Ecological Limits on Diversification of the Himalayan Core Corvoidea
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Resolving Phylogenetic Relationships Within Passeriformes Based on Mitochondrial Genes and Inferring the Evolution of Their Mitogenomes in Terms of Duplications
GBE Resolving Phylogenetic Relationships within Passeriformes Based on Mitochondrial Genes and Inferring the Evolution of Their Mitogenomes in Terms of Duplications Paweł Mackiewicz1,*, Adam Dawid Urantowka 2, Aleksandra Kroczak1,2, and Dorota Mackiewicz1 1Department of Bioinformatics and Genomics, Faculty of Biotechnology, University of Wrocław, Poland 2Department of Genetics, Wroclaw University of Environmental and Life Sciences, Poland *Corresponding author: E-mail: pamac@smorfland.uni.wroc.pl. Accepted: September 30, 2019 Abstract Mitochondrial genes are placed on one molecule, which implies that they should carry consistent phylogenetic information. Following this advantage, we present a well-supported phylogeny based on mitochondrial genomes from almost 300 representa- tives of Passeriformes, the most numerous and differentiated Aves order. The analyses resolved the phylogenetic position of para- phyletic Basal and Transitional Oscines. Passerida occurred divided into two groups, one containing Paroidea and Sylvioidea, whereas the other, Passeroidea and Muscicapoidea. Analyses of mitogenomes showed four types of rearrangements including a duplicated control region (CR) with adjacent genes. Mapping the presence and absence of duplications onto the phylogenetic tree revealed that the duplication was the ancestral state for passerines and was maintained in early diverged lineages. Next, the duplication could be lost and occurred independently at least four times according to the most parsimonious scenario. In some lineages, two CR copies have been inherited from an ancient duplication and highly diverged, whereas in others, the second copy became similar to the first one due to concerted evolution. The second CR copies accumulated over twice as many substitutions as the first ones. However, the second CRs were not completely eliminated and were retained for a long time, which suggests that both regions can fulfill an important role in mitogenomes. -
The Relationships of the Starlings (Sturnidae: Sturnini) and the Mockingbirds (Sturnidae: Mimini)
THE RELATIONSHIPS OF THE STARLINGS (STURNIDAE: STURNINI) AND THE MOCKINGBIRDS (STURNIDAE: MIMINI) CHARLESG. SIBLEYAND JON E. AHLQUIST Departmentof Biologyand PeabodyMuseum of Natural History,Yale University, New Haven, Connecticut 06511 USA ABSTRACT.--OldWorld starlingshave been thought to be related to crowsand their allies, to weaverbirds, or to New World troupials. New World mockingbirdsand thrashershave usually been placed near the thrushesand/or wrens. DNA-DNA hybridization data indi- cated that starlingsand mockingbirdsare more closelyrelated to each other than either is to any other living taxon. Some avian systematistsdoubted this conclusion.Therefore, a more extensiveDNA hybridizationstudy was conducted,and a successfulsearch was made for other evidence of the relationshipbetween starlingsand mockingbirds.The resultssup- port our original conclusionthat the two groupsdiverged from a commonancestor in the late Oligoceneor early Miocene, about 23-28 million yearsago, and that their relationship may be expressedin our passerineclassification, based on DNA comparisons,by placing them as sistertribes in the Family Sturnidae,Superfamily Turdoidea, Parvorder Muscicapae, Suborder Passeres.Their next nearest relatives are the members of the Turdidae, including the typical thrushes,erithacine chats,and muscicapineflycatchers. Received 15 March 1983, acceptedI November1983. STARLINGS are confined to the Old World, dine thrushesinclude Turdus,Catharus, Hylocich- mockingbirdsand thrashersto the New World. la, Zootheraand Myadestes.d) Cinclusis -
Ornamentation, Behavior, and Maternal Effects in the Female Northern Cardinal
