian Journal of Chemistry 82: 344-352 Bourbonnais, R. P. (1992) Applied Microbiology and Biotechnology 36: 823-827 3 NATURAL OCCURRENCE • Trees: polymerization • Fungi: degradation or “rot” • Ascomycetes: soft rot, stain fungi • Basidiomycetes: white rot, brown rot • Selective for hemicelluloses/lignin in middle lamella and secondary cell wall using natural mediators • Enzymes of delignification: – Laccase – Lignin peroxidase, Manganese peroxidase, versatile peroxidase – (aryl-alcohol oxidase/dehydrogenase, quinone
reductase) Martinez, A. T. (2005) International Microbiology 8: 195-204 4 PEROXIDASES • Oxidants must be: – Strong enough to attack nonphenolic lignin structures – Small enough to penetrate lignin
– Extracellular systems to produce H2O2 (required for enzyme oxidation) • Lignin Peroxidase (LiP): degrades nonphenolic units up to 90%, uses veratryl alcohol as “mediator”, “real
ligninase” => high E0 (>1.4 V*) • Mn Peroxidase (MnP): generates Mn3+ as a diffusible oxidizer (chelated by organic acids), that in turn generates peroxide radicals (and others: phenoxi etc) • Versatile Peroxidase (VP): uses both above
Hammel, E. K. (2008) Current Opininon in Plant Biology 11: 349-355 Hofrichter, M. (2002) Enzyme and Microbial Technology 30: 454-466
Smith, A. T. (2009) Proceedings of the National Academy of Sciences 106: 16084-16089* 5 LACCASE • Laccase = benzenediol: oxygen oxidoreductase (or p- diphenol: dioxygen oxidoreductase) EC 1.10.3.2.
• It catalyzes the reduction of O2 to H2O while oxidizes (typically) a p-dihydroxy phenol or e.g. polyphenols and methoxy substituted phenols like lignin, but NOT tyrosine • Electrode potential not enough to oxidize nonphenolic lignin -> mediators – Low potential: <470 mV – Medium pot.: 470 mV – 730 mV – High Pot.: >730 mV Laccase oxidizing veratryl alcohol? Baldrian, P. (2006) FEMS Microbiology Reviews 30: 215-242 Martinez, A. T. (2005) International Microbiology 8: 195-204 Morozova, O. V. (2007) Biochemistry (Moscow) 72: 1396-1412 Through ABTS! Bourbonnais, R. P. (1990) FEBS Letters 267: 99-102 6 ENZYME PROPERTIES, ACTIVITY • Only catalyze thermodynamically favorable reactions towards an equilibrium between substrates and products @ given conditions (T, pH, starting conc. etc.) • Enzyme activity => 1 U (unit): the amount of enzyme that catalyzes the conversion of 1 mol substrate /min (SI: 1 katal = 1 mol s-1)
• Kinetic parameters: kcat turnover number, KM Michaelis equilibrium const, kcat/KM; (Usually the larger kcat the better as well as for kcat/KM, however KM‘s value would need more discussion. Here the smaller the better…)
Fersht, A. (1999). Structure and mechanism in protein science. New York, W. H. Freeman and Company 7 LACCASE STRUCTURE
3 domains all with -barrel topology.
Garavaglia, S. C. (2004) Journal of Molecular Biology 342: 1519-1531 Lyashenko, A. V. (2006) Acta Crystallographica Section F: Structural Biology and Crystallization Communications F62: 954-957 8 FOLDS, ACTIVE-SITE POSITION Melanocarpus albomyces Laccase SURFACE OF LACCASE
Active-site hydrophilic
hydrophobic
binding pocket with 2,6-dimethoxyphenol
binding pocket
Fold accommodate and enables connection between the binding site Active-site and the active site. Kallio, J. (2009) Journal of Molecular Biology 392: 895-909 9 SO FAR…
• Selective delignification by white rot fungi • Ligninolytic enzymes: laccase, peroxidase • Laccase: – 3 domains provide accommodation for the
binding/active sites, efficiency is important kcat
– Relatively low E0 (three categories) but large size, hence MEDIATORS are needed • Can be utilized to bleach Kraft-pulp
10 BLEACHING CONSIDERATIONS I.
Kraft-pulp (washed) Lignin: residual (native and Changes in lignin Kraft) (& carbohydrate) Lignin model compounds structures + Laccase Bleached pulp Laccase Mediator System (LMS)