The University of Southern Mississippi The Aquila Digital Community Master's Theses Summer 8-2011 Ornamentation, Behavior, and Maternal Effects in the Female Northern Cardinal Caitlin Winters University of Southern Mississippi Follow this and additional works at: https://aquila.usm.edu/masters_theses Part of the Biology Commons, and the Ornithology Commons Recommended Citation Winters, Caitlin, "Ornamentation, Behavior, and Maternal Effects in the Female Northern Cardinal" (2011). Master's Theses. 240. https://aquila.usm.edu/masters_theses/240 This Masters Thesis is brought to you for free and open access by The Aquila Digital Community. It has been accepted for inclusion in Master's Theses by an authorized administrator of The Aquila Digital Community. For more information, please contact [email protected]. The University of Southern Mississippi ORNAMENTATION, BEHAVIOR, AND MATERNAL EFFECTS IN THE FEMALE NORTHERN CARDINAL by Caitlin Winters A Thesis Submitted to the Graduate School of The University of Southern Mississippi in Partial Fulfillment of the Requirements for the Degree of Master of Science Approved: _Jodie M. Jawor_____________________ Director _Frank R. Moore_____________________ _Robert H. Diehl_____________________ _Susan A. Siltanen____________________ Dean of the Graduate School August 2011 ABSTRACT ORNAMENTATION, BEHAVIOR, AND MATERNAL EFFECTS IN THE FEMALE NORTHERN CARDINAL by Caitlin Winters August 2011 This study seeks to understand the relationship between ornamentation, maternal effects, and behavior in the female Northern Cardinal (Cardinalis cardinalis). Female birds possess ornaments that indicate a number of important known aspects of quality and are usually costly to maintain. However, the extent to which female specific traits, such as maternal effects, are indicated is less clear. It is predicted by the Good Parent Hypothesis that this information should be displayed through intraspecific signal communication. -
New Zealand Passerines Help Clarify the Diversification of Major Songbird Lineages During the Oligocene
GBE New Zealand Passerines Help Clarify the Diversification of Major Songbird Lineages during the Oligocene Gillian C. Gibb1,*,y, Ryan England2,4,y, Gerrit Hartig2,5, Patricia A. (Trish) McLenachan2, Briar L. Taylor Smith1, Bennet J. McComish2,6, Alan Cooper3, and David Penny2 1Ecology Group, Institute of Agriculture and Environment, Massey University, Palmerston North, New Zealand 2Institute of Fundamental Sciences, Massey University, Palmerston North, New Zealand 3Australian Centre for Ancient DNA, School of Earth and Environmental Sciences, University of Adelaide, South Australia, Australia 4Present address: Forensic Business Group, Institute of Environmental Science and Research (ESR Ltd.), Mt Albert Science Centre, Auckland, New Zealand 5Present address: Starlims Germany GmbH An Abbott Company, Witten, Germany 6Present address: School of Physical Sciences, University of Tasmania, Hobart, Australia *Corresponding author: E-mail: [email protected]. yThese authors contributed equally to this work. Accepted: October 7, 2015 Data deposition: This project has been deposited at GenBank under the accession numbers KC545397-KC545409, KT894672. Abstract Passerines are the largest avian order, and the 6,000 species comprise more than half of all extant bird species. This successful radiation probably had its origin in the Australasian region, but dating this origin has been difficult due to a scarce fossil record and poor biogeographic assumptions. Many of New Zealand’s endemic passerines fall within the deeper branches of the passerine radiation, and a well resolved phylogeny for the modern New Zealand element in the deeper branches of the oscine lineage will help us understand both oscine and passerine biogeography. To this end we present complete mitochondrial genomes representing all families of New Zealand passerines in a phylogenetic framework of over 100 passerine species. -
Passerines: Perching Birds
3.9 Orders 9: Passerines – perching birds - Atlas of Birds uncorrected proofs 3.9 Atlas of Birds - Uncorrected proofs Copyrighted Material Passerines: Perching Birds he Passeriformes is by far the largest order of birds, comprising close to 6,000 P Size of order Cardinal virtues Insect-eating voyager Multi-purpose passerine Tspecies. Known loosely as “perching birds”, its members differ from other Number of species in order The Northern or Common Cardinal (Cardinalis cardinalis) The Common Redstart (Phoenicurus phoenicurus) was The Common Magpie (Pica pica) belongs to the crow family orders in various fine anatomical details, and are themselves divided into suborders. Percentage of total bird species belongs to the cardinal family (Cardinalidae) of passerines. once thought to be a member of the thrush family (Corvidae), which includes many of the larger passerines. In simple terms, however, and with a few exceptions, passerines can be described Like the various tanagers, grosbeaks and other members (Turdidae), but is now known to belong to the Old World Like many crows, it is a generalist, with a robust bill adapted of this diverse group, it has a thick, strong bill adapted to flycatchers (Muscicapidae). Its narrow bill is adapted to to feeding on anything from small animals to eggs, carrion, as small birds that sing. feeding on seeds and fruit. Males, from whose vivid red eating insects, and like many insect-eaters that breed in insects, and grain. Crows are among the most intelligent of The word passerine derives from the Latin passer, for sparrow, and indeed a sparrow plumage the family is named, are much more colourful northern Europe and Asia, this species migrates to Sub- birds, and this species is the only non-mammal ever to have is a typical passerine. -
An Update of Wallacels Zoogeographic Regions of the World
REPORTS To examine the temporal profile of ChC produc- specification of a distinct, and probably the last, 3. G. A. Ascoli et al., Nat. Rev. Neurosci. 9, 557 (2008). tion and their correlation to laminar deployment, cohort in this lineage—the ChCs. 4. J. Szentágothai, M. A. Arbib, Neurosci. Res. Program Bull. 12, 305 (1974). we injected a single pulse of BrdU into pregnant A recent study demonstrated that progeni- CreER 5. P. Somogyi, Brain Res. 136, 345 (1977). Nkx2.1 ;Ai9 females at successive days be- tors below the ventral wall of the lateral ventricle 6. L. Sussel, O. Marin, S. Kimura, J. L. Rubenstein, tween E15 and P1 to label mitotic progenitors, (i.e., VGZ) of human infants give rise to a medial Development 126, 3359 (1999). each paired with a pulse of tamoxifen at E17 to migratory stream destined to the ventral mPFC 7. S. J. Butt et al., Neuron 59, 722 (2008). + 18 8. H. Taniguchi et al., Neuron 71, 995 (2011). label NKX2.1 cells (Fig. 3A). We first quanti- ( ). Despite species differences in the develop- 9. L. Madisen et al., Nat. Neurosci. 13, 133 (2010). fied the fraction of L2 ChCs (identified by mor- mental timing of corticogenesis, this study and 10. J. Szabadics et al., Science 311, 233 (2006). + phology) in mPFC that were also BrdU+. Although our findings raise the possibility that the NKX2.1 11. A. Woodruff, Q. Xu, S. A. Anderson, R. Yuste, Front. there was ChC production by E15, consistent progenitors in VGZ and their extended neurogenesis Neural Circuits 3, 15 (2009). -
The Division of the Major Songbird Radiation Into Passerida and 'Core
TheBlackwell Publishing Ltd division of the major songbird radiation into Passerida and ‘core Corvoidea’ (Aves: Passeriformes) — the species tree vs. gene trees MARTIN IRESTEDT & JAN I. OHLSON Submitted: 19 July 2007 Irestedt, M. & Ohlson, J. I. (2008). The division of the major songbird radiation into Passerida Accepted: 26 November 2007 and ‘core Corvoidea’ (Aves: Passeriformes) — the species tree vs. gene trees. — Zoologica doi:10.1111/j.1463-6409.2007.00321.x Scripta, 37, 305–313. The knowledge of evolutionary relationships among oscine songbirds has been largely improved in recent years by molecular phylogenetic studies. However, current knowledge is still largely based on sequence data from a limited number of loci. In this study, we re-evaluate relationships among basal lineages within the ‘core Corvoidea’ and Passerida radiations, by adding additional loci to previously published data. The trees obtained from the individual genes suggest incongruent topologies. Especially the positions of Callaeatidae (wattlebirds), Cnemophilidae (satinbirds) and Melanocharitidae (longbills and berrypeckers) vary among the trees, but RAG-1 is the only gene that unambiguously suggested a ‘core Corvoidea’ affinity for these taxa. Analyses of various combined data sets show that the phylogenetic positions for Callaeatidae, Cnemophilidae and Melanocharitidae largely depend on which genes that have been combined. As the RAG-1 gene has contributed to a majority of the phylogenetic information in previous studies, it has deeply influenced previous molecular affinities of these taxa. Based on the current data, we found a reasonable support for a Passerida affinity of Callaeatidae and Cnemophilidae, contrary to previous molecular studies. The position of Melanocharitidae is more unstable but a basal position among Passerida is congruent with a deletion observed in the glyceraldehyde-3-phosphodehydrogenase (GAPDH) loci. -
COVER PAGE and CAMPUS MAP to Be Inserted (Campus Map on Last Page)