LACCASE BIOBLEACHING
11 BLEACHING CONSIDERATIONS II.
• Laccase active site mechanism(s) • Mediator types
• Laccase efficiency [E0 (?), kcat, KM…] • Parameters affecting efficiency and substrate specificity • Laccase-Mediator-Lignin “oxidation-line” chemistry, step-by-step, direct-indirect • Laccase production, mediator resources • Environment for bleaching and its efficacy
12 ACTIVE-SITE
• Laccases are in the Multi Copper Oxidase (MCO) family • All MCO’s contain four Cu ions in their active sites: – 1 type 1 (T1) Cu, optic absorption @ 600 nm, causes “blue” color in the enzyme solution, EPR active, substrate oxidation site – 1 type 2 (T2) Cu, EPR active – 2 type 3 (T3) Cu, ions coupled through –OH bridge -> diamagnetic, no EPR acivity, UV 330 nm detection • T2+(2)T3= trinuclear site of O2 reduction to water Baldrian, P. (2006) FEMS Microbiology Reviews 30: 215-242 Quintanar, L. (2007) Accounts of Chemical Research 40: 445-452 Morozova, O. V. (2007) Biochemistry (Moscow) 72: 1396-1412 13 ACTIVE SITE STRUCTURE 1. His 1. ENTRY or substrate oxidation site w/ T1Cu, Cys X is an axial ligand 2. 2. His-Cys-His bridge that connects T1Cu to the trinuclear cluster ~13 Å e- 3. EXIT or O2 reduction OH site, T3Cu’s connected by –OH bridge ~4.3 Å
HOH 3. Baldrian, P. (2006) FEMS Microbiology Reviews 30: 215-242 Quintanar, L. (2007) Accounts of Chemical Research 40: 445-452 Morozova, O. V. (2007) Biochemistry (Moscow) 72: 1396-1412 14 SUBSTRATE OXIDATION SITE Phe Planar-triagonal geometry: because of phenylalanine as ~0.7-0.8 V axial ligand. When Met is absent Cys-Cu bond shows increased covalency (and ligand field strength). Met Met-Cu -> long bond; Cys- Cu -> short bond => 4 coor- dinate (tetrahedral) T1 site. ~0.4-0.6 V 3-coordinate T1 sites show substantially higher reduction potentials than 4- . Substrate (S) + Cu++ => S + Cu+ coordinate ones!
Site directed mutagenesis showed that the axial ligand of the T1 copper ion has no significant effect on redox potential of the T1 site of laccases! Then what does??? Quintanar, L. (2007) Accounts of Chemical Research 40: 445-452 Morozova, O. V. (2007) Biochemistry (Moscow) 72: 1396-1412 15 E0 & REACTIVITY • Factors, such as solvent accessibility, dipole orientation and H-bonding will contribute to the tuning of E0! • Does E0 affect reactivity? NO. It specifies the type of substrates that a given enzyme can oxidize (E0 has to be lower). Then what determines reactivity?
• Parameters associated with reactivity, efficiency (kcat): – Side-chains present in the binding site that enhance: laccase-substrate complex formation, orientation of this complex for appropriate electron transfer (ET) towards T1 – More solvent exposed T1 site, easier access by substrate – Changes in His-ligand distances to T1Cu Quintanar, L. (2007) Accounts of Chemical Research 40: 445-452 Morozova, O. V. (2007) Biochemistry (Moscow) 72: 1396-1412 16 MECHANISM
• Solvent exposed N: of His and another Glu or Asp Active-site Binding-site residue H-bond to the Asp or Glu substrate • The cleft otherwise is hydrophobic •H+ is withdrawn by the acid •e- is withdrawn by T1Cu through His and forwarded to the 2,6-DMP trinuclear center
Garzillo, A. M. (2001) Journal of Protein Chemistry 20: 191-201 Garavaglia, S. C. (2004) Journal of Molecular Biology 342: 1519-1531 Kallio, J. (2009) Journal of Molecular Biology 392: 895-909 17 BRIDGE • Bridge is formed by a His- Cys-His bridge • According to modeling pathways after knowing the crystal structure: –e- goes through Cys-S, Cys-C=O, H-bond, His-N’s then to the trinuclear cluster • Electrons are used to
reduce O2 to H2O Garavaglia, S. C. (2004) Journal of Molecular Biology 342: 1519-1531 Baldrian, P. (2006) FEMS Microbiology Reviews 30: 215-242 Shleev, S. (2008) Angewandte Chemie International Edition 47: 7270-7274 18 WHOLE ACTIVE SITE
Research Groups
O2 reductive cleavage, structure of radical containing active site intermediates. Discovered by EPR, Quantum and molecular mechanical studies.