COVER PAGE and CAMPUS MAP to be inserted (campus map on last page) 1 Welcome and Conference Overview Welcome to the 2012 New Zealand Ecological Society Conference. The organising committee is excited by the wide range of symposia and papers submitted. When we volunteered Lincoln University to host this conference we wanted to show that science is still alive and well in Canterbury and the great response we have had from all of you indicates that our somewhat shaken heart is still beating! Given the high numbers of papers submitted we have had to organise four concurrent sessions for the first two days of the conference. What this means is that we are hosting over 130 oral presentations. This high level of demand was somewhat unexpected but we are pleased to report that we accepted nearly all of the oral papers that were submitted to the conference organisers. No mean feat! I would especially like to thank the organising committee and all our student helpers. We have a small team of organisers and they have all worked extremely hard to bring this event together. Our postgraduate students have done an excellent job creating the “student-only day” and it was a delight to support this endeavour. We also thank the Lincoln University Conference & Event Management group for their professional management of this event. Well done team! This conference would not have been possible without the generous support of all our sponsors. Given the current economic climate I did wonder if we may end up with the “2012 Austerity Conference”; however, I was pleasantly surprised with the level of support we have received and I particularly want to thank our main sponsors: the Faculty of Agriculture and Life Sciences here at Lincoln and the Department of Conservation. -
Status and Occurrence of Northern Cardinal (Cardinalis Cardinalis) in British Columbia
Status and Occurrence of Northern Cardinal (Cardinalis cardinalis) in British Columbia. By Rick Toochin and Don Cecile. Submitted: April 15, 2018. Introduction and Distribution The Northern Cardinal (Cardinalis cardinalis) is a charismatic passerine found throughout eastern Canada, the eastern United States, throughout Mexico, Belize and the Petén part of northern Guatemala (Halkin and Linville 1999, Howell and Webb 2010). This species is a year round resident throughout its range, but is slowly expanding its range northward and westward across North America (Halkin and Linville 1999). Nearly 90% of banded individuals that were found dead came from same 10-minute block of latitude and longitude where they were initially banded, and those found dead at greater distances show no directional pattern in movements (Dow and Scott 1971). Reports of possible migration may be accounted for by dispersing juveniles (Halkin and Linville 1999). There is no known record of a breeding bird recovered at great distance in the following winter (Halkin and Linville 1999). The Northern Cardinal is found in areas with shrubs, small trees, including forest edges and interior, shrubby areas in logged and second-growth forests, marsh edges, grasslands with shrubs, successional fields, hedgerows in agricultural fields, and plantings around buildings (Dow 1969a, Dow 1969b, Emlen 1972a). In general, this species’ breeding range has expanded northward since the mid- 1800s, owing to 3 probable factors: warmer climate, resulting in lesser snow depth and greater winter foraging opportunities; human encroachment into forested areas, increasing suitable edge habitat; and establishment of winter feeding stations, increasing food availability (Halkin and Linville 1999). There are 18 subspecies of the Northern Cardinal; most are found in Mexico (Clements et al. -
Recent Literature
564 tVol.[ Auk73 RECENT LITERATURE EDITED BY FRANK McKINNEY ANATOMY AND EMBRYOLOGY ALDriCH, E.C. 1956. Pterylography and molt of the Allen Hummingbird. Con- dor, 58: 121-133.--Feather tracts of Selasphorussasin are diagrammed in detail and discussed,and comparisonsare made with certain other species. Specialized rectrices,which are sexually dimorphic, assistin production of flight sounds. Molt and degrees of plumage wear are suggestedas criteria of age and sex.--D. W. J. BAILEY, R.E. 1955. The incubation patch of tinamous. Condor, 57: 301-303.- Twenty-sevenindividuals of Nothoproctafrom Peru have been examinedin this study. All males had incubation patches during the breeding season(Feb.-Apr.), but males collected at other times of the year and all females lacked such patches. Gross anatomical descriptions are given for ventral apteria, molt, and the patches, and microscopicsections are depicted for nonbreedingand breeding males. These are the first details available for the incubation patches of ratitc birds.--D. W. J. BAs, C. 1954-1955. On the relation between the masticatory muscles and the surface of the skull in Ardea cinerea (L.) Parts I-III (to be continued). Kon. Nederlandse Akad. Wetensch. Ser. C. Biol. Med. Sci., 57: 678-685, figs. 1-6. 58: 101-120, figs. 7-40. BE•GE•, A.J. 1955. On the anatomy and relationships of Glossy Cuckoos of the genera Chrysococcyx,Lampromorpha, and Chalcites. Proc. U.S. Nat. Mus., 10S: no. 3335: 585-597, 3 pls. BE•cER, A.J. 1956. The appendicularmyology of the Pygmy Falcon (Polihierax semitorquatus). Amer. Midi. Nat., 55: 326-333, 3 figs. BU•GG•AAF, P. -
Northern Cardinal (Cardinalis Cardinalis) Gail Mcpeek
Northern Cardinal (Cardinalis cardinalis) Gail McPeek Oakwoods Metropark, Monroe Co., MI 11/3/2008 © Jerry Jourdan This species sponsored in memory of Herb Harrington. (Click to view a comparison of Atlas I to II) Few birds add such beauty to our provided by bird feeders (Halkin and Linville 1999). neighborhoods as the Northern Cardinal. A brilliant red male singing from a green treetop Distribution against a sky-blue backdrop is a picture perfect Michigan’s avian checklists chronicle the moment. This year-round resident also adds a dramatic change in status and distribution for cheery splash of red during Michigan’s long, the cardinal. In just 150 years, this species went snowy winters. The cardinal ranks among our from accidental visitor (Gibbs 1879); to rare and most popular birds. Its image adorns mail mainly confined to the southern LP (Barrows boxes, home décor, clothing and sports apparel, 1912); to common in southern Michigan and and it is the official bird of seven states. The spreading northwards (Wood 1951); to the cardinal eats a variety of insects, fruits and present distribution mapped by both Atlases. seeds. Its conical bill is a powerful seed Now the Northern Cardinal is common across crusher, a skill easily observed at feeders with much of the LP, and is rare but well established sunflower seeds. During fall molt, both males in parts of the UP. and females consume fruits and insects high in carotenoid pigments. These are essential for MBBA II results clearly show that the cardinal maintaining plumage color, even the tints of red continued its northward advance during the last on the otherwise grayish-tan female. -
An Initial Estimate of Avian Ark Kinds
Answers Research Journal 6 (2013):409–466. www.answersingenesis.org/arj/v6/avian-ark-kinds.pdf An Initial Estimate of Avian Ark Kinds Jean K. Lightner, Liberty University, 1971 University Blvd, Lynchburg, Virginia, 24515. Abstract Creationists recognize that animals were created according to their kinds, but there has been no comprehensive list of what those kinds are. As part of the Answers in Genesis Ark Encounter project, research was initiated in an attempt to more clearly identify and enumerate vertebrate kinds that were SUHVHQWRQWKH$UN,QWKLVSDSHUXVLQJPHWKRGVSUHYLRXVO\GHVFULEHGSXWDWLYHELUGNLQGVDUHLGHQWLÀHG 'XHWRWKHOLPLWHGLQIRUPDWLRQDYDLODEOHDQGWKHIDFWWKDWDYLDQWD[RQRPLFFODVVLÀFDWLRQVVKLIWWKLVVKRXOG be considered only a rough estimate. Keywords: Ark, kinds, created kinds, baraminology, birds Introduction As in mammals and amphibians, the state of avian $VSDUWRIWKH$UN(QFRXQWHUSURMHFW$QVZHUVLQ WD[RQRP\LVLQÁX['HVSLWHWKHLGHDORIQHDWO\QHVWHG Genesis initiated and funded research in an attempt hierarchies in taxonomy, it seems groups of birds to more clearly identify and enumerate the vertebrate are repeatedly “changing nests.” This is partially NLQGVWKDWZHUHSUHVHQWRQWKH$UN,QDQLQLWLDOSDSHU because where an animal is placed depends on which WKH FRQFHSW RI ELEOLFDO NLQGV ZDV GLVFXVVHG DQG D characteristics one chooses to consider. While many strategy to identify them was outlined (Lightner et al. had thought that molecular data would resolve these 6RPHRIWKHNH\SRLQWVDUHQRWHGEHORZ issues, in some cases it has exacerbated them. For this There is tremendous variety seen today in animal HVWLPDWHRIWKHDYLDQ$UNNLQGVWKHWD[RQRPLFVFKHPH OLIHDVFUHDWXUHVKDYHPXOWLSOLHGDQGÀOOHGWKHHDUWK presented online by the International Ornithologists’ since the Flood (Genesis 8:17). In order to identify 8QLRQ ,28 ZDVXVHG *LOODQG'RQVNHUD which modern species are related, being descendants 2012b and 2013). This list includes information on RI D VLQJOH NLQG LQWHUVSHFLÀF K\EULG GDWD LV XWLOL]HG extant and some recently extinct species.