Shleev, S. (2006) Biochimie 88: 1275-1285 Morozova, O. V. (2007) Biochemistry (Moscow) 72: 1396- 1412 Shleev, S. (2008) Angewandte Chemie International Edition 47: 7270-7274
Shin, W. (1996) Journal of the American Chemical Society 118: 3202-3215 Palmer, A. E. (2001) Journal of the American Chemical Society 123: 6591-6599 Solomon, E. I. (2001) Angewandte Chemie International Edition 40: 4570-4590 Lee, S.-K. (2002) Journal of the American Chemical Society 124: 6180-6193 Solomon, E. I. (2004) Chemical Reviews 104: 419-458 Rulisek, L. (2005) Inorganic Chemistry 44: 5612-5628 Quintanar, L. (2007) Accounts of Chemical Research 40: 445-452
19 PREDICTED “MECHANISM” 120: oxidized resting state 1: fully reduced enzyme 0 2: peroxide intermediate 3: native intermediate 1 4: native intermediate 2
4 3 Not fully understood, states 0-2 are observed + in 4 all Cu is 2+
- + 1-4: 02 + 4e + 4H = 2H2O
Shleev, S. (2006) Biochimie 88: 1275-1285 Rulisek, L. (2005) Inorganic Chemistry 44: 5612-5628 20 EFFECTS OF pH Non-phenolic substrate e.g. ABTS • Non-phenolic substrates loose only electron, however as pH increases HO- will bind to the trinuclear cluster decreasing activity: linear dependence on pH • Phenolics release H+, as the pH increases more Phenolic substrate e.g. 2,6-DMP phenoxy compounds -> higher activity. Then as pH increases more the above effect kicks in: Bell shaped pH profile
21 ACTIVE-SITE SUMMARY T and pH optimum!
Reaction with 2,6-DMP
fungi E0 [mV] kcat [1/s] T.t. 790 109 T.p. 742 24000 P.o. 740 120100 R.l. 730 7400 Other substrate -> different activities!
Entry site: T1Cu: H-C-H: Exit site: Trinuclear cluster, O2 substrate is catalytic e- are molecule binds in and through oxidized activity transported the peroxide and native states while T1 site depends from T1 to gets reduced to 2 water is reduced on multiple trinuclear cl. molecules with 4 e- transported (x4) factors but from substrates
not E0 22 LACCASE SIZE PROBLEMS
Archibald, F. S. (1997) Journal of Biotechnology 53: 215-236 23 ACTIVITY PROPERTIES
• Activity really depends on the following factors: – Side-chains present in the binding site that enhance: laccase- substrate complex formation, orientation of this complex for appropriate electron transfer (ET) towards T1 – More solvent exposed T1 site, easier access by substrate – Changes in His- distances to T1Cu • Laccase cannot reach lignin in cell-walls
Can it be that laccase evolve(-d) to oxidize “small” molecules
(mediators) by increasing its active site E0 and specifically changes its binding/active site structures for enhanced electron transfer?! “Host-range” mutation, where range is not lignin but the most abundant relatively high E0 mediator…
24 BLEACHING CONSIDERATIONS III SUBSTRATE OXIDATION: • Lignin model compounds • Mediators • Native lignin in pulp • Kraft lignin • Residual lignin • In bleaching: mediator(s) and residual lignin after Kraft cycle
Bourbonnais, R. (1998) Biochimica et Biophysica Acta 1379: 381-390 25 LACCASE OR LMS • Using lignin from totally different sources with different kind of mediators and laccase preparations, and combining these in basically every possible way, the results show: • IF ONLY LACCASE IS USED THE LIGNIN WILL POLYMERIZE • IF LACCASE MEDIATOR SYSTEM (LMS) IS USED THEN THE LIGNIN WILL DEPOLYMERIZE
Shleev, S. (2006) Enzyme and Microbial Technology 39: 841-847 26 NATURAL MEDIATORS
acetosyringone syringaldehyde acetovanillone
534 542 E0 [mV] vs. SCE* • Secreted extracellularly by fungi • Present in situ as common secondary plant metabolites • Released in large amounts during the microbial degradation of lignocellulose
Gonzalez Arzola, K. (2009) Electrochimica Acta 54: 2621-2629 *Standard Calomel Electrode 27 SYNTHETIC MEDIATORS
2,2’-azino-bis(3-ethyl-benzothiazoline 1-hydroxybenzotriazole Violuric acid -6-sulphonic acid) ABTS HBT VLA
E0 [mV] vs. SCE* 441 663
• These compounds are target substrates of laccases • They can mediate lignin or veratryl alcohol (VA) oxidation only after being oxidised by laccase or an electrode
Gonzalez Arzola, K. (2009) Electrochimica Acta 54: 2621-2629 *Standard Calomel Electrode 28 ELECTROCHEMISTRY • Cyclic voltammetry: with Current [A] 0.2 mM ABTS in pH=4 ABTS2+
+. buffer the potential of the Ea ABTS ABTS
electrochemical cell is Ea i continuously increased by a 20 mV/s until 1000 mV is ic 2+ ic ABTS reached vs AG/AgCl Ec ABTS+. electrode ABTS • Then E is decreased with same rate Potential [mV]
• Current is monitored Ea = anodic-oxidation potential